MD10G1317600.v1.1

RNA pseudouridine synthase 6

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Reverse (-)
40069384 .. 40072212
2829 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1317600.v1.1.491

Sequence Viewer

Length: 1224 bp
ATGTTACATATCTTCTTTCAGCTATCCTACCCTGAATATACTCGGTTGCTTCCATGTCCCTCAGACAATGGACCGCCAAGAATCGAGCACTTGGTTGTTTCAGAAGGGGGGCCTGTACTAGAATATATCTGCAAAGTTCTGGATCTTCCTCTTCAGTTTGTTGCAGATCTCATCCATTTTGGAGCTGTATATTATGCCCTTGTCTGTCCACGGCCTCCTCCAACTGCAACCCCAGAGCAGATGAGGGTATTTAAAGAAGTTACAGCACCATCAGTACTAAAAGATAGAGCTTCCATCAAAGGAAAAACTATAAGAGAAGCACAGAAGACTTTCCGCATAACACATCCAGACCAATTTGTTGAAACTGGAACCTACTTACGTGTTCATGTACACCCAAAGCGTTTTCCTAGGTGCTATGAAATTGACTGGAAATCAAGAATTGTAGCTGTAACTGATGATTTCGTGGTTTTGGACAAACCTGCTGGTACAACAGTAGGAGGAACTACAGACAACATCGAAGAAAGTTGTGCAACCTTTGCCACTCGTGCCTTGGGACTAACAACACCCCTGATGACTACACATCAGATAGATAATTGTACAGAAGGGTGTGTTGTCTTAGCTAGAACCAAGGAGTATTGCTCAGTTTTTCACGGAAAAATCAGAGAGAAAAAGGTGAAGAAGCATTATCTTGCTCTTGCCGCTGCCCCTGTGCCAATTGGAACAATTACTCACTACATGCGTCCAATTAACATGGCTCCAAGACTCATTTCAGAAGATTTCATGGAACGGTGGAGTTTGTGTCAACTTGAAGTCATGGAACGCAAGGAGGTTCCCTGGCCAAGTTCTGTTGTTGAACAGAAATATTGTGTTGAAGACTGTGGGTGGCCTTCAAAAGAATATGCATATGAGTGTAAAATCAACCTTCTGACTGGGCGGACTCATCAGGTTCGAGCACAACTGGCAGCGCTTCGTGCACCAATAGTTGGCGATTCCATGTACATGCCAGCTGCAGTTGCAGAAATGGCAAGTCCTGGGCGGAACCCGTTTGGCAAATATAAGAAGCATTATACTCATGTAACTGATAAAGAAGTTGCGATCGAAGAGTGGAGTGCACAGCATGGGAAGGAACCTGGTGTTGCTATTGGTCTTCAAGCATGTCAGATATCATGGGATGATGGGAAGTACACTTTTGAGGCTGGAGCTCCTTGGTGGAGGTGCCAATAA

Protein Analysis

408

Amino Acids

45.99

Weight (kDa)

7.88

Isoelectric Point (pI)

43.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PseudoU_synth_2 PF00849 153 - 322 3.1e-27 RNA pseudouridylate synthase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0011077)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 487
AccB1I GGYRCC 1 cut(s) 1215
AccB7I CCANNNNNTGG 1 cut(s) 983
AciI CCGC 5 cut(s) 74, 334, 699, 934, 1036
AclWI GGATC 1 cut(s) 150
AcoI YGGCCR 1 cut(s) 836
AcuI CTGAAG 1 cut(s) 137
AfaI GTAC 7 cut(s) 117, 276, 390, 487, 598, 998, 1184
AfeI AGCGCT 1 cut(s) 966
AfiI CCNNNNNNNGG 1 cut(s) 983
AflIII ACRYGT 1 cut(s) 379
AgsI TTSAA 6 cut(s) 362, 809, 854, 872, 891, 1151
AjnI CCWGG 3 cut(s) 833, 1030, 1129
AjuI GAANNNNNNNTTGG 2 cut(s) 751, 783
AluBI AGCT 7 cut(s) 22, 185, 290, 446, 620, 1007, 1202
AluI AGCT 7 cut(s) 22, 185, 290, 446, 620, 1007, 1202
Alw21I GWGCWC 5 cut(s) 90, 955, 976, 1114, 1204
Alw44I GTGCAC 2 cut(s) 972, 1110
AlwI GGATC 1 cut(s) 150
Aor51HI AGCGCT 1 cut(s) 966
AoxI GGCC 4 cut(s) 110, 212, 836, 884
ApaLI GTGCAC 2 cut(s) 972, 1110
ApeKI GCWGC 3 cut(s) 701, 962, 1007
Asp700I GAANNNNTTC 1 cut(s) 329
AspA2I CCTAGG 1 cut(s) 407
AspLEI GCGC 1 cut(s) 967
AspS9I GGNCC 2 cut(s) 71, 110
AsuHPI GGTGA 1 cut(s) 685
AvaII GGWCC 1 cut(s) 71
AvrII CCTAGG 1 cut(s) 407
BaeGI GKGCMC 2 cut(s) 976, 1114
BaeI ACNNNNGTAYC 2 cut(s) 477, 510
BalI TGGCCA 1 cut(s) 838
BanI GGYRCC 1 cut(s) 1215
BanII GRGCYC 1 cut(s) 1204
BauI CACGAG 1 cut(s) 543
BbsI GAAGAC 3 cut(s) 332, 879, 1139
Bbv12I GWGCWC 5 cut(s) 90, 955, 976, 1114, 1204
BbvI GCAGC 3 cut(s) 688, 974, 994
BccI CCATC 3 cut(s) 277, 302, 1169
BceAI ACGGC 1 cut(s) 227
BciT130I CCWGG 3 cut(s) 835, 1032, 1131
BfaI CTAG 3 cut(s) 119, 408, 621
BfmI CTRYAG 2 cut(s) 504, 1008
BfoI RGCGCY 1 cut(s) 968
BfuAI ACCTGC 1 cut(s) 487
BglII AGATCT 1 cut(s) 166
BisI GCNGC 4 cut(s) 699, 702, 963, 1008
BlnI CCTAGG 1 cut(s) 407
BlsI GCNGC 4 cut(s) 700, 703, 964, 1009
BmcAI AGTACT 1 cut(s) 276
Bme1390I CCNGG 3 cut(s) 835, 1032, 1131
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 2 cut(s) 71, 110
BmiI GGNNCC 7 cut(s) 111, 370, 756, 831, 1040, 1128, 1217
BmrFI CCNGG 3 cut(s) 835, 1032, 1131
BmrI ACTGGG 1 cut(s) 939
BmuI ACTGGG 1 cut(s) 939
BpiI GAAGAC 3 cut(s) 332, 879, 1139
BplI GAGNNNNNCTC 2 cut(s) 623, 655
BpmI CTGGAG 1 cut(s) 1218
BsaAI YACGTR 1 cut(s) 380
BsaJI CCNNGG 7 cut(s) 209, 407, 549, 627, 833, 1031, 1205
BsaXI ACNNNNNCTCC 2 cut(s) 784, 814
Bsc4I CCNNNNNNNGG 1 cut(s) 983
Bse1I ACTGG 4 cut(s) 370, 431, 934, 963
BseBI CCWGG 3 cut(s) 835, 1032, 1131
BseDI CCNNGG 7 cut(s) 209, 407, 549, 627, 833, 1031, 1205
BseGI GGATG 3 cut(s) 171, 343, 1177
BseLI CCNNNNNNNGG 1 cut(s) 983
BseMII CTCAG 2 cut(s) 75, 654
BseNI ACTGG 4 cut(s) 370, 431, 934, 963
BseRI GAGGAG 1 cut(s) 207
BseSI GKGCMC 2 cut(s) 976, 1114
BseXI GCAGC 3 cut(s) 688, 974, 994
Bsh1285I CGRYCG 1 cut(s) 1098
BshFI GGCC 4 cut(s) 112, 214, 838, 886
BshNI GGYRCC 1 cut(s) 1215
BsiEI CGRYCG 1 cut(s) 1098
BsiHKAI GWGCWC 5 cut(s) 90, 955, 976, 1114, 1204
BslFI GGGAC 2 cut(s) 42, 567
BslI CCNNNNNNNGG 1 cut(s) 983
BsmFI GGGAC 2 cut(s) 42, 567
BsnI GGCC 4 cut(s) 112, 214, 838, 886
Bsp1286I GDGCHC 5 cut(s) 90, 955, 976, 1114, 1204
Bsp1407I TGTACA 3 cut(s) 388, 596, 996
Bsp143I GATC 3 cut(s) 142, 166, 1095
BspACI CCGC 5 cut(s) 74, 334, 699, 934, 1036
BspANI GGCC 4 cut(s) 112, 214, 838, 886
BspCNI CTCAG 2 cut(s) 74, 653
BspLI GGNNCC 7 cut(s) 111, 370, 756, 831, 1040, 1128, 1217
BspMAI CTGCAG 1 cut(s) 1012
BspMI ACCTGC 1 cut(s) 487
BspPI GGATC 1 cut(s) 150
BspT107I GGYRCC 1 cut(s) 1215
BsrGI TGTACA 3 cut(s) 388, 596, 996
BsrI ACTGG 4 cut(s) 370, 431, 934, 963
BssECI CCNNGG 7 cut(s) 209, 407, 549, 627, 833, 1031, 1205
BssMI GATC 3 cut(s) 142, 166, 1095
BssSI CACGAG 1 cut(s) 543
BssT1I CCWWGG 4 cut(s) 407, 549, 627, 1205
Bst2BI CACGAG 1 cut(s) 543
Bst2UI CCWGG 3 cut(s) 835, 1032, 1131
Bst4CI ACNGT 3 cut(s) 493, 789, 878
Bst6I CTCTTC 2 cut(s) 156, 1095
BstAPI GCANNNNNTGC 1 cut(s) 536
BstAUI TGTACA 3 cut(s) 388, 596, 996
BstBAI YACGTR 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 1005
BstDEI CTNAG 3 cut(s) 61, 616, 640
BstDSI CCRYGG 1 cut(s) 209
BstF5I GGATG 3 cut(s) 171, 343, 1177
BstH2I RGCGCY 1 cut(s) 968
BstHHI GCGC 1 cut(s) 967
BstKTI GATC 3 cut(s) 145, 169, 1098
BstMBI GATC 3 cut(s) 142, 166, 1095
BstMCI CGRYCG 1 cut(s) 1098
BstMWI GCNNNNNNNGC 7 cut(s) 536, 545, 698, 959, 971, 1013, 1022
BstNI CCWGG 3 cut(s) 835, 1032, 1131
BstNSI RCATGY 3 cut(s) 739, 1003, 1158
BstSCI CCNGG 3 cut(s) 833, 1030, 1129
BstSFI CTRYAG 2 cut(s) 504, 1008
BstSLI GKGCMC 2 cut(s) 976, 1114
BstV1I GCAGC 3 cut(s) 688, 974, 994
BstV2I GAAGAC 3 cut(s) 332, 879, 1139
BstX2I RGATCY 2 cut(s) 142, 166
BstYI RGATCY 2 cut(s) 142, 166
BsuRI GGCC 4 cut(s) 112, 214, 838, 886
BtgI CCRYGG 1 cut(s) 209
BtsCI GGATG 3 cut(s) 171, 343, 1177
BveI ACCTGC 1 cut(s) 487
Cac8I GCNNGC 1 cut(s) 1005
CfoI GCGC 1 cut(s) 967
Cfr13I GGNCC 2 cut(s) 71, 110
CseI GACGC 1 cut(s) 728
CsiI ACCWGGT 1 cut(s) 1129
Csp6I GTAC 7 cut(s) 116, 275, 389, 486, 597, 997, 1183
CviQI GTAC 7 cut(s) 116, 275, 389, 486, 597, 997, 1183
DdeI CTNAG 3 cut(s) 61, 616, 640
DpnI GATC 3 cut(s) 144, 168, 1097
DpnII GATC 3 cut(s) 142, 166, 1095
DraI TTTAAA 1 cut(s) 253
EaeI YGGCCR 1 cut(s) 836
Eam1104I CTCTTC 2 cut(s) 156, 1095
EarI CTCTTC 2 cut(s) 156, 1095
EciI GGCGGA 2 cut(s) 949, 1051
Ecl136II GAGCTC 1 cut(s) 1202
Eco130I CCWWGG 4 cut(s) 407, 549, 627, 1205
Eco24I GRGCYC 1 cut(s) 1204
Eco32I GATATC 1 cut(s) 1164
Eco47I GGWCC 1 cut(s) 71
Eco47III AGCGCT 1 cut(s) 966
Eco53kI GAGCTC 1 cut(s) 1202
Eco57I CTGAAG 1 cut(s) 137
EcoICRI GAGCTC 1 cut(s) 1202
EcoO109I RGGNCCY 1 cut(s) 110
EcoRII CCWGG 3 cut(s) 833, 1030, 1129
EcoRV GATATC 1 cut(s) 1164
EcoT14I CCWWGG 4 cut(s) 407, 549, 627, 1205
EcoT22I ATGCAT 1 cut(s) 904
EcoT38I GRGCYC 1 cut(s) 1204
ErhI CCWWGG 4 cut(s) 407, 549, 627, 1205
FaqI GGGAC 2 cut(s) 42, 567
FauNDI CATATG 1 cut(s) 904
Fnu4HI GCNGC 4 cut(s) 699, 702, 963, 1008
FokI GGATG 3 cut(s) 158, 330, 1184
FriOI GRGCYC 1 cut(s) 1204
Fsp4HI GCNGC 4 cut(s) 699, 702, 963, 1008
FspBI CTAG 3 cut(s) 119, 408, 621
GlaI GCGC 1 cut(s) 966
GluI GCNGC 4 cut(s) 699, 702, 963, 1008
GsuI CTGGAG 1 cut(s) 1218
HaeII RGCGCY 1 cut(s) 968
HaeIII GGCC 4 cut(s) 112, 214, 838, 886
HgaI GACGC 1 cut(s) 728
HhaI GCGC 1 cut(s) 967
Hin6I GCGC 1 cut(s) 965
HinP1I GCGC 1 cut(s) 965
HincII GTYRAC 1 cut(s) 803
HindII GTYRAC 1 cut(s) 803
HinfI GANTC 4 cut(s) 81, 762, 937, 989
HphI GGTGA 1 cut(s) 685
Hpy166II GTNNAC 6 cut(s) 209, 391, 803, 974, 1112, 1185
Hpy188I TCNGA 7 cut(s) 64, 103, 585, 662, 772, 927, 1161
Hpy188III TCNNGA 3 cut(s) 140, 347, 435
Hpy8I GTNNAC 6 cut(s) 209, 391, 803, 974, 1112, 1185
HpyAV CCTTC 5 cut(s) 98, 596, 897, 932, 1117
HpyCH4III ACNGT 3 cut(s) 493, 789, 878
HpyCH4IV ACGT 1 cut(s) 379
HpyCH4V TGCA 9 cut(s) 132, 164, 227, 530, 902, 974, 1010, 1016, 1112
HpyF10VI GCNNNNNNNGC 7 cut(s) 536, 545, 698, 959, 971, 1013, 1022
HpyF3I CTNAG 3 cut(s) 61, 616, 640
HpySE526I ACGT 1 cut(s) 379
HspAI GCGC 1 cut(s) 965
Kzo9I GATC 3 cut(s) 142, 166, 1095
LmnI GCTCC 4 cut(s) 182, 760, 1199, 1207
Lsp1109I GCAGC 3 cut(s) 688, 974, 994
MabI ACCWGGT 1 cut(s) 1129
MaeI CTAG 3 cut(s) 119, 408, 621
MaeII ACGT 1 cut(s) 379
MaeIII GTNAC 4 cut(s) 3, 259, 448, 1075
MalI GATC 3 cut(s) 144, 168, 1097
MboI GATC 3 cut(s) 142, 166, 1095
MfeI CAATTG 1 cut(s) 714
MflI RGATCY 2 cut(s) 142, 166
MhlI GDGCHC 5 cut(s) 90, 955, 976, 1114, 1204
MlsI TGGCCA 1 cut(s) 838
MluCI AATT 7 cut(s) 353, 420, 438, 592, 714, 723, 744
MluNI TGGCCA 1 cut(s) 838
MlyI GAGTC 2 cut(s) 756, 931
MmeI TCCRAC 1 cut(s) 245
MnlI CCTC 9 cut(s) 70, 159, 225, 228, 237, 491, 820, 1186, 1206
Mox20I TGGCCA 1 cut(s) 838
Mph1103I ATGCAT 1 cut(s) 904
MroXI GAANNNNTTC 1 cut(s) 329
MscI TGGCCA 1 cut(s) 838
MseI TTAA 2 cut(s) 252, 747
MslI CAYNNNNRTG 2 cut(s) 907, 998
Msp20I TGGCCA 1 cut(s) 838
MspA1I CMGCKG 2 cut(s) 701, 1007
MspR9I CCNGG 3 cut(s) 835, 1032, 1131
MunI CAATTG 1 cut(s) 714
MvaI CCWGG 3 cut(s) 835, 1032, 1131
MwoI GCNNNNNNNGC 7 cut(s) 536, 545, 698, 959, 971, 1013, 1022
NdeI CATATG 1 cut(s) 904
NdeII GATC 3 cut(s) 142, 166, 1095
NlaIV GGNNCC 7 cut(s) 111, 370, 756, 831, 1040, 1128, 1217
NsiI ATGCAT 1 cut(s) 904
NspI RCATGY 3 cut(s) 739, 1003, 1158
PdmI GAANNNNTTC 1 cut(s) 329
PfeI GAWTC 2 cut(s) 81, 989
PflMI CCANNNNNTGG 1 cut(s) 983
PkrI GCNGC 4 cut(s) 700, 703, 964, 1009
Ple19I CGATCG 1 cut(s) 1098
PleI GAGTC 2 cut(s) 756, 931
PpsI GAGTC 2 cut(s) 756, 931
Ppu21I YACGTR 1 cut(s) 380
Psp124BI GAGCTC 1 cut(s) 1204
Psp6I CCWGG 3 cut(s) 833, 1030, 1129
PspGI CCWGG 3 cut(s) 833, 1030, 1129
PspN4I GGNNCC 7 cut(s) 111, 370, 756, 831, 1040, 1128, 1217
PspPI GGNCC 2 cut(s) 71, 110
PstI CTGCAG 1 cut(s) 1012
PsuI RGATCY 2 cut(s) 142, 166
PvuI CGATCG 1 cut(s) 1098
PvuII CAGCTG 1 cut(s) 1007
RsaI GTAC 7 cut(s) 117, 276, 390, 487, 598, 998, 1184
RsaNI GTAC 7 cut(s) 116, 275, 389, 486, 597, 997, 1183
RseI CAYNNNNRTG 2 cut(s) 907, 998
SacI GAGCTC 1 cut(s) 1204
SaqAI TTAA 2 cut(s) 252, 747
SatI GCNGC 4 cut(s) 699, 702, 963, 1008
Sau3AI GATC 3 cut(s) 142, 166, 1095
Sau96I GGNCC 2 cut(s) 71, 110
ScaI AGTACT 1 cut(s) 276
SchI GAGTC 2 cut(s) 756, 931
ScrFI CCNGG 3 cut(s) 835, 1032, 1131
SduI GDGCHC 5 cut(s) 90, 955, 976, 1114, 1204
SexAI ACCWGGT 1 cut(s) 1129
SfcI CTRYAG 2 cut(s) 504, 1008
SinI GGWCC 1 cut(s) 71
SmiMI CAYNNNNRTG 2 cut(s) 907, 998
Sse9I AATT 7 cut(s) 353, 420, 438, 592, 714, 723, 744
SsiI CCGC 5 cut(s) 74, 334, 699, 934, 1036
SspI AATATT 1 cut(s) 863
SspMI CTAG 3 cut(s) 119, 408, 621
SstI GAGCTC 1 cut(s) 1204
StyD4I CCNGG 3 cut(s) 833, 1030, 1129
StyI CCWWGG 4 cut(s) 407, 549, 627, 1205
TaaI ACNGT 3 cut(s) 493, 789, 878
TaiI ACGT 1 cut(s) 382
TaqI TCGA 4 cut(s) 84, 516, 949, 1098
TasI AATT 7 cut(s) 353, 420, 438, 592, 714, 723, 744
TatI WGTACW 6 cut(s) 115, 274, 388, 596, 996, 1182
TauI GCSGC 1 cut(s) 701
TfiI GAWTC 2 cut(s) 81, 989
Tru1I TTAA 2 cut(s) 252, 747
Tru9I TTAA 2 cut(s) 252, 747
TseI GCWGC 3 cut(s) 701, 962, 1007
TspDTI ATGAA 3 cut(s) 374, 432, 769
TspGWI ACGGA 1 cut(s) 666
Van91I CCANNNNNTGG 1 cut(s) 983
VneI GTGCAC 2 cut(s) 972, 1110
VpaK11BI GGWCC 1 cut(s) 71
XceI RCATGY 3 cut(s) 739, 1003, 1158
XcmI CCANNNNNNNNNTGG 1 cut(s) 547
XmaJI CCTAGG 1 cut(s) 407
XmnI GAANNNNTTC 1 cut(s) 329
XspI CTAG 3 cut(s) 119, 408, 621
ZrmI AGTACT 1 cut(s) 276
Zsp2I ATGCAT 1 cut(s) 904
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.