AT4G21790

tobamovirus multiplication

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0012412
Physical Location & Seq
Forward (+)
11569524 .. 11572595
3072 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G21790.1

Sequence Viewer

Length: 876 bp
ATGACGGATTCGGGTCTAATGATGCCGGCGGAGATTGCTGGAATTCTAACCACGGCGATTACGAGTTGGTGGGATGATGTTAATGAGTCAACTCAGTGGCAAGATGGGATCTTTTTCGCTCTTTGTGGTGCTTATGCTCTTGTTTCCGCCGTTGCTCTTGTTCAACTGATAAGGATCCAAATGAGAGTGCCTGAGTATGGTTGGACTACTCAGAAGGTGTTTCATCTTATGAACTTTGTCGTCAATGGAGTTCGTGCGGTTCTGTTTGGATTTCACATGCAAGTATTTCTTGTTCATCCCAAGGCTCTTTGCTGGGTACTATTGGATCTTCCTGGCCTTCTCTTTTTCTCGGCATACACGCTGCTTGTGCTGTTCTGGGCAGAGATATATCACCAGGCTAGAAGCTTACCTACAGATAAGCTGCGGATAACCTATATTTCTGTCAACGTGGCTGTATATTTGGCTCAGATTGGTATCTGGGCATACATCTGGGTACATGATAACAGCACTGTGGAGTTAGTTGGAAAGATATTTATCGCAGTTGTGTCTTTCATCGCCGCATTAGGCTTCTTGCTGTATGGAGGAAGATTGTTTTTCATGCTAAGAAGGTTCCCTATCGAGTCAAAAGGAAGAAGGAAGAAACTCCACGAGGTTGGATCTGTGACAGCTATATGCTTCACCTGCTTCCTCATAAGATGCGTTGTGGTGGCTGTATCAGCTTTTGACAAGGATTTAACACTTGATGTTCTTGATCATCCGGTTCTGAACTTAATCTACTATATGGTGGTAGAAGTACTTCCATCGGCACTAGTCCTCTTCATTCTCCGAAAGCTACCTCCAAAGAGAGTATCAGCTCAATACCATCCGATCCAGTAG

Protein Analysis

291

Amino Acids

33.01

Weight (kDa)

8.77

Isoelectric Point (pI)

28.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THH1_TOM1-3_dom PF06454 20 - 291 9e-143 THH1/TOM1/TOM3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21790
fragaria_vesca FvH4_3g02360 FvH4_3g02360
malus_domestica MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica Prupe.4G023400_v2.0.a1
pyrus_communis pycom05g31290
rosa_chinensis RchiOBHm_Chr5g0003581
rosa_laevigata RLG00000031154
rosa_multiflora Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii Rroxscaffold_1G00072380
rosa_rugosa Rorug04G0404700 Rorug04G0404800
rosa_samantha Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana Rw5G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 689
Acc36I ACCTGC 1 cut(s) 689
AciI CCGC 5 cut(s) 29, 147, 257, 424, 558
AclWI GGATC 6 cut(s) 116, 169, 182, 333, 664, 862
AcsI RAATTY 1 cut(s) 42
AfaI GTAC 3 cut(s) 318, 495, 795
AfiI CCNNNNNNNGG 1 cut(s) 197
AgsI TTSAA 1 cut(s) 164
AhlI ACTAGT 1 cut(s) 808
AjnI CCWGG 2 cut(s) 331, 393
AluBI AGCT 6 cut(s) 405, 421, 668, 719, 832, 854
AluI AGCT 6 cut(s) 405, 421, 668, 719, 832, 854
AlwI GGATC 6 cut(s) 116, 169, 182, 333, 664, 862
AoxI GGCC 1 cut(s) 334
ApeKI GCWGC 2 cut(s) 361, 421
ApoI RAATTY 1 cut(s) 42
Asp700I GAANNNNTTC 1 cut(s) 795
AsuHPI GGTGA 2 cut(s) 383, 670
BamHI GGATCC 1 cut(s) 174
BarI GAAGNNNNNNTAC 4 cut(s) 394, 426, 780, 812
BauI CACGAG 1 cut(s) 647
BbvI GCAGC 2 cut(s) 348, 408
BccI CCATC 3 cut(s) 98, 808, 870
BceAI ACGGC 2 cut(s) 69, 134
BciT130I CCWGG 2 cut(s) 333, 395
BclI TGATCA 1 cut(s) 751
BcuI ACTAGT 1 cut(s) 808
BfaI CTAG 2 cut(s) 399, 809
BfmI CTRYAG 1 cut(s) 411
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 3 cut(s) 362, 422, 558
BlsI GCNGC 3 cut(s) 363, 423, 559
BmcAI AGTACT 1 cut(s) 795
Bme1390I CCNGG 2 cut(s) 333, 395
BmiI GGNNCC 2 cut(s) 176, 611
BmrFI CCNGG 2 cut(s) 333, 395
BmsI GCATC 2 cut(s) 12, 686
BsaBI GATNNNNATC 3 cut(s) 173, 473, 533
BsaJI CCNNGG 2 cut(s) 51, 300
BsaWI WCCGGW 1 cut(s) 757
Bsc4I CCNNNNNNNGG 1 cut(s) 197
Bse118I RCCGGY 1 cut(s) 25
Bse1I ACTGG 1 cut(s) 871
Bse8I GATNNNNATC 3 cut(s) 173, 473, 533
BseBI CCWGG 2 cut(s) 333, 395
BseDI CCNNGG 2 cut(s) 51, 300
BseGI GGATG 4 cut(s) 79, 295, 754, 862
BseJI GATNNNNATC 3 cut(s) 173, 473, 533
BseLI CCNNNNNNNGG 1 cut(s) 197
BseMII CTCAG 4 cut(s) 107, 183, 224, 479
BseNI ACTGG 1 cut(s) 871
BseXI GCAGC 2 cut(s) 348, 408
BseYI CCCAGC 1 cut(s) 312
BshFI GGCC 1 cut(s) 336
BsiSI CCGG 2 cut(s) 26, 758
BslI CCNNNNNNNGG 1 cut(s) 197
BsnI GGCC 1 cut(s) 336
Bsp143I GATC 6 cut(s) 108, 174, 325, 656, 751, 867
BspACI CCGC 5 cut(s) 29, 147, 257, 424, 558
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 4 cut(s) 106, 184, 223, 478
BspLI GGNNCC 2 cut(s) 176, 611
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 6 cut(s) 116, 169, 182, 333, 664, 862
BsrFI RCCGGY 1 cut(s) 25
BsrI ACTGG 1 cut(s) 871
BssAI RCCGGY 1 cut(s) 25
BssECI CCNNGG 2 cut(s) 51, 300
BssMI GATC 6 cut(s) 108, 174, 325, 656, 751, 867
BssSI CACGAG 1 cut(s) 647
BssT1I CCWWGG 1 cut(s) 300
Bst2BI CACGAG 1 cut(s) 647
Bst2UI CCWGG 2 cut(s) 333, 395
Bst4CI ACNGT 1 cut(s) 511
Bst6I CTCTTC 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 27
BstDEI CTNAG 5 cut(s) 93, 192, 210, 465, 602
BstDSI CCRYGG 1 cut(s) 51
BstF5I GGATG 4 cut(s) 79, 295, 754, 862
BstKTI GATC 6 cut(s) 111, 177, 328, 659, 754, 870
BstMBI GATC 6 cut(s) 108, 174, 325, 656, 751, 867
BstMWI GCNNNNNNNGC 4 cut(s) 35, 367, 681, 716
BstNI CCWGG 2 cut(s) 333, 395
BstNSI RCATGY 1 cut(s) 280
BstSCI CCNGG 2 cut(s) 331, 393
BstSFI CTRYAG 1 cut(s) 411
BstV1I GCAGC 2 cut(s) 348, 408
BstX2I RGATCY 4 cut(s) 108, 174, 325, 656
BstXI CCANNNNNNTGG 1 cut(s) 653
BstYI RGATCY 4 cut(s) 108, 174, 325, 656
BsuRI GGCC 1 cut(s) 336
BtgI CCRYGG 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 538
BtsCI GGATG 4 cut(s) 79, 295, 754, 862
BtsIMutI CAGTG 2 cut(s) 101, 507
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 27
Cfr10I RCCGGY 1 cut(s) 25
Csp6I GTAC 3 cut(s) 317, 494, 794
CviAII CATG 3 cut(s) 277, 497, 598
CviQI GTAC 3 cut(s) 317, 494, 794
DdeI CTNAG 5 cut(s) 93, 192, 210, 465, 602
DpnI GATC 6 cut(s) 110, 176, 327, 658, 753, 869
DpnII GATC 6 cut(s) 108, 174, 325, 656, 751, 867
Eam1104I CTCTTC 1 cut(s) 821
EarI CTCTTC 1 cut(s) 821
EciI GGCGGA 2 cut(s) 44, 136
Eco130I CCWWGG 1 cut(s) 300
EcoRI GAATTC 1 cut(s) 42
EcoRII CCWGG 2 cut(s) 331, 393
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 3 cut(s) 280, 500, 601
FalI AAGNNNNNCTT 2 cut(s) 273, 305
FatI CATG 3 cut(s) 276, 496, 597
FbaI TGATCA 1 cut(s) 751
Fnu4HI GCNGC 3 cut(s) 362, 422, 558
FokI GGATG 4 cut(s) 86, 282, 741, 849
Fsp4HI GCNGC 3 cut(s) 362, 422, 558
FspBI CTAG 2 cut(s) 399, 809
GluI GCNGC 3 cut(s) 362, 422, 558
GsaI CCCAGC 1 cut(s) 316
HaeIII GGCC 1 cut(s) 336
HapII CCGG 2 cut(s) 26, 758
Hin1II CATG 3 cut(s) 280, 500, 601
HincII GTYRAC 2 cut(s) 90, 445
HindII GTYRAC 2 cut(s) 90, 445
HindIII AAGCTT 1 cut(s) 403
HinfI GANTC 3 cut(s) 8, 86, 620
HpaII CCGG 2 cut(s) 26, 758
HphI GGTGA 2 cut(s) 383, 670
Hpy166II GTNNAC 2 cut(s) 90, 445
Hpy188I TCNGA 5 cut(s) 213, 468, 765, 827, 867
Hpy188III TCNNGA 1 cut(s) 749
Hpy8I GTNNAC 2 cut(s) 90, 445
HpyAV CCTTC 4 cut(s) 208, 347, 600, 627
HpyCH4III ACNGT 1 cut(s) 511
HpyCH4IV ACGT 1 cut(s) 447
HpyCH4V TGCA 1 cut(s) 280
HpyF10VI GCNNNNNNNGC 4 cut(s) 35, 367, 681, 716
HpyF3I CTNAG 5 cut(s) 93, 192, 210, 465, 602
HpySE526I ACGT 1 cut(s) 447
Hsp92II CATG 3 cut(s) 280, 500, 601
KroI GCCGGC 1 cut(s) 25
KroNI GCCGGC 1 cut(s) 27
Ksp22I TGATCA 1 cut(s) 751
Kzo9I GATC 6 cut(s) 108, 174, 325, 656, 751, 867
Lsp1109I GCAGC 2 cut(s) 348, 408
LweI GCATC 2 cut(s) 12, 686
MaeI CTAG 2 cut(s) 399, 809
MaeII ACGT 1 cut(s) 447
MaeIII GTNAC 1 cut(s) 661
MalI GATC 6 cut(s) 110, 176, 327, 658, 753, 869
MboI GATC 6 cut(s) 108, 174, 325, 656, 751, 867
MboII GAAGA 5 cut(s) 320, 597, 642, 649, 808
MflI RGATCY 4 cut(s) 108, 174, 325, 656
MluCI AATT 1 cut(s) 42
MlyI GAGTC 2 cut(s) 95, 629
MmeI TCCRAC 3 cut(s) 182, 502, 634
MnlI CCTC 5 cut(s) 575, 643, 698, 824, 846
MroNI GCCGGC 1 cut(s) 25
MroXI GAANNNNTTC 1 cut(s) 795
MseI TTAA 3 cut(s) 81, 734, 770
MspI CCGG 2 cut(s) 26, 758
MspR9I CCNGG 2 cut(s) 333, 395
MvaI CCWGG 2 cut(s) 333, 395
MwoI GCNNNNNNNGC 4 cut(s) 35, 367, 681, 716
NaeI GCCGGC 1 cut(s) 27
NdeII GATC 6 cut(s) 108, 174, 325, 656, 751, 867
NgoMIV GCCGGC 1 cut(s) 25
NlaIII CATG 3 cut(s) 280, 500, 601
NlaIV GGNNCC 2 cut(s) 176, 611
NmeAIII GCCGAG 1 cut(s) 329
NmuCI GTSAC 1 cut(s) 661
NspI RCATGY 1 cut(s) 280
PaqCI CACCTGC 1 cut(s) 689
PcsI WCGNNNNNNNCGW 1 cut(s) 59
PdiI GCCGGC 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 795
PfeI GAWTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 363, 423, 559
PleI GAGTC 2 cut(s) 94, 628
PpsI GAGTC 2 cut(s) 94, 628
Psp6I CCWGG 2 cut(s) 331, 393
PspFI CCCAGC 1 cut(s) 312
PspGI CCWGG 2 cut(s) 331, 393
PspN4I GGNNCC 2 cut(s) 176, 611
PsrI GAACNNNNNNTAC 4 cut(s) 276, 308, 758, 790
PsuI RGATCY 4 cut(s) 108, 174, 325, 656
RsaI GTAC 3 cut(s) 318, 495, 795
RsaNI GTAC 3 cut(s) 317, 494, 794
SaqAI TTAA 3 cut(s) 81, 734, 770
SatI GCNGC 3 cut(s) 362, 422, 558
Sau3AI GATC 6 cut(s) 108, 174, 325, 656, 751, 867
ScaI AGTACT 1 cut(s) 795
SchI GAGTC 2 cut(s) 95, 629
ScrFI CCNGG 2 cut(s) 333, 395
SfaNI GCATC 2 cut(s) 12, 686
SfcI CTRYAG 1 cut(s) 411
SpeI ACTAGT 1 cut(s) 808
Sse9I AATT 1 cut(s) 42
SsiI CCGC 5 cut(s) 29, 147, 257, 424, 558
SspMI CTAG 2 cut(s) 399, 809
StyD4I CCNGG 2 cut(s) 331, 393
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 1 cut(s) 511
TaiI ACGT 1 cut(s) 450
TaqI TCGA 1 cut(s) 618
TasI AATT 1 cut(s) 42
TatI WGTACW 1 cut(s) 793
TauI GCSGC 1 cut(s) 560
TfiI GAWTC 1 cut(s) 8
Tru1I TTAA 3 cut(s) 81, 734, 770
Tru9I TTAA 3 cut(s) 81, 734, 770
TscAI CASTG 2 cut(s) 101, 514
TseFI GTSAC 1 cut(s) 661
TseI GCWGC 2 cut(s) 361, 421
Tsp45I GTSAC 1 cut(s) 661
TspDTI ATGAA 6 cut(s) 212, 245, 284, 541, 586, 808
TspGWI ACGGA 1 cut(s) 20
TspRI CASTG 2 cut(s) 101, 514
XapI RAATTY 1 cut(s) 42
XceI RCATGY 1 cut(s) 280
XmnI GAANNNNTTC 1 cut(s) 795
XspI CTAG 2 cut(s) 399, 809
ZrmI AGTACT 1 cut(s) 795
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.