Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012412

Physical Location & Seq

Genomic Coordinates Forward (+)

46352818 .. 46356832

Gene Structure 4015 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1343500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACGAGAATGCCACTGCCATTGTTGAGCTCTGCTCCCATGGAGGCCGTCTCCATGCTCTTCAATTGGTGGGACGAGATCAACGAGTCCTCCCGGTGGCAGGACGGCTTGTTCTACGCTCTCTGCGCCTCCTACGCCCTCGTCTCTTCCGTCGCTCTGTTTCAACTAATAAGGATTGAATTGAGAGTGCCAGAATACGGGTGGACGACGCAGAAGGTTTTTCATCTCATGAACTTCATTGTTAACGGAGTACGAGCAATTGTTTTCGGATTTCACAGTCAAGTGTTTCAGTTGCACCCGAGGGTACTAATATTGGCCTTGTTGGATCTTCCTGGACTGCTATTTTTCTCTACGTACACACTTCTTGTCCTCTTTTGGGCGGAGATTTATCACCAGGCAAGAAGTTTACCAACTGATAAGCTGAGGATTGTTTATGTATCAGTCAACGCTATCATGTACTTTATACAGGTTTGCATCTGGATATACCTCTGGATAGACGACAACAGTGTCGTTGAGCTCATTGGAAAGATATTCATTGCAGTTGTGTCATTTGTGGCTGCACTAGGCTTCTTGATATACGGAGGAAGGTTATTTTTCATGCTGAGACGCTTCCCCATTGAATCTAAAGGGAGAAGGAAGAAACTTCATGAGGTCGGATCGGTTACAGCCATATGTTTCACCTGCTTTCTCATAAGATGCTTTGTGGTTGTCCTATCGGCTTTTGATGCAGACGCATCACTTGATGTTTTGGATCATCCGGTTTTGAACGTGATATACTACATGCTGGTTGAGATCCTGCCTTCAGCACTAGTCCTTTACATCTTGCGCAAACTGCCCCCCAAGAGGGTATCGGCTCAGCATCATCCGATCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

292

Amino Acids

33.53

Weight (kDa)

8.95

Isoelectric Point (pI)

41.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	22 - 291	1.8e-140	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21790
fragaria_vesca	FvH4_3g02360 FvH4_3g02360
malus_domestica	MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica	Prupe.4G023400_v2.0.a1
pyrus_communis	pycom05g31290
rosa_chinensis	RchiOBHm_Chr5g0003581
rosa_laevigata	RLG00000031154
rosa_multiflora	Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072380
rosa_rugosa	Rorug04G0404700 Rorug04G0404800
rosa_samantha	Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana	Rw5G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	689
AasI	GACNNNNNNGTC	1 cut(s)	506
Acc16I	TGCGCA	1 cut(s)	827
Acc36I	ACCTGC	1 cut(s)	689
AciI	CCGC	1 cut(s)	380
AclWI	GGATC	5 cut(s)	333, 664, 759, 787, 862
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	4 cut(s)	252, 306, 356, 458
AfiI	CCNNNNNNNGG	6 cut(s)	96, 100, 197, 376, 843, 844
AgsI	TTSAA	5 cut(s)	64, 164, 179, 620, 766
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	331, 393
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	3 cut(s)	30, 421, 517
AluI	AGCT	3 cut(s)	30, 421, 517
Alw21I	GWGCWC	2 cut(s)	32, 519
Alw26I	GTCTC	3 cut(s)	55, 148, 598
AlwI	GGATC	5 cut(s)	333, 664, 759, 787, 862
Ama87I	CYCGRG	1 cut(s)	298
AoxI	GGCC	2 cut(s)	45, 315
ApeKI	GCWGC	1 cut(s)	557
AspLEI	GCGC	2 cut(s)	128, 828
AsuC2I	CCSGG	1 cut(s)	94
AsuHPI	GGTGA	2 cut(s)	383, 670
AvaI	CYCGRG	1 cut(s)	298
BanII	GRGCYC	2 cut(s)	32, 519
Bbv12I	GWGCWC	2 cut(s)	32, 519
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	544
BceAI	ACGGC	2 cut(s)	32, 121
BciT130I	CCWGG	2 cut(s)	333, 395
BcnI	CCSGG	1 cut(s)	94
BcoDI	GTCTC	3 cut(s)	55, 148, 598
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	2 cut(s)	563, 809
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	1 cut(s)	558
BlpI	GCTNAGC	1 cut(s)	855
BlsI	GCNGC	1 cut(s)	559
Bme1390I	CCNGG	3 cut(s)	94, 333, 395
BmeT110I	CYCGRG	1 cut(s)	298
BmrFI	CCNGG	3 cut(s)	94, 333, 395
BmsI	GCATC	5 cut(s)	483, 686, 715, 743, 868
BplI	GAGNNNNNCTC	4 cut(s)	19, 51, 35, 67
Bpu10I	CCTNAGC	1 cut(s)	422
Bpu1102I	GCTNAGC	1 cut(s)	855
BpuMI	CCSGG	1 cut(s)	94
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	39, 299
BsaWI	WCCGGW	1 cut(s)	757
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	6 cut(s)	96, 100, 197, 376, 843, 844
Bse3DI	GCAATG	1 cut(s)	534
BseBI	CCWGG	2 cut(s)	333, 395
BseDI	CCNNGG	2 cut(s)	39, 299
BseGI	GGATG	2 cut(s)	754, 862
BseLI	CCNNNNNNNGG	6 cut(s)	96, 100, 197, 376, 843, 844
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	413, 593, 869
BseXI	GCAGC	1 cut(s)	544
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	2 cut(s)	47, 317
BsiHKAI	GWGCWC	2 cut(s)	32, 519
BsiHKCI	CYCGRG	1 cut(s)	298
BsiSI	CCGG	2 cut(s)	94, 758
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	6 cut(s)	96, 100, 197, 376, 843, 844
BsmAI	GTCTC	3 cut(s)	55, 148, 598
BsmBI	CGTCTC	3 cut(s)	55, 148, 598
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	2 cut(s)	47, 317
BsoBI	CYCGRG	1 cut(s)	298
Bsp1286I	GDGCHC	2 cut(s)	32, 519
Bsp143I	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
Bsp1720I	GCTNAGC	1 cut(s)	855
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	1 cut(s)	380
BspANI	GGCC	2 cut(s)	47, 317
BspCNI	CTCAG	3 cut(s)	414, 594, 868
BspHI	TCATGA	2 cut(s)	228, 646
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	5 cut(s)	333, 664, 759, 787, 862
BspQI	GCTCTTC	1 cut(s)	65
BsrDI	GCAATG	1 cut(s)	534
BssECI	CCNNGG	2 cut(s)	39, 299
BssMI	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
BssT1I	CCWWGG	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	333, 395
Bst4CI	ACNGT	2 cut(s)	278, 506
Bst6I	CTCTTC	2 cut(s)	65, 151
BstBAI	YACGTR	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	422, 602, 855
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	2 cut(s)	754, 862
BstHHI	GCGC	2 cut(s)	128, 828
BstKTI	GATC	6 cut(s)	81, 328, 659, 754, 795, 870
BstMAI	GTCTC	3 cut(s)	55, 148, 598
BstMBI	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
BstMWI	GCNNNNNNNGC	4 cut(s)	125, 134, 725, 832
BstNI	CCWGG	2 cut(s)	333, 395
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	3 cut(s)	92, 331, 393
BstSNI	TACGTA	1 cut(s)	354
BstV1I	GCAGC	1 cut(s)	544
BstX2I	RGATCY	2 cut(s)	325, 792
BstYI	RGATCY	2 cut(s)	325, 792
BsuRI	GGCC	2 cut(s)	47, 317
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	2 cut(s)	754, 862
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	2 cut(s)	14, 511
BveI	ACCTGC	1 cut(s)	689
CciI	TCATGA	2 cut(s)	228, 646
CfoI	GCGC	2 cut(s)	128, 828
CseI	GACGC	3 cut(s)	217, 615, 740
Csp6I	GTAC	4 cut(s)	251, 305, 355, 457
CspCI	CAANNNNNGTGG	1 cut(s)	38
CviAII	CATG	7 cut(s)	40, 55, 229, 454, 598, 647, 781
CviQI	GTAC	4 cut(s)	251, 305, 355, 457
DdeI	CTNAG	3 cut(s)	422, 602, 855
DpnI	GATC	6 cut(s)	80, 327, 658, 753, 794, 869
DpnII	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
DrdI	GACNNNNNNGTC	1 cut(s)	506
DseDI	GACNNNNNNGTC	1 cut(s)	506
Eam1104I	CTCTTC	2 cut(s)	65, 151
EarI	CTCTTC	2 cut(s)	65, 151
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	2 cut(s)	30, 517
Eco105I	TACGTA	1 cut(s)	354
Eco130I	CCWWGG	1 cut(s)	39
Eco24I	GRGCYC	2 cut(s)	32, 519
Eco53kI	GAGCTC	2 cut(s)	30, 517
Eco57I	CTGAAG	1 cut(s)	786
Eco88I	CYCGRG	1 cut(s)	298
EcoICRI	GAGCTC	2 cut(s)	30, 517
EcoRII	CCWGG	2 cut(s)	331, 393
EcoT14I	CCWWGG	1 cut(s)	39
EcoT38I	GRGCYC	2 cut(s)	32, 519
ErhI	CCWWGG	1 cut(s)	39
Esp3I	CGTCTC	3 cut(s)	55, 148, 598
FaeI	CATG	7 cut(s)	43, 58, 232, 457, 601, 650, 784
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	7 cut(s)	39, 54, 228, 453, 597, 646, 780
FauNDI	CATATG	1 cut(s)	671
Fnu4HI	GCNGC	1 cut(s)	558
FokI	GGATG	2 cut(s)	741, 849
FriOI	GRGCYC	2 cut(s)	32, 519
Fsp4HI	GCNGC	1 cut(s)	558
FspBI	CTAG	2 cut(s)	563, 809
FspI	TGCGCA	1 cut(s)	827
GlaI	GCGC	2 cut(s)	127, 827
GluI	GCNGC	1 cut(s)	558
HaeIII	GGCC	2 cut(s)	47, 317
HapII	CCGG	2 cut(s)	94, 758
HgaI	GACGC	3 cut(s)	217, 615, 740
HhaI	GCGC	2 cut(s)	128, 828
Hin1II	CATG	7 cut(s)	43, 58, 232, 457, 601, 650, 784
Hin6I	GCGC	2 cut(s)	126, 826
HinP1I	GCGC	2 cut(s)	126, 826
HincII	GTYRAC	2 cut(s)	244, 445
HindII	GTYRAC	2 cut(s)	244, 445
HinfI	GANTC	2 cut(s)	86, 620
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	94, 758
HphI	GGTGA	2 cut(s)	383, 670
Hpy166II	GTNNAC	5 cut(s)	204, 244, 357, 407, 445
Hpy188I	TCNGA	3 cut(s)	269, 656, 867
Hpy188III	TCNNGA	5 cut(s)	229, 478, 490, 571, 647
Hpy8I	GTNNAC	5 cut(s)	204, 244, 357, 407, 445
Hpy99I	CGWCG	2 cut(s)	155, 211
HpyAV	CCTTC	4 cut(s)	208, 579, 627, 810
HpyCH4III	ACNGT	2 cut(s)	278, 506
HpyCH4IV	ACGT	2 cut(s)	353, 768
HpyCH4V	TGCA	5 cut(s)	295, 474, 539, 560, 728
HpyF10VI	GCNNNNNNNGC	4 cut(s)	125, 134, 725, 832
HpyF3I	CTNAG	3 cut(s)	422, 602, 855
HpySE526I	ACGT	2 cut(s)	353, 768
Hsp92II	CATG	7 cut(s)	43, 58, 232, 457, 601, 650, 784
HspAI	GCGC	2 cut(s)	126, 826
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
LguI	GCTCTTC	1 cut(s)	65
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	1 cut(s)	544
LweI	GCATC	5 cut(s)	483, 686, 715, 743, 868
MaeI	CTAG	2 cut(s)	563, 809
MaeII	ACGT	2 cut(s)	353, 768
MaeIII	GTNAC	1 cut(s)	661
MalI	GATC	6 cut(s)	80, 327, 658, 753, 794, 869
MboI	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
MboII	GAAGA	4 cut(s)	52, 138, 320, 649
MfeI	CAATTG	2 cut(s)	64, 258
MflI	RGATCY	2 cut(s)	325, 792
MhlI	GDGCHC	2 cut(s)	32, 519
MluCI	AATT	3 cut(s)	64, 179, 258
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	2 cut(s)	303, 634
MseI	TTAA	1 cut(s)	243
MspI	CCGG	2 cut(s)	94, 758
MspR9I	CCNGG	3 cut(s)	94, 333, 395
MunI	CAATTG	2 cut(s)	64, 258
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	333, 395
MwoI	GCNNNNNNNGC	4 cut(s)	125, 134, 725, 832
NciI	CCSGG	1 cut(s)	94
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
NlaIII	CATG	7 cut(s)	43, 58, 232, 457, 601, 650, 784
NsbI	TGCGCA	1 cut(s)	827
NspI	RCATGY	1 cut(s)	784
PagI	TCATGA	2 cut(s)	228, 646
PaqCI	CACCTGC	1 cut(s)	689
PciSI	GCTCTTC	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 147
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	620
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	1 cut(s)	559
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	354
Psp124BI	GAGCTC	2 cut(s)	32, 519
Psp6I	CCWGG	2 cut(s)	331, 393
PspGI	CCWGG	2 cut(s)	331, 393
PsrI	GAACNNNNNNTAC	2 cut(s)	758, 790
PsuI	RGATCY	2 cut(s)	325, 792
RsaI	GTAC	4 cut(s)	252, 306, 356, 458
RsaNI	GTAC	4 cut(s)	251, 305, 355, 457
SacI	GAGCTC	2 cut(s)	32, 519
SapI	GCTCTTC	1 cut(s)	65
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	1 cut(s)	558
Sau3AI	GATC	6 cut(s)	78, 325, 656, 751, 792, 867
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	3 cut(s)	94, 333, 395
SduI	GDGCHC	2 cut(s)	32, 519
SfaNI	GCATC	5 cut(s)	483, 686, 715, 743, 868
SnaBI	TACGTA	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	3 cut(s)	64, 179, 258
SsiI	CCGC	1 cut(s)	380
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	563, 809
SstI	GAGCTC	2 cut(s)	32, 519
StyD4I	CCNGG	3 cut(s)	92, 331, 393
StyI	CCWWGG	1 cut(s)	39
TaaI	ACNGT	2 cut(s)	278, 506
TaiI	ACGT	2 cut(s)	356, 771
TasI	AATT	3 cut(s)	64, 179, 258
TatI	WGTACW	1 cut(s)	456
TfiI	GAWTC	1 cut(s)	620
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	2 cut(s)	21, 511
TseI	GCWGC	1 cut(s)	557
TspDTI	ATGAA	6 cut(s)	212, 226, 245, 523, 586, 635
TspGWI	ACGGA	4 cut(s)	139, 261, 594, 860
TspRI	CASTG	2 cut(s)	21, 511
XceI	RCATGY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	1 cut(s)	198
XspI	CTAG	2 cut(s)	563, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.