Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0011077

Physical Location & Seq

Genomic Coordinates Forward (+)

2230847 .. 2233816

Gene Structure 2970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG031900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1437 bp

ATGGGCTCAATGAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTAGTTGCGCCGGTGGCCCTTGCGCGCACGTTGGCACTGACCCATGTTGCTCTGAGTGAACATTCGAAGAGCTACCAGCATGTGAAGGTGGCTTGGTTTTCTAAGAGGTCAAAGAAGAAGAAAAGGGTTGCATGTGAGTCTTTGAAAGAAGAGGTTACTTACCCAACTGCTGCTGCTGCTGCTTCTGTTTATGGCTACCCATATACTCGTTTACTTCCATGTCCCTCACAGAATGGACCACCAAGAGTTGAGCACTTGGTTGTTTCCGAAGGGGGCCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTCCTGCTCAGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACCGCGACGCCTGAGGAAATGAGGGTATATAAAGAAGCTACAGCACCATCAGTACTGAAAAAGAGAGCTTCTATAAAAGGAAAAACTGTAAGAGAAGCACAGAAGACTTTCAGGATCACACATGTAGACCAATTTGTTGAAGATGGAACGTACTTACGTGTGCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGCTGTTGGACAAACCTGCTGGTACAACAGTTGGAGGAACCACAGACAACATCGAAGAAAGTTGTGCAACCTTTACCTCCCGTGCCTTAGGACTGACAACCCCCCTGATGACCACACATCAGATTGATAATTGTACAGAAGGATGTGTTGTCTTAGCTAGAACCAAGGAGTATTGCTCAGTTTTTCATGGAAAAATCCGAGAAAAACAAGTGAGGAAACTTTATCTTGCTCTTGCTGCTGCTCCTGTGCCACTTGGAACAATTACTCACTACATGCGTCCAATTAATGTGGCTCCACGACTCATTTCAGAAGATTCCATTGAAAGGTGGAGTTTGTGTCAGCTTGAGGTGATGGAATGCAAGGAAGTTCCCTGGCCAAATTCTGTCATTGAAGAGAAATACGGTGTTGAAGACTGTGGGTGGCCTTCAAAAGATTATGCATATGAGTGTAAAATCAACCTTTTGACTGGGAAGACTCATCAGATTCGAGCACAGTTAGCTGCTCATGGTGCACCTCTAGTGGGTGATTCCATGTACATGCCAGCTACAATTGCAGAGATTGCAAGTCCTGAGCTGAACCCGTTTGGCAAACATAAGAAACATTATATTGGCGAAGATGAGAAAGAAATAGCTGTTACTGAGTGGATGGCACGGCATGGAAAGGAACCTAATGTTGCTATTGGTCTTCAAGCTTGTCAGATATCATGGGATGATGGCGAGCACAGTTTTGAGGCTAGAGCTCCTTGGTGGCGGTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

478

Amino Acids

53.35

Weight (kDa)

8.23

Isoelectric Point (pI)

48.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	224 - 393	2.2e-26	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21770 AT4G21770
fragaria_vesca	FvH4_3g02480 FvH4_3g02480 FvH4_3g02480
malus_domestica	MD10G1317000.v1.1 MD10G1317600.v1.1
prunus_persica	Prupe.4G024200_v2.0.a1
pyrus_communis	pycom10g26870
rosa_chinensis	RchiOBHm_Chr5g0003731
rosa_laevigata	RLG00000031171
rosa_multiflora	Rmu_co8501515.1_g000001 Rmu_sc0000500.1_g000006 Rmu_sc0033912.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072230
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033500 Rh5BG031900 Rh5CG036200
rosa_wichuraiana	Rw5G003090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	700
AccI	GTMKAC	1 cut(s)	561
AccII	CGCG	2 cut(s)	73, 440
AciI	CCGC	2 cut(s)	438, 1426
AclWI	GGATC	2 cut(s)	363, 557
AcoI	YGGCCR	1 cut(s)	1049
AcsI	RAATTY	1 cut(s)	1054
AcyI	GRCGYC	1 cut(s)	443
AfaI	GTAC	6 cut(s)	489, 587, 603, 700, 811, 1211
AfiI	CCNNNNNNNGG	2 cut(s)	999, 1196
AflIII	ACRYGT	2 cut(s)	556, 592
AgsI	TTSAA	7 cut(s)	193, 575, 998, 1067, 1085, 1104, 1364
AjnI	CCWGG	1 cut(s)	1046
Alw21I	GWGCWC	5 cut(s)	303, 1168, 1189, 1398, 1417
Alw44I	GTGCAC	1 cut(s)	1185
AlwI	GGATC	2 cut(s)	363, 557
AoxI	GGCC	4 cut(s)	63, 322, 1049, 1097
ApaI	GGGCCC	1 cut(s)	326
ApaLI	GTGCAC	1 cut(s)	1185
ApeKI	GCWGC	7 cut(s)	218, 221, 224, 227, 911, 914, 1175
ApoI	RAATTY	1 cut(s)	1054
AseI	ATTAAT	1 cut(s)	960
Asp700I	GAANNNNTTC	1 cut(s)	542
AspA2I	CCTAGG	1 cut(s)	620
AspLEI	GCGC	3 cut(s)	58, 73, 75
AspS9I	GGNCC	4 cut(s)	64, 284, 322, 323
AsuHPI	GGTGA	2 cut(s)	1036, 1211
AsuII	TTCGAA	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	284
AvrII	CCTAGG	1 cut(s)	620
AxyI	CCTNAGG	2 cut(s)	447, 763
BaeGI	GKGCMC	2 cut(s)	326, 1189
BaeI	ACNNNNGTAYC	2 cut(s)	690, 723
BalI	TGGCCA	1 cut(s)	1051
BanII	GRGCYC	3 cut(s)	8, 326, 1417
BbsI	GAAGAC	5 cut(s)	545, 675, 1092, 1154, 1352
Bbv12I	GWGCWC	5 cut(s)	303, 1168, 1189, 1398, 1417
BbvI	GCAGC	7 cut(s)	205, 208, 211, 214, 898, 901, 1162
BccI	CCATC	5 cut(s)	490, 572, 1021, 1315, 1382
BceAI	ACGGC	1 cut(s)	1343
BciT130I	CCWGG	1 cut(s)	1048
BfaI	CTAG	5 cut(s)	332, 621, 834, 1193, 1410
BfmI	CTRYAG	1 cut(s)	474
BfuAI	ACCTGC	1 cut(s)	700
BglII	AGATCT	1 cut(s)	379
BisI	GCNGC	7 cut(s)	219, 222, 225, 228, 912, 915, 1176
BlnI	CCTAGG	1 cut(s)	620
BlsI	GCNGC	7 cut(s)	220, 223, 226, 229, 913, 916, 1177
BmcAI	AGTACT	1 cut(s)	489
Bme1390I	CCNGG	1 cut(s)	1048
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	4 cut(s)	64, 284, 322, 323
BmiI	GGNNCC	5 cut(s)	323, 324, 715, 969, 1341
BmrFI	CCNGG	1 cut(s)	1048
BmrI	ACTGGG	1 cut(s)	1152
BmuI	ACTGGG	1 cut(s)	1152
BpiI	GAAGAC	5 cut(s)	545, 675, 1092, 1154, 1352
BplI	GAGNNNNNCTC	2 cut(s)	836, 868
Bpu10I	CCTNAGC	1 cut(s)	1245
Bpu14I	TTCGAA	1 cut(s)	113
BpuEI	CTTGAG	1 cut(s)	1040
BsaAI	YACGTR	1 cut(s)	593
BsaHI	GRCGYC	1 cut(s)	443
BsaJI	CCNNGG	4 cut(s)	620, 840, 1046, 1418
BsaXI	ACNNNNNCTCC	2 cut(s)	997, 1027
Bsc4I	CCNNNNNNNGG	2 cut(s)	999, 1196
Bse118I	RCCGGY	1 cut(s)	58
Bse1I	ACTGG	2 cut(s)	644, 1147
Bse21I	CCTNAGG	2 cut(s)	447, 763
BseBI	CCWGG	1 cut(s)	1048
BseDI	CCNNGG	4 cut(s)	620, 840, 1046, 1418
BseGI	GGATG	3 cut(s)	824, 1326, 1390
BseLI	CCNNNNNNNGG	2 cut(s)	999, 1196
BseMII	CTCAG	6 cut(s)	92, 380, 438, 867, 1236, 1305
BseNI	ACTGG	2 cut(s)	644, 1147
BsePI	GCGCGC	1 cut(s)	71
BseRI	GAGGAG	1 cut(s)	420
BseSI	GKGCMC	2 cut(s)	326, 1189
BseXI	GCAGC	7 cut(s)	205, 208, 211, 214, 898, 901, 1162
Bsh1236I	CGCG	2 cut(s)	73, 440
BshFI	GGCC	4 cut(s)	65, 324, 1051, 1099
BsiHKAI	GWGCWC	5 cut(s)	303, 1168, 1189, 1398, 1417
BsiSI	CCGG	2 cut(s)	43, 59
BslFI	GGGAC	1 cut(s)	255
BslI	CCNNNNNNNGG	2 cut(s)	999, 1196
BsmFI	GGGAC	1 cut(s)	255
BsmI	GAATGC	1 cut(s)	1037
BsnI	GGCC	4 cut(s)	65, 324, 1051, 1099
Bsp119I	TTCGAA	1 cut(s)	113
Bsp120I	GGGCCC	1 cut(s)	322
Bsp1286I	GDGCHC	7 cut(s)	8, 303, 326, 1168, 1189, 1398, 1417
Bsp1407I	TGTACA	3 cut(s)	601, 809, 1209
Bsp143I	GATC	3 cut(s)	355, 379, 549
BspACI	CCGC	2 cut(s)	438, 1426
BspANI	GGCC	4 cut(s)	65, 324, 1051, 1099
BspCNI	CTCAG	6 cut(s)	93, 379, 439, 866, 1237, 1306
BspFNI	CGCG	2 cut(s)	73, 440
BspLI	GGNNCC	5 cut(s)	323, 324, 715, 969, 1341
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	2 cut(s)	363, 557
BspQI	GCTCTTC	1 cut(s)	110
BspT104I	TTCGAA	1 cut(s)	113
BsrFI	RCCGGY	1 cut(s)	58
BsrGI	TGTACA	3 cut(s)	601, 809, 1209
BsrI	ACTGG	2 cut(s)	644, 1147
BssAI	RCCGGY	1 cut(s)	58
BssECI	CCNNGG	4 cut(s)	620, 840, 1046, 1418
BssHII	GCGCGC	1 cut(s)	71
BssMI	GATC	3 cut(s)	355, 379, 549
BssNI	GRCGYC	1 cut(s)	443
BssT1I	CCWWGG	3 cut(s)	620, 840, 1418
Bst2UI	CCWGG	1 cut(s)	1048
Bst4CI	ACNGT	6 cut(s)	523, 706, 1079, 1091, 1170, 1400
Bst6I	CTCTTC	3 cut(s)	110, 192, 1062
BstACI	GRCGYC	1 cut(s)	443
BstAPI	GCANNNNNTGC	1 cut(s)	1235
BstAUI	TGTACA	3 cut(s)	601, 809, 1209
BstBAI	YACGTR	1 cut(s)	593
BstBI	TTCGAA	1 cut(s)	113
BstC8I	GCNNGC	3 cut(s)	73, 1218, 1394
BstDEI	CTNAG	9 cut(s)	101, 150, 366, 447, 763, 829, 853, 1245, 1314
BstF5I	GGATG	3 cut(s)	824, 1326, 1390
BstFNI	CGCG	2 cut(s)	73, 440
BstHHI	GCGC	3 cut(s)	58, 73, 75
BstKTI	GATC	3 cut(s)	358, 382, 552
BstMBI	GATC	3 cut(s)	355, 379, 549
BstMWI	GCNNNNNNNGC	8 cut(s)	62, 224, 227, 911, 1172, 1184, 1226, 1235
BstNI	CCWGG	1 cut(s)	1048
BstNSI	RCATGY	6 cut(s)	131, 183, 560, 602, 952, 1216
BstSCI	CCNGG	1 cut(s)	1046
BstSFI	CTRYAG	1 cut(s)	474
BstSLI	GKGCMC	2 cut(s)	326, 1189
BstUI	CGCG	2 cut(s)	73, 440
BstV1I	GCAGC	7 cut(s)	205, 208, 211, 214, 898, 901, 1162
BstV2I	GAAGAC	5 cut(s)	545, 675, 1092, 1154, 1352
BstX2I	RGATCY	2 cut(s)	355, 379
BstYI	RGATCY	2 cut(s)	355, 379
Bsu36I	CCTNAGG	2 cut(s)	447, 763
BsuRI	GGCC	4 cut(s)	65, 324, 1051, 1099
BtsCI	GGATG	3 cut(s)	824, 1326, 1390
BtsIMutI	CAGTG	1 cut(s)	83
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	3 cut(s)	73, 1218, 1394
CfoI	GCGC	3 cut(s)	58, 73, 75
Cfr10I	RCCGGY	1 cut(s)	58
Cfr13I	GGNCC	4 cut(s)	64, 284, 322, 323
CseI	GACGC	2 cut(s)	451, 941
Csp6I	GTAC	6 cut(s)	488, 586, 602, 699, 810, 1210
CspCI	CAANNNNNGTGG	2 cut(s)	945, 980
CviQI	GTAC	6 cut(s)	488, 586, 602, 699, 810, 1210
DdeI	CTNAG	9 cut(s)	101, 150, 366, 447, 763, 829, 853, 1245, 1314
DpnI	GATC	3 cut(s)	357, 381, 551
DpnII	GATC	3 cut(s)	355, 379, 549
EaeI	YGGCCR	1 cut(s)	1049
Eam1104I	CTCTTC	3 cut(s)	110, 192, 1062
EarI	CTCTTC	3 cut(s)	110, 192, 1062
Ecl136II	GAGCTC	1 cut(s)	1415
Eco130I	CCWWGG	3 cut(s)	620, 840, 1418
Eco24I	GRGCYC	3 cut(s)	8, 326, 1417
Eco32I	GATATC	1 cut(s)	1377
Eco47I	GGWCC	1 cut(s)	284
Eco53kI	GAGCTC	1 cut(s)	1415
Eco81I	CCTNAGG	2 cut(s)	447, 763
EcoICRI	GAGCTC	1 cut(s)	1415
EcoO109I	RGGNCCY	2 cut(s)	322, 323
EcoRII	CCWGG	1 cut(s)	1046
EcoRV	GATATC	1 cut(s)	1377
EcoT14I	CCWWGG	3 cut(s)	620, 840, 1418
EcoT22I	ATGCAT	1 cut(s)	1117
EcoT38I	GRGCYC	3 cut(s)	8, 326, 1417
ErhI	CCWWGG	3 cut(s)	620, 840, 1418
FaqI	GGGAC	1 cut(s)	255
FauNDI	CATATG	1 cut(s)	1117
FblI	GTMKAC	1 cut(s)	561
Fnu4HI	GCNGC	7 cut(s)	219, 222, 225, 228, 912, 915, 1176
FokI	GGATG	3 cut(s)	831, 1333, 1397
FriOI	GRGCYC	3 cut(s)	8, 326, 1417
Fsp4HI	GCNGC	7 cut(s)	219, 222, 225, 228, 912, 915, 1176
FspBI	CTAG	5 cut(s)	332, 621, 834, 1193, 1410
GlaI	GCGC	3 cut(s)	57, 72, 74
GluI	GCNGC	7 cut(s)	219, 222, 225, 228, 912, 915, 1176
HaeIII	GGCC	4 cut(s)	65, 324, 1051, 1099
HapII	CCGG	2 cut(s)	43, 59
HgaI	GACGC	2 cut(s)	451, 941
HhaI	GCGC	3 cut(s)	58, 73, 75
Hin1I	GRCGYC	1 cut(s)	443
Hin6I	GCGC	3 cut(s)	56, 71, 73
HinP1I	GCGC	3 cut(s)	56, 71, 73
HindIII	AAGCTT	1 cut(s)	1365
HinfI	GANTC	7 cut(s)	13, 185, 975, 989, 1150, 1159, 1202
HpaII	CCGG	2 cut(s)	43, 59
HphI	GGTGA	2 cut(s)	1036, 1211
Hpy166II	GTNNAC	5 cut(s)	107, 260, 562, 604, 1187
Hpy188I	TCNGA	8 cut(s)	18, 102, 316, 798, 875, 985, 1158, 1374
Hpy188III	TCNNGA	5 cut(s)	332, 353, 547, 648, 1244
Hpy8I	GTNNAC	5 cut(s)	107, 260, 562, 604, 1187
Hpy99I	CGWCG	1 cut(s)	445
HpyAV	CCTTC	4 cut(s)	127, 311, 809, 1110
HpyCH4III	ACNGT	6 cut(s)	523, 706, 1079, 1091, 1170, 1400
HpyCH4IV	ACGT	3 cut(s)	77, 584, 592
HpyF10VI	GCNNNNNNNGC	8 cut(s)	62, 224, 227, 911, 1172, 1184, 1226, 1235
HpyF3I	CTNAG	9 cut(s)	101, 150, 366, 447, 763, 829, 853, 1245, 1314
HpySE526I	ACGT	3 cut(s)	77, 584, 592
Hsp92I	GRCGYC	1 cut(s)	443
HspAI	GCGC	3 cut(s)	56, 71, 73
Kzo9I	GATC	3 cut(s)	355, 379, 549
LguI	GCTCTTC	1 cut(s)	110
LmnI	GCTCC	4 cut(s)	395, 922, 973, 1420
Lsp1109I	GCAGC	7 cut(s)	205, 208, 211, 214, 898, 901, 1162
MaeI	CTAG	5 cut(s)	332, 621, 834, 1193, 1410
MaeII	ACGT	3 cut(s)	77, 584, 592
MaeIII	GTNAC	2 cut(s)	202, 1309
MalI	GATC	3 cut(s)	357, 381, 551
MboI	GATC	3 cut(s)	355, 379, 549
MfeI	CAATTG	1 cut(s)	1224
MflI	RGATCY	2 cut(s)	355, 379
MhlI	GDGCHC	7 cut(s)	8, 303, 326, 1168, 1189, 1398, 1417
MlsI	TGGCCA	1 cut(s)	1051
MluCI	AATT	7 cut(s)	566, 633, 805, 936, 957, 1054, 1224
MluNI	TGGCCA	1 cut(s)	1051
MlyI	GAGTC	4 cut(s)	22, 194, 969, 1144
MmeI	TCCRAC	3 cut(s)	458, 663, 688
Mox20I	TGGCCA	1 cut(s)	1051
Mph1103I	ATGCAT	1 cut(s)	1117
MroXI	GAANNNNTTC	1 cut(s)	542
MscI	TGGCCA	1 cut(s)	1051
MseI	TTAA	1 cut(s)	960
MslI	CAYNNNNRTG	2 cut(s)	1120, 1211
Msp20I	TGGCCA	1 cut(s)	1051
MspI	CCGG	2 cut(s)	43, 59
MspR9I	CCNGG	1 cut(s)	1048
MunI	CAATTG	1 cut(s)	1224
Mva1269I	GAATGC	1 cut(s)	1037
MvaI	CCWGG	1 cut(s)	1048
MvnI	CGCG	2 cut(s)	73, 440
MwoI	GCNNNNNNNGC	8 cut(s)	62, 224, 227, 911, 1172, 1184, 1226, 1235
NdeI	CATATG	1 cut(s)	1117
NdeII	GATC	3 cut(s)	355, 379, 549
NlaIV	GGNNCC	5 cut(s)	323, 324, 715, 969, 1341
NsiI	ATGCAT	1 cut(s)	1117
NspI	RCATGY	6 cut(s)	131, 183, 560, 602, 952, 1216
NspV	TTCGAA	1 cut(s)	113
PauI	GCGCGC	1 cut(s)	71
PciI	ACATGT	1 cut(s)	556
PciSI	GCTCTTC	1 cut(s)	110
PctI	GAATGC	1 cut(s)	1037
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	989, 1159, 1202
PkrI	GCNGC	7 cut(s)	220, 223, 226, 229, 913, 916, 1177
PleI	GAGTC	4 cut(s)	21, 193, 969, 1144
PpsI	GAGTC	4 cut(s)	21, 193, 969, 1144
Ppu21I	YACGTR	1 cut(s)	593
PscI	ACATGT	1 cut(s)	556
PshBI	ATTAAT	1 cut(s)	960
Psp124BI	GAGCTC	1 cut(s)	1417
Psp6I	CCWGG	1 cut(s)	1046
PspGI	CCWGG	1 cut(s)	1046
PspN4I	GGNNCC	5 cut(s)	323, 324, 715, 969, 1341
PspOMI	GGGCCC	1 cut(s)	322
PspPI	GGNCC	4 cut(s)	64, 284, 322, 323
PsuI	RGATCY	2 cut(s)	355, 379
PteI	GCGCGC	1 cut(s)	71
RsaI	GTAC	6 cut(s)	489, 587, 603, 700, 811, 1211
RsaNI	GTAC	6 cut(s)	488, 586, 602, 699, 810, 1210
RseI	CAYNNNNRTG	2 cut(s)	1120, 1211
SacI	GAGCTC	1 cut(s)	1417
SapI	GCTCTTC	1 cut(s)	110
SaqAI	TTAA	1 cut(s)	960
SatI	GCNGC	7 cut(s)	219, 222, 225, 228, 912, 915, 1176
Sau3AI	GATC	3 cut(s)	355, 379, 549
Sau96I	GGNCC	4 cut(s)	64, 284, 322, 323
ScaI	AGTACT	1 cut(s)	489
SchI	GAGTC	4 cut(s)	22, 194, 969, 1144
ScrFI	CCNGG	1 cut(s)	1048
SduI	GDGCHC	7 cut(s)	8, 303, 326, 1168, 1189, 1398, 1417
SfcI	CTRYAG	1 cut(s)	474
SfuI	TTCGAA	1 cut(s)	113
SgrAI	CRCCGGYG	1 cut(s)	58
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	2 cut(s)	1120, 1211
SmlI	CTYRAG	1 cut(s)	1019
SmoI	CTYRAG	1 cut(s)	1019
Sse9I	AATT	7 cut(s)	566, 633, 805, 936, 957, 1054, 1224
SsiI	CCGC	2 cut(s)	438, 1426
SspMI	CTAG	5 cut(s)	332, 621, 834, 1193, 1410
SstI	GAGCTC	1 cut(s)	1417
StyD4I	CCNGG	1 cut(s)	1046
StyI	CCWWGG	3 cut(s)	620, 840, 1418
TaaI	ACNGT	6 cut(s)	523, 706, 1079, 1091, 1170, 1400
TaiI	ACGT	3 cut(s)	80, 587, 595
TaqI	TCGA	3 cut(s)	113, 729, 1162
TasI	AATT	7 cut(s)	566, 633, 805, 936, 957, 1054, 1224
TatI	WGTACW	4 cut(s)	487, 601, 809, 1209
TfiI	GAWTC	3 cut(s)	989, 1159, 1202
Tru1I	TTAA	1 cut(s)	960
Tru9I	TTAA	1 cut(s)	960
TscAI	CASTG	1 cut(s)	90
TseI	GCWGC	7 cut(s)	218, 221, 224, 227, 911, 914, 1175
TspDTI	ATGAA	3 cut(s)	645, 681, 851
TspRI	CASTG	1 cut(s)	90
VneI	GTGCAC	1 cut(s)	1185
VpaK11BI	GGWCC	1 cut(s)	284
VspI	ATTAAT	1 cut(s)	960
XapI	RAATTY	1 cut(s)	1054
XbaI	TCTAGA	1 cut(s)	331
XceI	RCATGY	6 cut(s)	131, 183, 560, 602, 952, 1216
XmaJI	CCTAGG	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	561
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	5 cut(s)	332, 621, 834, 1193, 1410
ZrmI	AGTACT	1 cut(s)	489
Zsp2I	ATGCAT	1 cut(s)	1117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.