Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0011077

Physical Location & Seq

Genomic Coordinates Forward (+)

2856852 .. 2859847

Gene Structure 2996 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G003090.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1428 bp

ATGAGTCTGACTTCACTTCTGGGTCATGGTTGCCGGAGTTTAGTTGCGCCGGTGGCCCTTGCGCGCACGTTGGCACTGACCCATGTTGCTCTGGGTGAACATTCGAAGAGCTACCAGCATGTGAAGGTGGCTTGGTTTTCTAAGAGGTCAAAGAAGAAGAAAAGGGCTGCATGTGAGTCTTTGAAACAAGAGGTTACTTACCCAACTGCTGCTGCTGCTGCTTCTGTTTATGGCTACCCATATACTCGTTTACTTCCATGTCCCTCACAGAATGGACCACCAAGAGTTGAGCACTTGGTTGTTTCCGAAGGGGGCCCTGTTCTAGAATATATATGCAAAAATCTGGATCTTCCTGCTCAGTTTGTTGCAGATCTTATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACCGCGACGCCCGAGGAAATGAAGGTATATAAAGAAGCTACAGCACCATCAGTACTGAAAAAGAGAGCTTCTATAAAAGGAAAAACTGTAAGAGAAGCACAGAAGACTTTCAGGATCACACATGTAGACCAATTTGTTGAAGATGGAACGTACTTACGTGTGCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAGTTATAGCAGTAAATGAAGACTTTGTGGTGTTGGACAAACCTGCTGGTACAACAGTTGGAGGAACCACAGACAACATTGAAGAAAGTTGTGCAACCTTTACCTCCCGTGCCTTAGGACTAACAACCCCCCTGATGACCACACATCAGATTGATAATTGTACAGAAGGATGTGTTGTCTTAGCTAGAACCAAGGAGTATTGCTCAGTTTTTCATGGAAAAATCCGAGAAAAACAAGTGAAGAAACTTTATCTTGCTCTTGCTGCTGCTCCTGTGCCACTTGGAACAATTACTCACTACATGCGTCCAATTAATGTGGCTCCACGACTCATTTCAGAAGATTCCATTGAAAGGTGGAGTTTGTGTCAGCTTGAGGTGATGGAATGCAAGAAAGTTCCCTGGCCAAATTCTGTCATCGAAGAGAAATACGGTGTTGAAGACTGTGGGTGGCCTTCAAAAGATTATGCATATGAGTGTAAAATCAACCTTTTGACTGGGAAGACTCATCAGATTCGAGCACAGTTAGCTGCTCATGGTGCACCTCTAGTGGGTGATTCCATGTACATGCCAGCTGCAATAGCAGAGATTGCAAGTCCTGAGCTGAACCCGTTTGGCAAACATAAGAAACATTATATTGGCGAAGATGAGAAAGAAATAGCTGTTACTGAGTGGATGGCACGGCATGGAAAGGAACCTAATGTTGCTATTGGTCTTCAAGCTTGTCAGATATCATGGGATGATGGCGAGCACAGTTTTGAGGCTAGAGCTCCTTGGTGGAGGTGTGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0006139 GO:0006206 GO:0006213 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008655 GO:0009058 GO:0009112 GO:0009116 GO:0009119 GO:0009451 GO:0009982 GO:0009987 GO:0016070 GO:0016853 GO:0016866 GO:0018130 GO:0019438 GO:0019858 GO:0034641 GO:0034654 GO:0043094 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0046087 GO:0046131 GO:0046483 GO:0055086 GO:0071704 GO:0072527 GO:0072528 GO:0090304 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901657

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PseudoU_synth_2

Protein Analysis

475

Amino Acids

52.91

Weight (kDa)

8.55

Isoelectric Point (pI)

48.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PseudoU_synth_2	PF00849	221 - 390	7.9e-27	RNA pseudouridylate synthase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011077)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21770 AT4G21770
fragaria_vesca	FvH4_3g02480 FvH4_3g02480 FvH4_3g02480
malus_domestica	MD10G1317000.v1.1 MD10G1317600.v1.1
prunus_persica	Prupe.4G024200_v2.0.a1
pyrus_communis	pycom10g26870
rosa_chinensis	RchiOBHm_Chr5g0003731
rosa_laevigata	RLG00000031171
rosa_multiflora	Rmu_co8501515.1_g000001 Rmu_sc0000500.1_g000006 Rmu_sc0033912.1_g000005
rosa_roxburghii	Rroxscaffold_1G00072230
rosa_rugosa	Rorug04G0406500
rosa_samantha	Rh5AG033500 Rh5BG031900 Rh5CG036200
rosa_wichuraiana	Rw5G003090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	691
AccI	GTMKAC	1 cut(s)	552
AccII	CGCG	2 cut(s)	64, 431
AciI	CCGC	1 cut(s)	429
AclWI	GGATC	2 cut(s)	354, 548
AcoI	YGGCCR	1 cut(s)	1040
AcsI	RAATTY	1 cut(s)	1045
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	6 cut(s)	480, 578, 594, 691, 802, 1202
AfiI	CCNNNNNNNGG	2 cut(s)	990, 1187
AflIII	ACRYGT	2 cut(s)	547, 583
AgsI	TTSAA	7 cut(s)	184, 566, 722, 989, 1076, 1095, 1355
AjnI	CCWGG	1 cut(s)	1037
Alw21I	GWGCWC	5 cut(s)	294, 1159, 1180, 1389, 1408
Alw44I	GTGCAC	1 cut(s)	1176
AlwI	GGATC	2 cut(s)	354, 548
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	4 cut(s)	54, 313, 1040, 1088
ApaI	GGGCCC	1 cut(s)	317
ApaLI	GTGCAC	1 cut(s)	1176
ApeKI	GCWGC	9 cut(s)	167, 209, 212, 215, 218, 902, 905, 1166, 1211
ApoI	RAATTY	1 cut(s)	1045
AseI	ATTAAT	1 cut(s)	951
Asp700I	GAANNNNTTC	1 cut(s)	533
AspA2I	CCTAGG	1 cut(s)	611
AspLEI	GCGC	3 cut(s)	49, 64, 66
AspS9I	GGNCC	4 cut(s)	55, 275, 313, 314
AsuHPI	GGTGA	3 cut(s)	107, 1027, 1202
AsuII	TTCGAA	1 cut(s)	104
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	275
AvrII	CCTAGG	1 cut(s)	611
AxyI	CCTNAGG	1 cut(s)	754
BaeGI	GKGCMC	2 cut(s)	317, 1180
BaeI	ACNNNNGTAYC	2 cut(s)	681, 714
BalI	TGGCCA	1 cut(s)	1042
BanII	GRGCYC	2 cut(s)	317, 1408
BbsI	GAAGAC	5 cut(s)	536, 666, 1083, 1145, 1343
Bbv12I	GWGCWC	5 cut(s)	294, 1159, 1180, 1389, 1408
BbvI	GCAGC	9 cut(s)	154, 196, 199, 202, 205, 889, 892, 1153, 1198
BccI	CCATC	5 cut(s)	481, 563, 1012, 1306, 1373
BceAI	ACGGC	1 cut(s)	1334
BciT130I	CCWGG	1 cut(s)	1039
BfaI	CTAG	5 cut(s)	323, 612, 825, 1184, 1401
BfmI	CTRYAG	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	691
BglII	AGATCT	1 cut(s)	370
BisI	GCNGC	9 cut(s)	168, 210, 213, 216, 219, 903, 906, 1167, 1212
BlnI	CCTAGG	1 cut(s)	611
BlsI	GCNGC	9 cut(s)	169, 211, 214, 217, 220, 904, 907, 1168, 1213
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	1 cut(s)	1039
Bme18I	GGWCC	1 cut(s)	275
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	4 cut(s)	55, 275, 313, 314
BmiI	GGNNCC	5 cut(s)	314, 315, 706, 960, 1332
BmrFI	CCNGG	1 cut(s)	1039
BmrI	ACTGGG	1 cut(s)	1143
BmuI	ACTGGG	1 cut(s)	1143
BpiI	GAAGAC	5 cut(s)	536, 666, 1083, 1145, 1343
BplI	GAGNNNNNCTC	2 cut(s)	827, 859
Bpu10I	CCTNAGC	1 cut(s)	1236
Bpu14I	TTCGAA	1 cut(s)	104
BpuEI	CTTGAG	1 cut(s)	1031
BsaAI	YACGTR	1 cut(s)	584
BsaHI	GRCGYC	1 cut(s)	434
BsaJI	CCNNGG	5 cut(s)	438, 611, 831, 1037, 1409
BsaXI	ACNNNNNCTCC	2 cut(s)	988, 1018
Bsc4I	CCNNNNNNNGG	2 cut(s)	990, 1187
Bse118I	RCCGGY	1 cut(s)	49
Bse1I	ACTGG	2 cut(s)	635, 1138
Bse21I	CCTNAGG	1 cut(s)	754
BseBI	CCWGG	1 cut(s)	1039
BseDI	CCNNGG	5 cut(s)	438, 611, 831, 1037, 1409
BseGI	GGATG	3 cut(s)	815, 1317, 1381
BseLI	CCNNNNNNNGG	2 cut(s)	990, 1187
BseMII	CTCAG	4 cut(s)	371, 858, 1227, 1296
BseNI	ACTGG	2 cut(s)	635, 1138
BsePI	GCGCGC	1 cut(s)	62
BseRI	GAGGAG	1 cut(s)	411
BseSI	GKGCMC	2 cut(s)	317, 1180
BseXI	GCAGC	9 cut(s)	154, 196, 199, 202, 205, 889, 892, 1153, 1198
Bsh1236I	CGCG	2 cut(s)	64, 431
BshFI	GGCC	4 cut(s)	56, 315, 1042, 1090
BsiHKAI	GWGCWC	5 cut(s)	294, 1159, 1180, 1389, 1408
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	2 cut(s)	34, 50
BslFI	GGGAC	1 cut(s)	246
BslI	CCNNNNNNNGG	2 cut(s)	990, 1187
BsmFI	GGGAC	1 cut(s)	246
BsmI	GAATGC	1 cut(s)	1028
BsnI	GGCC	4 cut(s)	56, 315, 1042, 1090
BsoBI	CYCGRG	1 cut(s)	437
Bsp119I	TTCGAA	1 cut(s)	104
Bsp120I	GGGCCC	1 cut(s)	313
Bsp1286I	GDGCHC	6 cut(s)	294, 317, 1159, 1180, 1389, 1408
Bsp1407I	TGTACA	3 cut(s)	592, 800, 1200
Bsp143I	GATC	3 cut(s)	346, 370, 540
BspACI	CCGC	1 cut(s)	429
BspANI	GGCC	4 cut(s)	56, 315, 1042, 1090
BspCNI	CTCAG	4 cut(s)	370, 857, 1228, 1297
BspFNI	CGCG	2 cut(s)	64, 431
BspLI	GGNNCC	5 cut(s)	314, 315, 706, 960, 1332
BspMI	ACCTGC	1 cut(s)	691
BspPI	GGATC	2 cut(s)	354, 548
BspQI	GCTCTTC	1 cut(s)	101
BspT104I	TTCGAA	1 cut(s)	104
BsrFI	RCCGGY	1 cut(s)	49
BsrGI	TGTACA	3 cut(s)	592, 800, 1200
BsrI	ACTGG	2 cut(s)	635, 1138
BssAI	RCCGGY	1 cut(s)	49
BssECI	CCNNGG	5 cut(s)	438, 611, 831, 1037, 1409
BssHII	GCGCGC	1 cut(s)	62
BssMI	GATC	3 cut(s)	346, 370, 540
BssNI	GRCGYC	1 cut(s)	434
BssT1I	CCWWGG	3 cut(s)	611, 831, 1409
Bst2UI	CCWGG	1 cut(s)	1039
Bst4CI	ACNGT	6 cut(s)	514, 697, 1070, 1082, 1161, 1391
Bst6I	CTCTTC	2 cut(s)	101, 1053
BstACI	GRCGYC	1 cut(s)	434
BstAPI	GCANNNNNTGC	1 cut(s)	1226
BstAUI	TGTACA	3 cut(s)	592, 800, 1200
BstBAI	YACGTR	1 cut(s)	584
BstBI	TTCGAA	1 cut(s)	104
BstC8I	GCNNGC	3 cut(s)	64, 1209, 1385
BstDEI	CTNAG	7 cut(s)	141, 357, 754, 820, 844, 1236, 1305
BstF5I	GGATG	3 cut(s)	815, 1317, 1381
BstFNI	CGCG	2 cut(s)	64, 431
BstHHI	GCGC	3 cut(s)	49, 64, 66
BstKTI	GATC	3 cut(s)	349, 373, 543
BstMBI	GATC	3 cut(s)	346, 370, 540
BstMWI	GCNNNNNNNGC	8 cut(s)	53, 215, 218, 902, 1163, 1175, 1217, 1226
BstNI	CCWGG	1 cut(s)	1039
BstNSI	RCATGY	6 cut(s)	122, 174, 551, 593, 943, 1207
BstSCI	CCNGG	1 cut(s)	1037
BstSFI	CTRYAG	1 cut(s)	465
BstSLI	GKGCMC	2 cut(s)	317, 1180
BstUI	CGCG	2 cut(s)	64, 431
BstV1I	GCAGC	9 cut(s)	154, 196, 199, 202, 205, 889, 892, 1153, 1198
BstV2I	GAAGAC	5 cut(s)	536, 666, 1083, 1145, 1343
BstX2I	RGATCY	2 cut(s)	346, 370
BstYI	RGATCY	2 cut(s)	346, 370
Bsu36I	CCTNAGG	1 cut(s)	754
BsuRI	GGCC	4 cut(s)	56, 315, 1042, 1090
BtsCI	GGATG	3 cut(s)	815, 1317, 1381
BtsIMutI	CAGTG	1 cut(s)	74
BveI	ACCTGC	1 cut(s)	691
Cac8I	GCNNGC	3 cut(s)	64, 1209, 1385
CfoI	GCGC	3 cut(s)	49, 64, 66
Cfr10I	RCCGGY	1 cut(s)	49
Cfr13I	GGNCC	4 cut(s)	55, 275, 313, 314
CseI	GACGC	2 cut(s)	442, 932
Csp6I	GTAC	6 cut(s)	479, 577, 593, 690, 801, 1201
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviQI	GTAC	6 cut(s)	479, 577, 593, 690, 801, 1201
DdeI	CTNAG	7 cut(s)	141, 357, 754, 820, 844, 1236, 1305
DpnI	GATC	3 cut(s)	348, 372, 542
DpnII	GATC	3 cut(s)	346, 370, 540
EaeI	YGGCCR	1 cut(s)	1040
Eam1104I	CTCTTC	2 cut(s)	101, 1053
EarI	CTCTTC	2 cut(s)	101, 1053
Ecl136II	GAGCTC	1 cut(s)	1406
Eco130I	CCWWGG	3 cut(s)	611, 831, 1409
Eco24I	GRGCYC	2 cut(s)	317, 1408
Eco32I	GATATC	1 cut(s)	1368
Eco47I	GGWCC	1 cut(s)	275
Eco53kI	GAGCTC	1 cut(s)	1406
Eco81I	CCTNAGG	1 cut(s)	754
Eco88I	CYCGRG	1 cut(s)	437
EcoICRI	GAGCTC	1 cut(s)	1406
EcoO109I	RGGNCCY	2 cut(s)	313, 314
EcoRII	CCWGG	1 cut(s)	1037
EcoRV	GATATC	1 cut(s)	1368
EcoT14I	CCWWGG	3 cut(s)	611, 831, 1409
EcoT22I	ATGCAT	1 cut(s)	1108
EcoT38I	GRGCYC	2 cut(s)	317, 1408
ErhI	CCWWGG	3 cut(s)	611, 831, 1409
FaqI	GGGAC	1 cut(s)	246
FauNDI	CATATG	1 cut(s)	1108
FblI	GTMKAC	1 cut(s)	552
Fnu4HI	GCNGC	9 cut(s)	168, 210, 213, 216, 219, 903, 906, 1167, 1212
FokI	GGATG	3 cut(s)	822, 1324, 1388
FriOI	GRGCYC	2 cut(s)	317, 1408
Fsp4HI	GCNGC	9 cut(s)	168, 210, 213, 216, 219, 903, 906, 1167, 1212
FspBI	CTAG	5 cut(s)	323, 612, 825, 1184, 1401
GlaI	GCGC	3 cut(s)	48, 63, 65
GluI	GCNGC	9 cut(s)	168, 210, 213, 216, 219, 903, 906, 1167, 1212
HaeIII	GGCC	4 cut(s)	56, 315, 1042, 1090
HapII	CCGG	2 cut(s)	34, 50
HgaI	GACGC	2 cut(s)	442, 932
HhaI	GCGC	3 cut(s)	49, 64, 66
Hin1I	GRCGYC	1 cut(s)	434
Hin6I	GCGC	3 cut(s)	47, 62, 64
HinP1I	GCGC	3 cut(s)	47, 62, 64
HindIII	AAGCTT	1 cut(s)	1356
HinfI	GANTC	7 cut(s)	4, 176, 966, 980, 1141, 1150, 1193
HpaII	CCGG	2 cut(s)	34, 50
HphI	GGTGA	3 cut(s)	107, 1027, 1202
Hpy166II	GTNNAC	5 cut(s)	98, 251, 553, 595, 1178
Hpy188I	TCNGA	7 cut(s)	9, 307, 789, 866, 976, 1149, 1365
Hpy188III	TCNNGA	5 cut(s)	323, 344, 538, 639, 1235
Hpy8I	GTNNAC	5 cut(s)	98, 251, 553, 595, 1178
Hpy99I	CGWCG	1 cut(s)	436
HpyAV	CCTTC	5 cut(s)	118, 302, 442, 800, 1101
HpyCH4III	ACNGT	6 cut(s)	514, 697, 1070, 1082, 1161, 1391
HpyCH4IV	ACGT	3 cut(s)	68, 575, 583
HpyF10VI	GCNNNNNNNGC	8 cut(s)	53, 215, 218, 902, 1163, 1175, 1217, 1226
HpyF3I	CTNAG	7 cut(s)	141, 357, 754, 820, 844, 1236, 1305
HpySE526I	ACGT	3 cut(s)	68, 575, 583
Hsp92I	GRCGYC	1 cut(s)	434
HspAI	GCGC	3 cut(s)	47, 62, 64
Kzo9I	GATC	3 cut(s)	346, 370, 540
LguI	GCTCTTC	1 cut(s)	101
LmnI	GCTCC	4 cut(s)	386, 913, 964, 1411
Lsp1109I	GCAGC	9 cut(s)	154, 196, 199, 202, 205, 889, 892, 1153, 1198
MaeI	CTAG	5 cut(s)	323, 612, 825, 1184, 1401
MaeII	ACGT	3 cut(s)	68, 575, 583
MaeIII	GTNAC	2 cut(s)	193, 1300
MalI	GATC	3 cut(s)	348, 372, 542
MboI	GATC	3 cut(s)	346, 370, 540
MflI	RGATCY	2 cut(s)	346, 370
MhlI	GDGCHC	6 cut(s)	294, 317, 1159, 1180, 1389, 1408
MlsI	TGGCCA	1 cut(s)	1042
MluCI	AATT	6 cut(s)	557, 624, 796, 927, 948, 1045
MluNI	TGGCCA	1 cut(s)	1042
MlyI	GAGTC	4 cut(s)	13, 185, 960, 1135
MmeI	TCCRAC	3 cut(s)	449, 654, 679
Mox20I	TGGCCA	1 cut(s)	1042
Mph1103I	ATGCAT	1 cut(s)	1108
MroXI	GAANNNNTTC	1 cut(s)	533
MscI	TGGCCA	1 cut(s)	1042
MseI	TTAA	1 cut(s)	951
MslI	CAYNNNNRTG	2 cut(s)	1111, 1202
Msp20I	TGGCCA	1 cut(s)	1042
MspA1I	CMGCKG	1 cut(s)	1211
MspI	CCGG	2 cut(s)	34, 50
MspR9I	CCNGG	1 cut(s)	1039
Mva1269I	GAATGC	1 cut(s)	1028
MvaI	CCWGG	1 cut(s)	1039
MvnI	CGCG	2 cut(s)	64, 431
MwoI	GCNNNNNNNGC	8 cut(s)	53, 215, 218, 902, 1163, 1175, 1217, 1226
NdeI	CATATG	1 cut(s)	1108
NdeII	GATC	3 cut(s)	346, 370, 540
NlaIV	GGNNCC	5 cut(s)	314, 315, 706, 960, 1332
NsiI	ATGCAT	1 cut(s)	1108
NspI	RCATGY	6 cut(s)	122, 174, 551, 593, 943, 1207
NspV	TTCGAA	1 cut(s)	104
PauI	GCGCGC	1 cut(s)	62
PciI	ACATGT	1 cut(s)	547
PciSI	GCTCTTC	1 cut(s)	101
PctI	GAATGC	1 cut(s)	1028
PdmI	GAANNNNTTC	1 cut(s)	533
PfeI	GAWTC	3 cut(s)	980, 1150, 1193
PkrI	GCNGC	9 cut(s)	169, 211, 214, 217, 220, 904, 907, 1168, 1213
PleI	GAGTC	4 cut(s)	12, 184, 960, 1135
PpsI	GAGTC	4 cut(s)	12, 184, 960, 1135
Ppu21I	YACGTR	1 cut(s)	584
PscI	ACATGT	1 cut(s)	547
PshBI	ATTAAT	1 cut(s)	951
Psp124BI	GAGCTC	1 cut(s)	1408
Psp6I	CCWGG	1 cut(s)	1037
PspGI	CCWGG	1 cut(s)	1037
PspN4I	GGNNCC	5 cut(s)	314, 315, 706, 960, 1332
PspOMI	GGGCCC	1 cut(s)	313
PspPI	GGNCC	4 cut(s)	55, 275, 313, 314
PsuI	RGATCY	2 cut(s)	346, 370
PteI	GCGCGC	1 cut(s)	62
PvuII	CAGCTG	1 cut(s)	1211
RsaI	GTAC	6 cut(s)	480, 578, 594, 691, 802, 1202
RsaNI	GTAC	6 cut(s)	479, 577, 593, 690, 801, 1201
RseI	CAYNNNNRTG	2 cut(s)	1111, 1202
SacI	GAGCTC	1 cut(s)	1408
SapI	GCTCTTC	1 cut(s)	101
SaqAI	TTAA	1 cut(s)	951
SatI	GCNGC	9 cut(s)	168, 210, 213, 216, 219, 903, 906, 1167, 1212
Sau3AI	GATC	3 cut(s)	346, 370, 540
Sau96I	GGNCC	4 cut(s)	55, 275, 313, 314
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	4 cut(s)	13, 185, 960, 1135
ScrFI	CCNGG	1 cut(s)	1039
SduI	GDGCHC	6 cut(s)	294, 317, 1159, 1180, 1389, 1408
SfcI	CTRYAG	1 cut(s)	465
SfuI	TTCGAA	1 cut(s)	104
SgrAI	CRCCGGYG	1 cut(s)	49
SinI	GGWCC	1 cut(s)	275
SmiMI	CAYNNNNRTG	2 cut(s)	1111, 1202
SmlI	CTYRAG	1 cut(s)	1010
SmoI	CTYRAG	1 cut(s)	1010
Sse9I	AATT	6 cut(s)	557, 624, 796, 927, 948, 1045
SsiI	CCGC	1 cut(s)	429
SspMI	CTAG	5 cut(s)	323, 612, 825, 1184, 1401
SstI	GAGCTC	1 cut(s)	1408
StyD4I	CCNGG	1 cut(s)	1037
StyI	CCWWGG	3 cut(s)	611, 831, 1409
TaaI	ACNGT	6 cut(s)	514, 697, 1070, 1082, 1161, 1391
TaiI	ACGT	3 cut(s)	71, 578, 586
TaqI	TCGA	3 cut(s)	104, 1056, 1153
TasI	AATT	6 cut(s)	557, 624, 796, 927, 948, 1045
TatI	WGTACW	4 cut(s)	478, 592, 800, 1200
TfiI	GAWTC	3 cut(s)	980, 1150, 1193
Tru1I	TTAA	1 cut(s)	951
Tru9I	TTAA	1 cut(s)	951
TscAI	CASTG	1 cut(s)	81
TseI	GCWGC	9 cut(s)	167, 209, 212, 215, 218, 902, 905, 1166, 1211
TspDTI	ATGAA	4 cut(s)	461, 636, 672, 842
TspRI	CASTG	1 cut(s)	81
VneI	GTGCAC	1 cut(s)	1176
VpaK11BI	GGWCC	1 cut(s)	275
VspI	ATTAAT	1 cut(s)	951
XapI	RAATTY	1 cut(s)	1045
XbaI	TCTAGA	1 cut(s)	322
XceI	RCATGY	6 cut(s)	122, 174, 551, 593, 943, 1207
XmaJI	CCTAGG	1 cut(s)	611
XmiI	GTMKAC	1 cut(s)	552
XmnI	GAANNNNTTC	1 cut(s)	533
XspI	CTAG	5 cut(s)	323, 612, 825, 1184, 1401
ZrmI	AGTACT	1 cut(s)	480
Zsp2I	ATGCAT	1 cut(s)	1108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.