Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8501515.1

Orthogroup ID

OG0011077

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2121

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8501515.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1069 bp

gtttgttgcagatcttatccattttggagctgtgtattatgcccttgtatgtccaaagcctcctccaaccgcgacgcccgaggaaatgaaggtatataaagaagctacagcaccatcagtactgaaaaagagagcttctataaaaggaaaaactgtaagagaagcacagaagactttcaggatcacacatgtagaccaatttgttgaagatggaacgtacttacgtgtgcatgtacacccaaagcgtttccctaggtgctatgaaattgactggaaatcaagagttatagcagtaaatgaagactttgtggtgttggacaaacctgctggtacaacagttggaggaaccacagacaacattgaagaaagttgtgcaacctttacctcccgtgccttaggactaacaacccccctgatgaccacacatcagattgataattgtacagaaggatgtgttgtcttagctagaaccaaggagtattgctcagtttttcatggaaaaatccgagaaaaacaagtgaagaaactttatcttgctcttgctgctgctcctgtgccacttggaacaattactcactacatgcgtccaattaatgtggctccacgactcatttcagaagattccattgaaaggtggagtttgtgtcagcttgaggtgatggaatgcaagaaagttccctggccaaattctgtcatcgaagagaaatacggtgttgaagactgtgggtggccttcaaaagattatgcatatgagtgtaaaatcaaccttttgactgggaagactcatcagattcgagcacagttagctgctcatggtgcacctctagtgggtgattccatgtacatgccagctgcaattgcagagattgcaagtcctgagctgaacccgtttggcaaacataagaaacattatattggcgaagatgagaaagaaatagctgttactgagtggatggcacggcatggaaaggaacctaatgttgctattggtcttcaagcttgtcagatatcatgggatgatggcgagcacagttttgaggctagagctccttggtggaggtgtgaataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

355

Amino Acids

39.92

Weight (kDa)

6.95

Isoelectric Point (pI)

49.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21770 AT4G21770
fragaria_vesca	FvH4_3g02480 FvH4_3g02480 FvH4_3g02480
malus_domestica	MD10G1317000.v1.1 MD10G1317600.v1.1
prunus_persica	Prupe.4G024200_v2.0.a1
pyrus_communis	pycom10g26870
rosa_chinensis	RchiOBHm_Chr5g0003731
rosa_laevigata	RLG00000031171
rosa_multiflora	Rmu_co8501515.1_g000001 Rmu_sc0000500.1_g000006 Rmu_sc0033912.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072230
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033500 Rh5BG031900 Rh5CG036200
rosa_wichuraiana	Rw5G003090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	332
AccI	GTMKAC	1 cut(s)	193
AccII	CGCG	1 cut(s)	72
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	1 cut(s)	189
AcoI	YGGCCR	1 cut(s)	681
AcsI	RAATTY	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	75
AfaI	GTAC	6 cut(s)	121, 219, 235, 332, 443, 843
AfiI	CCNNNNNNNGG	2 cut(s)	631, 828
AflIII	ACRYGT	2 cut(s)	188, 224
AgsI	TTSAA	6 cut(s)	207, 363, 630, 717, 736, 996
AjnI	CCWGG	1 cut(s)	678
Alw21I	GWGCWC	4 cut(s)	800, 821, 1030, 1049
Alw44I	GTGCAC	1 cut(s)	817
AlwI	GGATC	1 cut(s)	189
Ama87I	CYCGRG	1 cut(s)	78
AoxI	GGCC	2 cut(s)	681, 729
ApaLI	GTGCAC	1 cut(s)	817
ApeKI	GCWGC	4 cut(s)	543, 546, 807, 852
ApoI	RAATTY	1 cut(s)	686
AseI	ATTAAT	1 cut(s)	592
Asp700I	GAANNNNTTC	1 cut(s)	174
AspA2I	CCTAGG	1 cut(s)	252
AsuHPI	GGTGA	2 cut(s)	668, 843
AvaI	CYCGRG	1 cut(s)	78
AvrII	CCTAGG	1 cut(s)	252
AxyI	CCTNAGG	1 cut(s)	395
BaeGI	GKGCMC	1 cut(s)	821
BaeI	ACNNNNGTAYC	2 cut(s)	322, 355
BalI	TGGCCA	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	1049
BbsI	GAAGAC	5 cut(s)	177, 307, 724, 786, 984
Bbv12I	GWGCWC	4 cut(s)	800, 821, 1030, 1049
BbvI	GCAGC	4 cut(s)	530, 533, 794, 839
BccI	CCATC	5 cut(s)	122, 204, 653, 947, 1014
BceAI	ACGGC	1 cut(s)	975
BciT130I	CCWGG	1 cut(s)	680
BfaI	CTAG	4 cut(s)	253, 466, 825, 1042
BfmI	CTRYAG	1 cut(s)	106
BfuAI	ACCTGC	1 cut(s)	332
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	4 cut(s)	544, 547, 808, 853
BlnI	CCTAGG	1 cut(s)	252
BlsI	GCNGC	4 cut(s)	545, 548, 809, 854
BmcAI	AGTACT	1 cut(s)	121
Bme1390I	CCNGG	1 cut(s)	680
BmeT110I	CYCGRG	1 cut(s)	78
BmiI	GGNNCC	3 cut(s)	347, 601, 973
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	784
BmuI	ACTGGG	1 cut(s)	784
BpiI	GAAGAC	5 cut(s)	177, 307, 724, 786, 984
BplI	GAGNNNNNCTC	2 cut(s)	468, 500
Bpu10I	CCTNAGC	1 cut(s)	877
BpuEI	CTTGAG	1 cut(s)	672
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	75
BsaJI	CCNNGG	5 cut(s)	79, 252, 472, 678, 1050
BsaXI	ACNNNNNCTCC	2 cut(s)	629, 659
Bsc4I	CCNNNNNNNGG	2 cut(s)	631, 828
Bse1I	ACTGG	2 cut(s)	276, 779
Bse21I	CCTNAGG	1 cut(s)	395
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	5 cut(s)	79, 252, 472, 678, 1050
BseGI	GGATG	3 cut(s)	456, 958, 1022
BseLI	CCNNNNNNNGG	2 cut(s)	631, 828
BseMII	CTCAG	3 cut(s)	499, 868, 937
BseNI	ACTGG	2 cut(s)	276, 779
BseRI	GAGGAG	1 cut(s)	52
BseSI	GKGCMC	1 cut(s)	821
BseXI	GCAGC	4 cut(s)	530, 533, 794, 839
Bsh1236I	CGCG	1 cut(s)	72
BshFI	GGCC	2 cut(s)	683, 731
BsiHKAI	GWGCWC	4 cut(s)	800, 821, 1030, 1049
BsiHKCI	CYCGRG	1 cut(s)	78
BslI	CCNNNNNNNGG	2 cut(s)	631, 828
BsmI	GAATGC	1 cut(s)	669
BsnI	GGCC	2 cut(s)	683, 731
BsoBI	CYCGRG	1 cut(s)	78
Bsp1286I	GDGCHC	4 cut(s)	800, 821, 1030, 1049
Bsp1407I	TGTACA	3 cut(s)	233, 441, 841
Bsp143I	GATC	2 cut(s)	11, 181
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	683, 731
BspCNI	CTCAG	3 cut(s)	498, 869, 938
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	347, 601, 973
BspMI	ACCTGC	1 cut(s)	332
BspPI	GGATC	1 cut(s)	189
BsrGI	TGTACA	3 cut(s)	233, 441, 841
BsrI	ACTGG	2 cut(s)	276, 779
BssECI	CCNNGG	5 cut(s)	79, 252, 472, 678, 1050
BssMI	GATC	2 cut(s)	11, 181
BssNI	GRCGYC	1 cut(s)	75
BssT1I	CCWWGG	3 cut(s)	252, 472, 1050
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	6 cut(s)	155, 338, 711, 723, 802, 1032
Bst6I	CTCTTC	1 cut(s)	694
BstACI	GRCGYC	1 cut(s)	75
BstAPI	GCANNNNNTGC	1 cut(s)	867
BstAUI	TGTACA	3 cut(s)	233, 441, 841
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	2 cut(s)	850, 1026
BstDEI	CTNAG	5 cut(s)	395, 461, 485, 877, 946
BstF5I	GGATG	3 cut(s)	456, 958, 1022
BstFNI	CGCG	1 cut(s)	72
BstKTI	GATC	2 cut(s)	14, 184
BstMBI	GATC	2 cut(s)	11, 181
BstMWI	GCNNNNNNNGC	5 cut(s)	543, 804, 816, 858, 867
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	4 cut(s)	192, 234, 584, 848
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	106
BstSLI	GKGCMC	1 cut(s)	821
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	4 cut(s)	530, 533, 794, 839
BstV2I	GAAGAC	5 cut(s)	177, 307, 724, 786, 984
BstX2I	RGATCY	1 cut(s)	11
BstYI	RGATCY	1 cut(s)	11
Bsu36I	CCTNAGG	1 cut(s)	395
BsuRI	GGCC	2 cut(s)	683, 731
BtsCI	GGATG	3 cut(s)	456, 958, 1022
BveI	ACCTGC	1 cut(s)	332
Cac8I	GCNNGC	2 cut(s)	850, 1026
CseI	GACGC	2 cut(s)	83, 573
Csp6I	GTAC	6 cut(s)	120, 218, 234, 331, 442, 842
CspCI	CAANNNNNGTGG	2 cut(s)	577, 612
CviAII	CATG	9 cut(s)	189, 231, 495, 581, 813, 839, 845, 963, 1012
CviQI	GTAC	6 cut(s)	120, 218, 234, 331, 442, 842
DdeI	CTNAG	5 cut(s)	395, 461, 485, 877, 946
DpnI	GATC	2 cut(s)	13, 183
DpnII	GATC	2 cut(s)	11, 181
EaeI	YGGCCR	1 cut(s)	681
Eam1104I	CTCTTC	1 cut(s)	694
EarI	CTCTTC	1 cut(s)	694
Ecl136II	GAGCTC	1 cut(s)	1047
Eco130I	CCWWGG	3 cut(s)	252, 472, 1050
Eco24I	GRGCYC	1 cut(s)	1049
Eco32I	GATATC	1 cut(s)	1009
Eco53kI	GAGCTC	1 cut(s)	1047
Eco81I	CCTNAGG	1 cut(s)	395
Eco88I	CYCGRG	1 cut(s)	78
EcoICRI	GAGCTC	1 cut(s)	1047
EcoRII	CCWGG	1 cut(s)	678
EcoRV	GATATC	1 cut(s)	1009
EcoT14I	CCWWGG	3 cut(s)	252, 472, 1050
EcoT22I	ATGCAT	1 cut(s)	749
EcoT38I	GRGCYC	1 cut(s)	1049
ErhI	CCWWGG	3 cut(s)	252, 472, 1050
FaeI	CATG	9 cut(s)	192, 234, 498, 584, 816, 842, 848, 966, 1015
FatI	CATG	9 cut(s)	188, 230, 494, 580, 812, 838, 844, 962, 1011
FauNDI	CATATG	1 cut(s)	749
FblI	GTMKAC	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	544, 547, 808, 853
FokI	GGATG	3 cut(s)	463, 965, 1029
FriOI	GRGCYC	1 cut(s)	1049
Fsp4HI	GCNGC	4 cut(s)	544, 547, 808, 853
FspBI	CTAG	4 cut(s)	253, 466, 825, 1042
GluI	GCNGC	4 cut(s)	544, 547, 808, 853
HaeIII	GGCC	2 cut(s)	683, 731
HgaI	GACGC	2 cut(s)	83, 573
Hin1I	GRCGYC	1 cut(s)	75
Hin1II	CATG	9 cut(s)	192, 234, 498, 584, 816, 842, 848, 966, 1015
HindIII	AAGCTT	1 cut(s)	997
HinfI	GANTC	5 cut(s)	607, 621, 782, 791, 834
HphI	GGTGA	2 cut(s)	668, 843
Hpy166II	GTNNAC	3 cut(s)	194, 236, 819
Hpy188I	TCNGA	5 cut(s)	430, 507, 617, 790, 1006
Hpy188III	TCNNGA	3 cut(s)	179, 280, 876
Hpy8I	GTNNAC	3 cut(s)	194, 236, 819
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	83, 441, 742
HpyCH4III	ACNGT	6 cut(s)	155, 338, 711, 723, 802, 1032
HpyCH4IV	ACGT	2 cut(s)	216, 224
HpyCH4V	TGCA	9 cut(s)	9, 230, 375, 667, 747, 819, 855, 861, 870
HpyF10VI	GCNNNNNNNGC	5 cut(s)	543, 804, 816, 858, 867
HpyF3I	CTNAG	5 cut(s)	395, 461, 485, 877, 946
HpySE526I	ACGT	2 cut(s)	216, 224
Hsp92I	GRCGYC	1 cut(s)	75
Hsp92II	CATG	9 cut(s)	192, 234, 498, 584, 816, 842, 848, 966, 1015
Kzo9I	GATC	2 cut(s)	11, 181
LmnI	GCTCC	4 cut(s)	27, 554, 605, 1052
Lsp1109I	GCAGC	4 cut(s)	530, 533, 794, 839
MaeI	CTAG	4 cut(s)	253, 466, 825, 1042
MaeII	ACGT	2 cut(s)	216, 224
MaeIII	GTNAC	1 cut(s)	941
MalI	GATC	2 cut(s)	13, 183
MboI	GATC	2 cut(s)	11, 181
MfeI	CAATTG	1 cut(s)	856
MflI	RGATCY	1 cut(s)	11
MhlI	GDGCHC	4 cut(s)	800, 821, 1030, 1049
MlsI	TGGCCA	1 cut(s)	683
MluCI	AATT	7 cut(s)	198, 265, 437, 568, 589, 686, 856
MluNI	TGGCCA	1 cut(s)	683
MlyI	GAGTC	2 cut(s)	601, 776
MmeI	TCCRAC	3 cut(s)	90, 295, 320
MnlI	CCTC	9 cut(s)	70, 73, 74, 336, 395, 647, 832, 1031, 1051
Mox20I	TGGCCA	1 cut(s)	683
Mph1103I	ATGCAT	1 cut(s)	749
MroXI	GAANNNNTTC	1 cut(s)	174
MscI	TGGCCA	1 cut(s)	683
MseI	TTAA	1 cut(s)	592
MslI	CAYNNNNRTG	2 cut(s)	752, 843
Msp20I	TGGCCA	1 cut(s)	683
MspA1I	CMGCKG	1 cut(s)	852
MspR9I	CCNGG	1 cut(s)	680
MunI	CAATTG	1 cut(s)	856
Mva1269I	GAATGC	1 cut(s)	669
MvaI	CCWGG	1 cut(s)	680
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	5 cut(s)	543, 804, 816, 858, 867
NdeI	CATATG	1 cut(s)	749
NdeII	GATC	2 cut(s)	11, 181
NlaIII	CATG	9 cut(s)	192, 234, 498, 584, 816, 842, 848, 966, 1015
NlaIV	GGNNCC	3 cut(s)	347, 601, 973
NsiI	ATGCAT	1 cut(s)	749
NspI	RCATGY	4 cut(s)	192, 234, 584, 848
PciI	ACATGT	1 cut(s)	188
PctI	GAATGC	1 cut(s)	669
PdmI	GAANNNNTTC	1 cut(s)	174
PfeI	GAWTC	3 cut(s)	621, 791, 834
PkrI	GCNGC	4 cut(s)	545, 548, 809, 854
PleI	GAGTC	2 cut(s)	601, 776
PpsI	GAGTC	2 cut(s)	601, 776
Ppu21I	YACGTR	1 cut(s)	225
PscI	ACATGT	1 cut(s)	188
PshBI	ATTAAT	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	1049
Psp6I	CCWGG	1 cut(s)	678
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	3 cut(s)	347, 601, 973
PsuI	RGATCY	1 cut(s)	11
PvuII	CAGCTG	1 cut(s)	852
RsaI	GTAC	6 cut(s)	121, 219, 235, 332, 443, 843
RsaNI	GTAC	6 cut(s)	120, 218, 234, 331, 442, 842
RseI	CAYNNNNRTG	2 cut(s)	752, 843
SacI	GAGCTC	1 cut(s)	1049
SaqAI	TTAA	1 cut(s)	592
SatI	GCNGC	4 cut(s)	544, 547, 808, 853
Sau3AI	GATC	2 cut(s)	11, 181
ScaI	AGTACT	1 cut(s)	121
SchI	GAGTC	2 cut(s)	601, 776
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	4 cut(s)	800, 821, 1030, 1049
SfcI	CTRYAG	1 cut(s)	106
SmiMI	CAYNNNNRTG	2 cut(s)	752, 843
SmlI	CTYRAG	1 cut(s)	651
SmoI	CTYRAG	1 cut(s)	651
Sse9I	AATT	7 cut(s)	198, 265, 437, 568, 589, 686, 856
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	4 cut(s)	253, 466, 825, 1042
SstI	GAGCTC	1 cut(s)	1049
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	3 cut(s)	252, 472, 1050
TaaI	ACNGT	6 cut(s)	155, 338, 711, 723, 802, 1032
TaiI	ACGT	2 cut(s)	219, 227
TaqI	TCGA	2 cut(s)	697, 794
TasI	AATT	7 cut(s)	198, 265, 437, 568, 589, 686, 856
TatI	WGTACW	4 cut(s)	119, 233, 441, 841
TfiI	GAWTC	3 cut(s)	621, 791, 834
Tru1I	TTAA	1 cut(s)	592
Tru9I	TTAA	1 cut(s)	592
TseI	GCWGC	4 cut(s)	543, 546, 807, 852
TspDTI	ATGAA	4 cut(s)	102, 277, 313, 483
VneI	GTGCAC	1 cut(s)	817
VspI	ATTAAT	1 cut(s)	592
XapI	RAATTY	1 cut(s)	686
XceI	RCATGY	4 cut(s)	192, 234, 584, 848
XmaJI	CCTAGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	193
XmnI	GAANNNNTTC	1 cut(s)	174
XspI	CTAG	4 cut(s)	253, 466, 825, 1042
ZrmI	AGTACT	1 cut(s)	121
Zsp2I	ATGCAT	1 cut(s)	749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.