Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004279.1

Orthogroup ID

OG0012412

Physical Location & Seq

Genomic Coordinates Forward (+)

11172 .. 14656

Gene Structure 3485 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004279.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

atgccaccgccttcgctgctgacgtcggcgccgatggaggccgtggcgttcgtgatggcctggtgggacgatatcaacgagtcgacgaagtggcaggacggcatcttctattctctctgcgccgcctacgccctcgtctcctccgtcgctctgtttcaactaataaggattgaattgagagtgccggagtacggttggacgacgcagaaggtgtttcatcttatgaatttcattgtcaatggagtgcgagcaattgtctttggatttcacaagcaagtctttctcttgcaaccaagggtgttgatattggtcttattggatcttcctggactgctattcttctcaacgtacacacttcttgtcctattttgggcagagatatatcaccaggcgagaagtttaccgacagataagctcaggattgtttatatttcagtcaatggtggaatgtacttcgtacagatttgcctctggatatacctctggtttgatgacaacagcgttgtggagttcattggaaagatatttattgcagctgtgtcatttgtggctgcactaggtttcttaatttatggaggaaggttatttttcatgctgagacgtttcccaattgaatctaaagggagaaggaagaaacttcatgaggttggatctgttacagccatatgttttacctgctttctcataagatgctttgtggatgtgttgtctgcttttgatgatgatgcatcacttgatgttttggatcatcctattttgaatgcgttctactacatgctggttgagatcctgccctcagccttagtcctcttcatcttgcgcaaattaccccccaagagagtatcagctcagtatcatccaatacgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

289

Amino Acids

33.24

Weight (kDa)

8.54

Isoelectric Point (pI)

44.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21790
fragaria_vesca	FvH4_3g02360 FvH4_3g02360
malus_domestica	MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica	Prupe.4G023400_v2.0.a1
pyrus_communis	pycom05g31290
rosa_chinensis	RchiOBHm_Chr5g0003581
rosa_laevigata	RLG00000031154
rosa_multiflora	Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072380
rosa_rugosa	Rorug04G0404700 Rorug04G0404800
rosa_samantha	Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana	Rw5G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	26
Acc16I	TGCGCA	1 cut(s)	821
Acc36I	ACCTGC	1 cut(s)	683
AccB1I	GGYRCC	1 cut(s)	28
AccI	GTMKAC	1 cut(s)	83
AciI	CCGC	2 cut(s)	8, 123
AclWI	GGATC	4 cut(s)	327, 658, 753, 781
AcsI	RAATTY	1 cut(s)	226
AcyI	GRCGYC	2 cut(s)	23, 29
AfaI	GTAC	4 cut(s)	191, 350, 452, 459
AfiI	CCNNNNNNNGG	2 cut(s)	191, 370
AgsI	TTSAA	4 cut(s)	158, 173, 614, 760
AjnI	CCWGG	3 cut(s)	59, 325, 387
AluBI	AGCT	3 cut(s)	415, 536, 848
AluI	AGCT	3 cut(s)	415, 536, 848
Alw26I	GTCTC	2 cut(s)	142, 592
AlwI	GGATC	4 cut(s)	327, 658, 753, 781
AoxI	GGCC	2 cut(s)	39, 57
ApeKI	GCWGC	3 cut(s)	16, 533, 551
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	764
AspLEI	GCGC	3 cut(s)	31, 122, 822
AsuHPI	GGTGA	1 cut(s)	377
BanI	GGYRCC	1 cut(s)	28
BbvCI	CCTCAGC	1 cut(s)	796
BbvI	GCAGC	3 cut(s)	3, 538, 545
BccI	CCATC	2 cut(s)	28, 49
BceAI	ACGGC	2 cut(s)	26, 115
BciT130I	CCWGG	3 cut(s)	61, 327, 389
BcoDI	GTCTC	2 cut(s)	142, 592
BfaI	CTAG	1 cut(s)	557
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	683
BisI	GCNGC	4 cut(s)	17, 123, 534, 552
BlsI	GCNGC	4 cut(s)	18, 124, 535, 553
Bme1390I	CCNGG	3 cut(s)	61, 327, 389
BmiI	GGNNCC	1 cut(s)	30
BmrFI	CCNGG	3 cut(s)	61, 327, 389
BmsI	GCATC	4 cut(s)	111, 680, 715, 737
Bpu10I	CCTNAGC	2 cut(s)	416, 796
BsaHI	GRCGYC	2 cut(s)	23, 29
BsaJI	CCNNGG	2 cut(s)	42, 293
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 370
BseBI	CCWGG	3 cut(s)	61, 327, 389
BseDI	CCNNGG	2 cut(s)	42, 293
BseGI	GGATG	3 cut(s)	706, 748, 856
BseLI	CCNNNNNNNGG	2 cut(s)	191, 370
BseMII	CTCAG	4 cut(s)	430, 587, 810, 863
BseRI	GAGGAG	1 cut(s)	130
BseXI	GCAGC	3 cut(s)	3, 538, 545
BsgI	GTGCAG	1 cut(s)	537
BshFI	GGCC	2 cut(s)	41, 59
BshNI	GGYRCC	1 cut(s)	28
BsiSI	CCGG	1 cut(s)	185
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	2 cut(s)	191, 370
BsmAI	GTCTC	2 cut(s)	142, 592
BsmBI	CGTCTC	2 cut(s)	142, 592
BsmFI	GGGAC	1 cut(s)	80
BsmI	GAATGC	1 cut(s)	766
BsnI	GGCC	2 cut(s)	41, 59
Bsp143I	GATC	4 cut(s)	319, 650, 745, 786
BspACI	CCGC	2 cut(s)	8, 123
BspANI	GGCC	2 cut(s)	41, 59
BspCNI	CTCAG	4 cut(s)	429, 588, 809, 862
BspHI	TCATGA	1 cut(s)	640
BspLI	GGNNCC	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	683
BspPI	GGATC	4 cut(s)	327, 658, 753, 781
BspT107I	GGYRCC	1 cut(s)	28
BssECI	CCNNGG	2 cut(s)	42, 293
BssMI	GATC	4 cut(s)	319, 650, 745, 786
BssNI	GRCGYC	2 cut(s)	23, 29
BssT1I	CCWWGG	1 cut(s)	293
Bst2UI	CCWGG	3 cut(s)	61, 327, 389
Bst4CI	ACNGT	1 cut(s)	194
Bst6I	CTCTTC	1 cut(s)	815
BstACI	GRCGYC	2 cut(s)	23, 29
BstC8I	GCNNGC	1 cut(s)	249
BstDEI	CTNAG	5 cut(s)	416, 596, 796, 802, 849
BstDSI	CCRYGG	1 cut(s)	42
BstF5I	GGATG	3 cut(s)	706, 748, 856
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	3 cut(s)	31, 122, 822
BstKTI	GATC	4 cut(s)	322, 653, 748, 789
BstMAI	GTCTC	2 cut(s)	142, 592
BstMBI	GATC	4 cut(s)	319, 650, 745, 786
BstMWI	GCNNNNNNNGC	2 cut(s)	16, 128
BstNI	CCWGG	3 cut(s)	61, 327, 389
BstNSI	RCATGY	1 cut(s)	778
BstSCI	CCNGG	3 cut(s)	59, 325, 387
BstV1I	GCAGC	3 cut(s)	3, 538, 545
BstX2I	RGATCY	3 cut(s)	319, 650, 786
BstYI	RGATCY	3 cut(s)	319, 650, 786
BsuRI	GGCC	2 cut(s)	41, 59
BtgI	CCRYGG	1 cut(s)	42
BtsCI	GGATG	3 cut(s)	706, 748, 856
BveI	ACCTGC	1 cut(s)	683
Cac8I	GCNNGC	1 cut(s)	249
CciI	TCATGA	1 cut(s)	640
CfoI	GCGC	3 cut(s)	31, 122, 822
CseI	GACGC	1 cut(s)	211
Csp6I	GTAC	4 cut(s)	190, 349, 451, 458
CviAII	CATG	3 cut(s)	592, 641, 775
CviJI	RGCY	8 cut(s)	41, 59, 415, 536, 551, 662, 800, 848
CviKI_1	RGCY	8 cut(s)	41, 59, 415, 536, 551, 662, 800, 848
CviQI	GTAC	4 cut(s)	190, 349, 451, 458
DdeI	CTNAG	5 cut(s)	416, 596, 796, 802, 849
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	4 cut(s)	321, 652, 747, 788
DpnII	GATC	4 cut(s)	319, 650, 745, 786
Eam1104I	CTCTTC	1 cut(s)	815
EarI	CTCTTC	1 cut(s)	815
Eco130I	CCWWGG	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	73
EcoRII	CCWGG	3 cut(s)	59, 325, 387
EcoRV	GATATC	1 cut(s)	73
EcoT14I	CCWWGG	1 cut(s)	293
EcoT22I	ATGCAT	1 cut(s)	730
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	2 cut(s)	142, 592
FaeI	CATG	3 cut(s)	595, 644, 778
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	591, 640, 774
FauNDI	CATATG	1 cut(s)	665
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	4 cut(s)	17, 123, 534, 552
FokI	GGATG	3 cut(s)	713, 735, 843
Fsp4HI	GCNGC	4 cut(s)	17, 123, 534, 552
FspBI	CTAG	1 cut(s)	557
FspI	TGCGCA	1 cut(s)	821
GlaI	GCGC	3 cut(s)	30, 121, 821
GluI	GCNGC	4 cut(s)	17, 123, 534, 552
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	2 cut(s)	41, 59
HapII	CCGG	1 cut(s)	185
HgaI	GACGC	1 cut(s)	211
HhaI	GCGC	3 cut(s)	31, 122, 822
Hin1I	GRCGYC	2 cut(s)	23, 29
Hin1II	CATG	3 cut(s)	595, 644, 778
Hin6I	GCGC	3 cut(s)	29, 120, 820
HinP1I	GCGC	3 cut(s)	29, 120, 820
HincII	GTYRAC	1 cut(s)	84
HindII	GTYRAC	1 cut(s)	84
HinfI	GANTC	2 cut(s)	80, 614
HpaII	CCGG	1 cut(s)	185
HphI	GGTGA	1 cut(s)	377
Hpy166II	GTNNAC	3 cut(s)	84, 351, 401
Hpy188III	TCNNGA	4 cut(s)	52, 418, 472, 641
Hpy8I	GTNNAC	3 cut(s)	84, 351, 401
Hpy99I	CGWCG	4 cut(s)	28, 88, 149, 205
HpyAV	CCTTC	4 cut(s)	21, 202, 573, 621
HpyCH4III	ACNGT	1 cut(s)	194
HpyCH4IV	ACGT	4 cut(s)	23, 347, 601, 865
HpyCH4V	TGCA	4 cut(s)	289, 533, 554, 728
HpyF10VI	GCNNNNNNNGC	2 cut(s)	16, 128
HpyF3I	CTNAG	5 cut(s)	416, 596, 796, 802, 849
HpySE526I	ACGT	4 cut(s)	23, 347, 601, 865
Hsp92I	GRCGYC	2 cut(s)	23, 29
Hsp92II	CATG	3 cut(s)	595, 644, 778
HspAI	GCGC	3 cut(s)	29, 120, 820
KasI	GGCGCC	1 cut(s)	28
Kzo9I	GATC	4 cut(s)	319, 650, 745, 786
Lsp1109I	GCAGC	3 cut(s)	3, 538, 545
LweI	GCATC	4 cut(s)	111, 680, 715, 737
MaeI	CTAG	1 cut(s)	557
MaeII	ACGT	4 cut(s)	23, 347, 601, 865
MaeIII	GTNAC	1 cut(s)	655
MalI	GATC	4 cut(s)	321, 652, 747, 788
MboI	GATC	4 cut(s)	319, 650, 745, 786
MboII	GAAGA	5 cut(s)	97, 314, 331, 643, 802
MfeI	CAATTG	2 cut(s)	252, 609
MflI	RGATCY	3 cut(s)	319, 650, 786
MluCI	AATT	6 cut(s)	173, 226, 252, 567, 609, 824
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	1 cut(s)	89
MmeI	TCCRAC	2 cut(s)	176, 628
MnlI	CCTC	9 cut(s)	31, 143, 151, 479, 491, 569, 637, 805, 818
Mph1103I	ATGCAT	1 cut(s)	730
MroXI	GAANNNNTTC	1 cut(s)	764
MseI	TTAA	1 cut(s)	566
MspA1I	CMGCKG	1 cut(s)	536
MspI	CCGG	1 cut(s)	185
MspR9I	CCNGG	3 cut(s)	61, 327, 389
MunI	CAATTG	2 cut(s)	252, 609
Mva1269I	GAATGC	1 cut(s)	766
MvaI	CCWGG	3 cut(s)	61, 327, 389
MwoI	GCNNNNNNNGC	2 cut(s)	16, 128
NarI	GGCGCC	1 cut(s)	29
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	4 cut(s)	319, 650, 745, 786
NlaIII	CATG	3 cut(s)	595, 644, 778
NlaIV	GGNNCC	1 cut(s)	30
NsbI	TGCGCA	1 cut(s)	821
NsiI	ATGCAT	1 cut(s)	730
NspI	RCATGY	1 cut(s)	778
PagI	TCATGA	1 cut(s)	640
PcsI	WCGNNNNNNNCGW	4 cut(s)	20, 29, 75, 141
PctI	GAATGC	1 cut(s)	766
PdmI	GAANNNNTTC	1 cut(s)	764
PfeI	GAWTC	1 cut(s)	614
PfoI	TCCNGGA	1 cut(s)	325
PkrI	GCNGC	4 cut(s)	18, 124, 535, 553
PleI	GAGTC	1 cut(s)	88
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	1 cut(s)	88
Psp6I	CCWGG	3 cut(s)	59, 325, 387
PspGI	CCWGG	3 cut(s)	59, 325, 387
PspN4I	GGNNCC	1 cut(s)	30
PsuI	RGATCY	3 cut(s)	319, 650, 786
PvuII	CAGCTG	1 cut(s)	536
RsaI	GTAC	4 cut(s)	191, 350, 452, 459
RsaNI	GTAC	4 cut(s)	190, 349, 451, 458
SalI	GTCGAC	1 cut(s)	82
SaqAI	TTAA	1 cut(s)	566
SatI	GCNGC	4 cut(s)	17, 123, 534, 552
Sau3AI	GATC	4 cut(s)	319, 650, 745, 786
SchI	GAGTC	1 cut(s)	89
ScrFI	CCNGG	3 cut(s)	61, 327, 389
SfaNI	GCATC	4 cut(s)	111, 680, 715, 737
SfoI	GGCGCC	1 cut(s)	30
Sse9I	AATT	6 cut(s)	173, 226, 252, 567, 609, 824
SsiI	CCGC	2 cut(s)	8, 123
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	1 cut(s)	557
StyD4I	CCNGG	3 cut(s)	59, 325, 387
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	194
TaiI	ACGT	4 cut(s)	26, 350, 604, 868
TaqI	TCGA	1 cut(s)	83
TasI	AATT	6 cut(s)	173, 226, 252, 567, 609, 824
TatI	WGTACW	1 cut(s)	450
TauI	GCSGC	1 cut(s)	125
TfiI	GAWTC	1 cut(s)	614
Tru1I	TTAA	1 cut(s)	566
Tru9I	TTAA	1 cut(s)	566
TseI	GCWGC	3 cut(s)	16, 533, 551
TspDTI	ATGAA	7 cut(s)	206, 220, 239, 502, 580, 629, 802
TspGWI	ACGGA	1 cut(s)	133
XapI	RAATTY	1 cut(s)	226
XceI	RCATGY	1 cut(s)	778
XmiI	GTMKAC	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	764
XspI	CTAG	1 cut(s)	557
ZraI	GACGTC	1 cut(s)	24
Zsp2I	ATGCAT	1 cut(s)	730

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.