Prupe.4G024200_v2.0.a1

RNA pseudouridine synthase 6

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Forward (+)
1143577 .. 1147611
4035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G024200.1

Sequence Viewer

Length: 1434 bp
ATGGGGTCTGTGAGCTTTACCTCAATGTTGGCCAATGGTTGCCGGAGTTTCAGTGCGCCAGTGGCACTTGTGCGCACGTTAGCACTCACCCATGTTGCTCTCAGTGAACACGCCAACAACTACAAGCATGTTAAGGTGGCTTGTTTTTCTCGGAGTTCAAAGAAACGAACTACGTTTGCATGCGAATCCTTGAAACAAGGCGTTACCCAACCAACTTCCGTTTCTTCTGTAAATGGCTACCCTGAATATACTCGCTTGCTTCCATGTCCCTCACACAATGGACCACCAAGAGTTGAGCACTTGGTTGTTTCAGAAGGGGGGCCTGTTCTAGAATATATCTGTAAAACTCTGGATCTTCCTCCTCAGTTTGTTGCAGATCTCATCCATTTTGGAGCTGTGTATTATGCCCTTGTATGTCCAAAGCCTCCTCCAACCGCAACCCCAGAGCAAATGAGGGTATTTAAAGAAGTCACAGCACCATCAGTACTAAAGAATAGAGCTTCGATCAAAGGAAAAACTGTAAGAGAAGCGCAGAAAACTTTCCGGATAACACATGCAGACGAATTTGTTGAAGCTGGAACATACTTACGTGTGCATGTACACCCAAAACGTTTTCCTAGGTGCTATGACATTGACTGGAAATCAAGAATTATAGCTGTATCTGAAGAATTTGTGGTTTTGGACAAACCTGCTGGTACAACAGTAGGAGGAACTACAGACAACATCGAAGAAAGTTGTGCAACCTTTGCTACTCGTGCCTTGGGACTTACAACCCCCCTGAATACTACACATCAGATTGATAATTGTACAGAAGGATGTGTTGTCTTAGCTAGAACCAAGGAGTATTGCTCAGTTTTTCATGGAAAAATCAGAGAGAAAAAAGTGAAGAAGCTTTACCTTGCTCTTGCTGCTGCTCCTGTACCAACTGGAATAATTACTCACTACATGCGTCCAATTAATGTGGCTCCTAGACTCATTTCAGAAGATTTCATTGAAAGGTGGAGTTTGTGTCAACTTGAGGTCATGGAATGCAAGGAGATTCCCTGGCCAAATGCCGTCGTTGAAGAGAAATATTGTGTTGAAGACTGTGGGTGGCCTTCAAAGGATTATGCATATGAATGTAAAATCAACCTTTTGACTGGGCGGACTCATCAGGTTCGAGCGCAACTGGCAGCCTGCGGTGCACCTATAGTAGGTGATTCCATGTACATGCCAGCTGCAGTTGCAGAGATGGAAAGTCCTGGACTGAACCCGTTTGGCCAATATAAGAAGCATTATACTACTGAAAATGATAAAGAAACAGCCGTCGCAGAGTGGATTGCACGGCATGGAAAGGAACCTAATGTTGCTATTGGTCTTCAAGCATGTCAGATATCATGGGATGATGGGAAGCACACTTTTGAGGCTAGAGCTCCTTGGTGGAGGTGTCAATAA

Protein Analysis

478

Amino Acids

53.05

Weight (kDa)

8.41

Isoelectric Point (pI)

45.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0011077)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 74
Acc36I ACCTGC 1 cut(s) 697
AccIII TCCGGA 1 cut(s) 543
AciI CCGC 3 cut(s) 435, 1144, 1179
AclI AACGTT 1 cut(s) 610
AclWI GGATC 1 cut(s) 360
AcoI YGGCCR 3 cut(s) 30, 1046, 1258
AcsI RAATTY 2 cut(s) 563, 668
AcuI CTGAAG 1 cut(s) 684
AfaI GTAC 6 cut(s) 486, 600, 697, 808, 921, 1208
AfiI CCNNNNNNNGG 1 cut(s) 1193
AflIII ACRYGT 1 cut(s) 589
AgsI TTSAA 8 cut(s) 159, 193, 572, 995, 1064, 1082, 1101, 1361
AjnI CCWGG 2 cut(s) 1043, 1240
AjuI GAANNNNNNNTTGG 2 cut(s) 205, 237
AluBI AGCT 9 cut(s) 15, 395, 500, 575, 656, 830, 892, 1217, 1412
AluI AGCT 9 cut(s) 15, 395, 500, 575, 656, 830, 892, 1217, 1412
Alw21I GWGCWC 3 cut(s) 300, 1186, 1414
Alw44I GTGCAC 1 cut(s) 1182
AlwI GGATC 1 cut(s) 360
Aor13HI TCCGGA 1 cut(s) 543
AoxI GGCC 5 cut(s) 30, 320, 1046, 1094, 1258
ApaLI GTGCAC 1 cut(s) 1182
ApeKI GCWGC 4 cut(s) 908, 911, 1172, 1217
ApoI RAATTY 2 cut(s) 563, 668
AseI ATTAAT 1 cut(s) 957
Asp700I GAANNNNTTC 1 cut(s) 539
AspA2I CCTAGG 1 cut(s) 617
AspLEI GCGC 4 cut(s) 58, 75, 532, 1165
AspS9I GGNCC 2 cut(s) 281, 320
AsuHPI GGTGA 2 cut(s) 79, 1208
AvaII GGWCC 1 cut(s) 281
AvrII CCTAGG 1 cut(s) 617
BaeGI GKGCMC 1 cut(s) 1186
BaeI ACNNNNGTAYC 2 cut(s) 687, 720
BalI TGGCCA 3 cut(s) 32, 1048, 1260
BanII GRGCYC 1 cut(s) 1414
BarI GAAGNNNNNNTAC 2 cut(s) 878, 910
BauI CACGAG 1 cut(s) 753
BbsI GAAGAC 2 cut(s) 1089, 1349
Bbv12I GWGCWC 3 cut(s) 300, 1186, 1414
BbvI GCAGC 4 cut(s) 895, 898, 1184, 1204
BccI CCATC 3 cut(s) 487, 1225, 1379
BceAI ACGGC 3 cut(s) 1040, 1289, 1340
BciT130I CCWGG 2 cut(s) 1045, 1242
BfaI CTAG 5 cut(s) 329, 618, 831, 969, 1407
BfmI CTRYAG 3 cut(s) 714, 1188, 1218
BfuAI ACCTGC 1 cut(s) 697
BglII AGATCT 1 cut(s) 376
BisI GCNGC 4 cut(s) 909, 912, 1173, 1218
BlnI CCTAGG 1 cut(s) 617
BlsI GCNGC 4 cut(s) 910, 913, 1174, 1219
BmcAI AGTACT 1 cut(s) 486
Bme1390I CCNGG 2 cut(s) 1045, 1242
Bme18I GGWCC 1 cut(s) 281
BmgT120I GGNCC 2 cut(s) 281, 320
BmiI GGNNCC 3 cut(s) 321, 966, 1338
BmrFI CCNGG 2 cut(s) 1045, 1242
BmrI ACTGGG 1 cut(s) 1149
BmuI ACTGGG 1 cut(s) 1149
BpiI GAAGAC 2 cut(s) 1089, 1349
BplI GAGNNNNNCTC 2 cut(s) 833, 865
BpuEI CTTGAG 1 cut(s) 1037
BsaAI YACGTR 1 cut(s) 590
BsaJI CCNNGG 5 cut(s) 617, 759, 837, 1043, 1415
BsaWI WCCGGW 1 cut(s) 543
BsaXI ACNNNNNCTCC 4 cut(s) 37, 67, 994, 1024
Bsc4I CCNNNNNNNGG 1 cut(s) 1193
Bse1I ACTGG 5 cut(s) 59, 641, 931, 1144, 1173
BseAI TCCGGA 1 cut(s) 543
BseBI CCWGG 2 cut(s) 1045, 1242
BseDI CCNNGG 5 cut(s) 617, 759, 837, 1043, 1415
BseGI GGATG 3 cut(s) 381, 821, 1387
BseLI CCNNNNNNNGG 1 cut(s) 1193
BseMII CTCAG 3 cut(s) 115, 377, 864
BseNI ACTGG 5 cut(s) 59, 641, 931, 1144, 1173
BseRI GAGGAG 2 cut(s) 351, 417
BseSI GKGCMC 1 cut(s) 1186
BseXI GCAGC 4 cut(s) 895, 898, 1184, 1204
BshFI GGCC 5 cut(s) 32, 322, 1048, 1096, 1260
BsiHKAI GWGCWC 3 cut(s) 300, 1186, 1414
BsiSI CCGG 2 cut(s) 43, 544
BslFI GGGAC 2 cut(s) 252, 777
BslI CCNNNNNNNGG 1 cut(s) 1193
BsmFI GGGAC 2 cut(s) 252, 777
BsmI GAATGC 1 cut(s) 1034
BsnI GGCC 5 cut(s) 32, 322, 1048, 1096, 1260
Bsp1286I GDGCHC 3 cut(s) 300, 1186, 1414
Bsp13I TCCGGA 1 cut(s) 543
Bsp1407I TGTACA 3 cut(s) 598, 806, 1206
Bsp143I GATC 3 cut(s) 352, 376, 504
BspACI CCGC 3 cut(s) 435, 1144, 1179
BspANI GGCC 5 cut(s) 32, 322, 1048, 1096, 1260
BspCNI CTCAG 3 cut(s) 114, 376, 863
BspEI TCCGGA 1 cut(s) 543
BspLI GGNNCC 3 cut(s) 321, 966, 1338
BspMAI CTGCAG 1 cut(s) 1222
BspMI ACCTGC 1 cut(s) 697
BspPI GGATC 1 cut(s) 360
BsrGI TGTACA 3 cut(s) 598, 806, 1206
BsrI ACTGG 5 cut(s) 59, 641, 931, 1144, 1173
BssECI CCNNGG 5 cut(s) 617, 759, 837, 1043, 1415
BssMI GATC 3 cut(s) 352, 376, 504
BssSI CACGAG 1 cut(s) 753
BssT1I CCWWGG 4 cut(s) 617, 759, 837, 1415
Bst2BI CACGAG 1 cut(s) 753
Bst2UI CCWGG 2 cut(s) 1045, 1242
Bst4CI ACNGT 3 cut(s) 520, 703, 1088
Bst6I CTCTTC 1 cut(s) 1059
BstAPI GCANNNNNTGC 1 cut(s) 746
BstAUI TGTACA 3 cut(s) 598, 806, 1206
BstBAI YACGTR 1 cut(s) 590
BstC8I GCNNGC 4 cut(s) 181, 257, 1177, 1215
BstDEI CTNAG 4 cut(s) 101, 363, 826, 850
BstENI CCTNNNNNAGG 1 cut(s) 1191
BstF5I GGATG 3 cut(s) 381, 821, 1387
BstHHI GCGC 4 cut(s) 58, 75, 532, 1165
BstKTI GATC 3 cut(s) 355, 379, 507
BstMBI GATC 3 cut(s) 352, 376, 504
BstMWI GCNNNNNNNGC 7 cut(s) 62, 746, 755, 908, 1169, 1181, 1223
BstNI CCWGG 2 cut(s) 1045, 1242
BstNSI RCATGY 7 cut(s) 131, 183, 557, 599, 949, 1213, 1368
BstSCI CCNGG 2 cut(s) 1043, 1240
BstSFI CTRYAG 3 cut(s) 714, 1188, 1218
BstSLI GKGCMC 1 cut(s) 1186
BstV1I GCAGC 4 cut(s) 895, 898, 1184, 1204
BstV2I GAAGAC 2 cut(s) 1089, 1349
BstX2I RGATCY 2 cut(s) 352, 376
BstYI RGATCY 2 cut(s) 352, 376
BsuRI GGCC 5 cut(s) 32, 322, 1048, 1096, 1260
BtsCI GGATG 3 cut(s) 381, 821, 1387
BtsIMutI CAGTG 3 cut(s) 58, 66, 109
BveI ACCTGC 1 cut(s) 697
Cac8I GCNNGC 4 cut(s) 181, 257, 1177, 1215
CfoI GCGC 4 cut(s) 58, 75, 532, 1165
Cfr13I GGNCC 2 cut(s) 281, 320
CseI GACGC 1 cut(s) 938
Csp6I GTAC 6 cut(s) 485, 599, 696, 807, 920, 1207
CspCI CAANNNNNGTGG 2 cut(s) 942, 977
CviQI GTAC 6 cut(s) 485, 599, 696, 807, 920, 1207
DdeI CTNAG 4 cut(s) 101, 363, 826, 850
DpnI GATC 3 cut(s) 354, 378, 506
DpnII GATC 3 cut(s) 352, 376, 504
DraI TTTAAA 1 cut(s) 463
EaeI YGGCCR 3 cut(s) 30, 1046, 1258
Eam1104I CTCTTC 1 cut(s) 1059
EarI CTCTTC 1 cut(s) 1059
EciI GGCGGA 1 cut(s) 1159
Ecl136II GAGCTC 1 cut(s) 1412
Eco130I CCWWGG 4 cut(s) 617, 759, 837, 1415
Eco24I GRGCYC 1 cut(s) 1414
Eco32I GATATC 1 cut(s) 1374
Eco47I GGWCC 1 cut(s) 281
Eco53kI GAGCTC 1 cut(s) 1412
Eco57I CTGAAG 1 cut(s) 684
EcoICRI GAGCTC 1 cut(s) 1412
EcoNI CCTNNNNNAGG 1 cut(s) 1191
EcoO109I RGGNCCY 1 cut(s) 320
EcoRII CCWGG 2 cut(s) 1043, 1240
EcoRV GATATC 1 cut(s) 1374
EcoT14I CCWWGG 4 cut(s) 617, 759, 837, 1415
EcoT22I ATGCAT 1 cut(s) 1114
EcoT38I GRGCYC 1 cut(s) 1414
ErhI CCWWGG 4 cut(s) 617, 759, 837, 1415
FaqI GGGAC 2 cut(s) 252, 777
FauNDI CATATG 1 cut(s) 1114
Fnu4HI GCNGC 4 cut(s) 909, 912, 1173, 1218
FokI GGATG 3 cut(s) 368, 828, 1394
FriOI GRGCYC 1 cut(s) 1414
Fsp4HI GCNGC 4 cut(s) 909, 912, 1173, 1218
FspAI RTGCGCAY 1 cut(s) 74
FspBI CTAG 5 cut(s) 329, 618, 831, 969, 1407
FspI TGCGCA 1 cut(s) 74
GlaI GCGC 4 cut(s) 57, 74, 531, 1164
GluI GCNGC 4 cut(s) 909, 912, 1173, 1218
HaeIII GGCC 5 cut(s) 32, 322, 1048, 1096, 1260
HapII CCGG 2 cut(s) 43, 544
HgaI GACGC 1 cut(s) 938
HhaI GCGC 4 cut(s) 58, 75, 532, 1165
Hin6I GCGC 4 cut(s) 56, 73, 530, 1163
HinP1I GCGC 4 cut(s) 56, 73, 530, 1163
HincII GTYRAC 1 cut(s) 1013
HindII GTYRAC 1 cut(s) 1013
HindIII AAGCTT 1 cut(s) 890
HinfI GANTC 5 cut(s) 185, 972, 1039, 1147, 1199
HpaII CCGG 2 cut(s) 43, 544
HphI GGTGA 2 cut(s) 79, 1208
Hpy166II GTNNAC 4 cut(s) 107, 601, 1013, 1184
Hpy188I TCNGA 7 cut(s) 153, 313, 664, 795, 872, 982, 1371
Hpy188III TCNNGA 4 cut(s) 329, 350, 544, 645
Hpy8I GTNNAC 4 cut(s) 107, 601, 1013, 1184
Hpy99I CGWCG 2 cut(s) 1061, 1310
HpyAV CCTTC 3 cut(s) 308, 806, 1107
HpyCH4III ACNGT 3 cut(s) 520, 703, 1088
HpyCH4IV ACGT 4 cut(s) 77, 173, 589, 610
HpyF10VI GCNNNNNNNGC 7 cut(s) 62, 746, 755, 908, 1169, 1181, 1223
HpyF3I CTNAG 4 cut(s) 101, 363, 826, 850
HpySE526I ACGT 4 cut(s) 77, 173, 589, 610
HspAI GCGC 4 cut(s) 56, 73, 530, 1163
Kpn2I TCCGGA 1 cut(s) 543
Kzo9I GATC 3 cut(s) 352, 376, 504
LmnI GCTCC 4 cut(s) 392, 919, 970, 1417
Lsp1109I GCAGC 4 cut(s) 895, 898, 1184, 1204
MaeI CTAG 5 cut(s) 329, 618, 831, 969, 1407
MaeII ACGT 4 cut(s) 77, 173, 589, 610
MaeIII GTNAC 2 cut(s) 202, 469
MalI GATC 3 cut(s) 354, 378, 506
MboI GATC 3 cut(s) 352, 376, 504
MboII GAAGA 9 cut(s) 216, 347, 677, 740, 898, 995, 1076, 1094, 1349
MflI RGATCY 2 cut(s) 352, 376
MhlI GDGCHC 3 cut(s) 300, 1186, 1414
MlsI TGGCCA 3 cut(s) 32, 1048, 1260
MluCI AATT 6 cut(s) 563, 648, 668, 802, 933, 954
MluNI TGGCCA 3 cut(s) 32, 1048, 1260
MlyI GAGTC 2 cut(s) 966, 1141
MmeI TCCRAC 1 cut(s) 455
Mox20I TGGCCA 3 cut(s) 32, 1048, 1260
Mph1103I ATGCAT 1 cut(s) 1114
MroI TCCGGA 1 cut(s) 543
MroXI GAANNNNTTC 1 cut(s) 539
MscI TGGCCA 3 cut(s) 32, 1048, 1260
MseI TTAA 3 cut(s) 132, 462, 957
MslI CAYNNNNRTG 2 cut(s) 1117, 1208
Msp20I TGGCCA 3 cut(s) 32, 1048, 1260
MspA1I CMGCKG 1 cut(s) 1217
MspI CCGG 2 cut(s) 43, 544
MspR9I CCNGG 2 cut(s) 1045, 1242
Mva1269I GAATGC 1 cut(s) 1034
MvaI CCWGG 2 cut(s) 1045, 1242
MwoI GCNNNNNNNGC 7 cut(s) 62, 746, 755, 908, 1169, 1181, 1223
NdeI CATATG 1 cut(s) 1114
NdeII GATC 3 cut(s) 352, 376, 504
NlaIV GGNNCC 3 cut(s) 321, 966, 1338
NmuCI GTSAC 1 cut(s) 469
NsbI TGCGCA 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 1114
NspI RCATGY 7 cut(s) 131, 183, 557, 599, 949, 1213, 1368
PaeI GCATGC 1 cut(s) 183
PctI GAATGC 1 cut(s) 1034
PdmI GAANNNNTTC 1 cut(s) 539
PfeI GAWTC 3 cut(s) 185, 1039, 1199
PfoI TCCNGGA 1 cut(s) 1240
PkrI GCNGC 4 cut(s) 910, 913, 1174, 1219
PleI GAGTC 2 cut(s) 966, 1141
PpsI GAGTC 2 cut(s) 966, 1141
Ppu21I YACGTR 1 cut(s) 590
PshBI ATTAAT 1 cut(s) 957
Psp124BI GAGCTC 1 cut(s) 1414
Psp1406I AACGTT 1 cut(s) 610
Psp6I CCWGG 2 cut(s) 1043, 1240
PspGI CCWGG 2 cut(s) 1043, 1240
PspN4I GGNNCC 3 cut(s) 321, 966, 1338
PspPI GGNCC 2 cut(s) 281, 320
PstI CTGCAG 1 cut(s) 1222
PsuI RGATCY 2 cut(s) 352, 376
PvuII CAGCTG 1 cut(s) 1217
RsaI GTAC 6 cut(s) 486, 600, 697, 808, 921, 1208
RsaNI GTAC 6 cut(s) 485, 599, 696, 807, 920, 1207
RseI CAYNNNNRTG 2 cut(s) 1117, 1208
SacI GAGCTC 1 cut(s) 1414
SaqAI TTAA 3 cut(s) 132, 462, 957
SatI GCNGC 4 cut(s) 909, 912, 1173, 1218
Sau3AI GATC 3 cut(s) 352, 376, 504
Sau96I GGNCC 2 cut(s) 281, 320
ScaI AGTACT 1 cut(s) 486
SchI GAGTC 2 cut(s) 966, 1141
ScrFI CCNGG 2 cut(s) 1045, 1242
SduI GDGCHC 3 cut(s) 300, 1186, 1414
SfcI CTRYAG 3 cut(s) 714, 1188, 1218
SinI GGWCC 1 cut(s) 281
SmiMI CAYNNNNRTG 2 cut(s) 1117, 1208
SmlI CTYRAG 1 cut(s) 1016
SmoI CTYRAG 1 cut(s) 1016
SphI GCATGC 1 cut(s) 183
Sse9I AATT 6 cut(s) 563, 648, 668, 802, 933, 954
SsiI CCGC 3 cut(s) 435, 1144, 1179
SspI AATATT 1 cut(s) 1073
SspMI CTAG 5 cut(s) 329, 618, 831, 969, 1407
SstI GAGCTC 1 cut(s) 1414
StyD4I CCNGG 2 cut(s) 1043, 1240
StyI CCWWGG 4 cut(s) 617, 759, 837, 1415
TaaI ACNGT 3 cut(s) 520, 703, 1088
TaiI ACGT 4 cut(s) 80, 176, 592, 613
TaqI TCGA 3 cut(s) 503, 726, 1159
TasI AATT 6 cut(s) 563, 648, 668, 802, 933, 954
TatI WGTACW 4 cut(s) 484, 598, 806, 1206
TfiI GAWTC 3 cut(s) 185, 1039, 1199
Tru1I TTAA 3 cut(s) 132, 462, 957
Tru9I TTAA 3 cut(s) 132, 462, 957
TscAI CASTG 3 cut(s) 58, 66, 109
TseFI GTSAC 1 cut(s) 469
TseI GCWGC 4 cut(s) 908, 911, 1172, 1217
Tsp45I GTSAC 1 cut(s) 469
TspDTI ATGAA 3 cut(s) 848, 979, 1131
TspGWI ACGGA 1 cut(s) 208
TspRI CASTG 3 cut(s) 58, 66, 109
VneI GTGCAC 1 cut(s) 1182
VpaK11BI GGWCC 1 cut(s) 281
VspI ATTAAT 1 cut(s) 957
XagI CCTNNNNNAGG 1 cut(s) 1191
XapI RAATTY 2 cut(s) 563, 668
XbaI TCTAGA 1 cut(s) 328
XceI RCATGY 7 cut(s) 131, 183, 557, 599, 949, 1213, 1368
XmaJI CCTAGG 1 cut(s) 617
XmnI GAANNNNTTC 1 cut(s) 539
XspI CTAG 5 cut(s) 329, 618, 831, 969, 1407
ZrmI AGTACT 1 cut(s) 486
Zsp2I ATGCAT 1 cut(s) 1114
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.