Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0012412

Physical Location & Seq

Genomic Coordinates Reverse (-)

1100362 .. 1104895

Gene Structure 4534 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G023400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGACGAGAATGCCATTCACATTCACCTCCGCGCCCATGGAGCTCGCCTCTTTCCTCTCCAATTGGTGGGACGAGATCAACGAGAACACCCAATGGCAGGACGGCATCTTCTACGCTCTCTGCGCTGCCTACGCCCTCGTCTCCTCCGTCGCTCTGTTTCAACTAATAAGGATTGAATTGAGAGTGCCCGAATACGGTTGGACCACGCAGAAGGTTTTTCATCTTATGAACTTCATTGTTAATGGAGTACGAGCAATTGTTTTCGGATTTCACCATCAAGTGTTTGCTTTGCACCCGAAGGTACTAATATTGGTCTTGTTGGATCTTCCTGGACTGCTGTTCTTCTCTACGTACACACTTCTTGTTCTCTTCTGGGCAGAGATATATCACCAGGCAAGAAGTTTACCGACAGATAAGCTCAGGGTTGTTTATATTTCAGTCAATGCTGCAATGTACTTTATACAGGTTTGCATCTGGATATACCTCTGGATCGATGACAACAGTGTTGTGGAGTTCATTGGAAAGATATTCATTGCAGTTGTGTCATTTGTGGCTGCACTAGGATTTTTGATATACGGAGGAAGGTTATTTTTCATGCTGAGACGCTTCCCCATTGAATCTAAAGGGAGAAGGAAGAAACTTCACGAGGTTGGATCTGTTACAGCCATATGTTTCACCTGCTTTCTCGTAAGATGCTTTGTGGTTGTCCTATCTGCTTTTGATACAGATGCATCACTTGATGTTTTGGATCATCCAATTTTGAATGTGATCTATTACATGCTGGTTGAGATCCTGCCTTCAGCGCTAGTCCTTTACATCTTGCGCAAATTGCCCCCGAAGAGAGTATCAGCTCAGTATCATCCTATCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

291

Amino Acids

33.51

Weight (kDa)

8.76

Isoelectric Point (pI)

36.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21790
fragaria_vesca	FvH4_3g02360 FvH4_3g02360
malus_domestica	MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica	Prupe.4G023400_v2.0.a1
pyrus_communis	pycom05g31290
rosa_chinensis	RchiOBHm_Chr5g0003581
rosa_laevigata	RLG00000031154
rosa_multiflora	Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072380
rosa_rugosa	Rorug04G0404700 Rorug04G0404800
rosa_samantha	Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana	Rw5G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	686
Acc16I	TGCGCA	1 cut(s)	824
Acc36I	ACCTGC	1 cut(s)	686
AccB7I	CCANNNNNTGG	1 cut(s)	66
AccII	CGCG	1 cut(s)	32
AciI	CCGC	1 cut(s)	30
AclWI	GGATC	5 cut(s)	330, 497, 661, 756, 784
AcuI	CTGAAG	1 cut(s)	783
AfaI	GTAC	4 cut(s)	249, 303, 353, 455
AfeI	AGCGCT	1 cut(s)	804
AfiI	CCNNNNNNNGG	3 cut(s)	66, 97, 194
AgsI	TTSAA	4 cut(s)	161, 176, 617, 763
AjnI	CCWGG	2 cut(s)	328, 390
AluBI	AGCT	3 cut(s)	43, 418, 851
AluI	AGCT	3 cut(s)	43, 418, 851
Alw21I	GWGCWC	1 cut(s)	45
Alw26I	GTCTC	2 cut(s)	145, 595
AlwI	GGATC	5 cut(s)	330, 497, 661, 756, 784
Aor51HI	AGCGCT	1 cut(s)	804
ApeKI	GCWGC	3 cut(s)	125, 446, 554
AspLEI	GCGC	4 cut(s)	34, 125, 805, 825
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	4 cut(s)	16, 263, 380, 667
AvaII	GGWCC	1 cut(s)	201
BaeGI	GKGCMC	1 cut(s)	189
BanII	GRGCYC	1 cut(s)	45
BauI	CACGAG	1 cut(s)	644
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	112, 433, 541
BccI	CCATC	1 cut(s)	282
BceAI	ACGGC	1 cut(s)	118
BciT130I	CCWGG	2 cut(s)	330, 392
BcoDI	GTCTC	2 cut(s)	145, 595
BfaI	CTAG	2 cut(s)	560, 806
BfoI	RGCGCY	1 cut(s)	806
BfuAI	ACCTGC	1 cut(s)	686
BisI	GCNGC	3 cut(s)	126, 447, 555
BlsI	GCNGC	3 cut(s)	127, 448, 556
Bme1390I	CCNGG	2 cut(s)	330, 392
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmrFI	CCNGG	2 cut(s)	330, 392
BmsI	GCATC	5 cut(s)	114, 480, 683, 718, 740
BplI	GAGNNNNNCTC	2 cut(s)	32, 64
Bpu10I	CCTNAGC	1 cut(s)	419
Bsa29I	ATCGAT	1 cut(s)	492
BsaAI	YACGTR	1 cut(s)	351
BsaJI	CCNNGG	1 cut(s)	36
Bsc4I	CCNNNNNNNGG	3 cut(s)	66, 97, 194
Bse3DI	GCAATG	2 cut(s)	456, 531
BseBI	CCWGG	2 cut(s)	330, 392
BseCI	ATCGAT	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	36
BseGI	GGATG	2 cut(s)	751, 859
BseLI	CCNNNNNNNGG	3 cut(s)	66, 97, 194
BseMI	GCAATG	2 cut(s)	456, 531
BseMII	CTCAG	3 cut(s)	433, 590, 866
BseRI	GAGGAG	1 cut(s)	133
BseSI	GKGCMC	1 cut(s)	189
BseXI	GCAGC	3 cut(s)	112, 433, 541
BsgI	GTGCAG	1 cut(s)	540
Bsh1236I	CGCG	1 cut(s)	32
BshVI	ATCGAT	1 cut(s)	492
BsiHKAI	GWGCWC	1 cut(s)	45
BslFI	GGGAC	1 cut(s)	83
BslI	CCNNNNNNNGG	3 cut(s)	66, 97, 194
BsmAI	GTCTC	2 cut(s)	145, 595
BsmBI	CGTCTC	2 cut(s)	145, 595
BsmFI	GGGAC	1 cut(s)	83
BsmI	GAATGC	1 cut(s)	15
Bsp1286I	GDGCHC	2 cut(s)	45, 189
Bsp143I	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
Bsp19I	CCATGG	1 cut(s)	36
BspACI	CCGC	1 cut(s)	30
BspCNI	CTCAG	3 cut(s)	432, 591, 865
BspDI	ATCGAT	1 cut(s)	492
BspFNI	CGCG	1 cut(s)	32
BspMI	ACCTGC	1 cut(s)	686
BspPI	GGATC	5 cut(s)	330, 497, 661, 756, 784
BsrDI	GCAATG	2 cut(s)	456, 531
BssECI	CCNNGG	1 cut(s)	36
BssMI	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
BssSI	CACGAG	1 cut(s)	644
BssT1I	CCWWGG	1 cut(s)	36
Bst2BI	CACGAG	1 cut(s)	644
Bst2UI	CCWGG	2 cut(s)	330, 392
Bst4CI	ACNGT	2 cut(s)	197, 503
Bst6I	CTCTTC	2 cut(s)	374, 833
BstBAI	YACGTR	1 cut(s)	351
BstC8I	GCNNGC	1 cut(s)	45
BstDEI	CTNAG	3 cut(s)	419, 599, 852
BstDSI	CCRYGG	1 cut(s)	36
BstF5I	GGATG	2 cut(s)	751, 859
BstFNI	CGCG	1 cut(s)	32
BstH2I	RGCGCY	1 cut(s)	806
BstHHI	GCGC	4 cut(s)	34, 125, 805, 825
BstKTI	GATC	7 cut(s)	78, 325, 492, 656, 751, 771, 792
BstMAI	GTCTC	2 cut(s)	145, 595
BstMBI	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
BstMWI	GCNNNNNNNGC	5 cut(s)	40, 122, 131, 802, 829
BstNI	CCWGG	2 cut(s)	330, 392
BstNSI	RCATGY	1 cut(s)	781
BstSCI	CCNGG	2 cut(s)	328, 390
BstSLI	GKGCMC	1 cut(s)	189
BstSNI	TACGTA	1 cut(s)	351
BstUI	CGCG	1 cut(s)	32
BstV1I	GCAGC	3 cut(s)	112, 433, 541
BstX2I	RGATCY	3 cut(s)	322, 653, 789
BstYI	RGATCY	3 cut(s)	322, 653, 789
Bsu15I	ATCGAT	1 cut(s)	492
BsuTUI	ATCGAT	1 cut(s)	492
BtgI	CCRYGG	1 cut(s)	36
BtsCI	GGATG	2 cut(s)	751, 859
BtsIMutI	CAGTG	1 cut(s)	508
BveI	ACCTGC	1 cut(s)	686
Cac8I	GCNNGC	1 cut(s)	45
CfoI	GCGC	4 cut(s)	34, 125, 805, 825
Cfr13I	GGNCC	1 cut(s)	201
ClaI	ATCGAT	1 cut(s)	492
CseI	GACGC	1 cut(s)	612
Csp6I	GTAC	4 cut(s)	248, 302, 352, 454
CviAII	CATG	3 cut(s)	37, 595, 778
CviJI	RGCY	5 cut(s)	43, 418, 554, 665, 851
CviKI_1	RGCY	5 cut(s)	43, 418, 554, 665, 851
CviQI	GTAC	4 cut(s)	248, 302, 352, 454
DdeI	CTNAG	3 cut(s)	419, 599, 852
DpnI	GATC	7 cut(s)	77, 324, 491, 655, 750, 770, 791
DpnII	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
Eam1104I	CTCTTC	2 cut(s)	374, 833
EarI	CTCTTC	2 cut(s)	374, 833
Ecl136II	GAGCTC	1 cut(s)	43
Eco105I	TACGTA	1 cut(s)	351
Eco130I	CCWWGG	1 cut(s)	36
Eco24I	GRGCYC	1 cut(s)	45
Eco47I	GGWCC	1 cut(s)	201
Eco47III	AGCGCT	1 cut(s)	804
Eco53kI	GAGCTC	1 cut(s)	43
Eco57I	CTGAAG	1 cut(s)	783
EcoICRI	GAGCTC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	328, 390
EcoT14I	CCWWGG	1 cut(s)	36
EcoT22I	ATGCAT	1 cut(s)	733
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	36
Esp3I	CGTCTC	2 cut(s)	145, 595
FaeI	CATG	3 cut(s)	40, 598, 781
FaqI	GGGAC	1 cut(s)	83
FatI	CATG	3 cut(s)	36, 594, 777
FauNDI	CATATG	1 cut(s)	668
Fnu4HI	GCNGC	3 cut(s)	126, 447, 555
FokI	GGATG	2 cut(s)	738, 846
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	3 cut(s)	126, 447, 555
FspBI	CTAG	2 cut(s)	560, 806
FspI	TGCGCA	1 cut(s)	824
GlaI	GCGC	4 cut(s)	33, 124, 804, 824
GluI	GCNGC	3 cut(s)	126, 447, 555
HaeII	RGCGCY	1 cut(s)	806
HgaI	GACGC	1 cut(s)	612
HhaI	GCGC	4 cut(s)	34, 125, 805, 825
Hin1II	CATG	3 cut(s)	40, 598, 781
Hin6I	GCGC	4 cut(s)	32, 123, 803, 823
HinP1I	GCGC	4 cut(s)	32, 123, 803, 823
HinfI	GANTC	1 cut(s)	617
HphI	GGTGA	4 cut(s)	16, 263, 380, 667
Hpy166II	GTNNAC	2 cut(s)	354, 404
Hpy188I	TCNGA	1 cut(s)	266
Hpy188III	TCNNGA	3 cut(s)	475, 487, 644
Hpy8I	GTNNAC	2 cut(s)	354, 404
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	205, 292, 576, 624, 807
HpyCH4III	ACNGT	2 cut(s)	197, 503
HpyCH4IV	ACGT	1 cut(s)	350
HpyCH4V	TGCA	6 cut(s)	292, 449, 471, 536, 557, 731
HpyF10VI	GCNNNNNNNGC	5 cut(s)	40, 122, 131, 802, 829
HpyF3I	CTNAG	3 cut(s)	419, 599, 852
HpySE526I	ACGT	1 cut(s)	350
Hsp92II	CATG	3 cut(s)	40, 598, 781
HspAI	GCGC	4 cut(s)	32, 123, 803, 823
Kzo9I	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
LmnI	GCTCC	1 cut(s)	40
Lsp1109I	GCAGC	3 cut(s)	112, 433, 541
LweI	GCATC	5 cut(s)	114, 480, 683, 718, 740
MaeI	CTAG	2 cut(s)	560, 806
MaeII	ACGT	1 cut(s)	350
MaeIII	GTNAC	1 cut(s)	658
MalI	GATC	7 cut(s)	77, 324, 491, 655, 750, 770, 791
MboI	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
MboII	GAAGA	6 cut(s)	100, 317, 334, 361, 646, 850
MfeI	CAATTG	2 cut(s)	61, 255
MflI	RGATCY	3 cut(s)	322, 653, 789
MhlI	GDGCHC	2 cut(s)	45, 189
MluCI	AATT	5 cut(s)	61, 176, 255, 756, 827
MmeI	TCCRAC	3 cut(s)	179, 300, 631
MnlI	CCTC	8 cut(s)	37, 58, 65, 146, 154, 494, 572, 640
Mph1103I	ATGCAT	1 cut(s)	733
MseI	TTAA	1 cut(s)	240
MspR9I	CCNGG	2 cut(s)	330, 392
MunI	CAATTG	2 cut(s)	61, 255
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	330, 392
MvnI	CGCG	1 cut(s)	32
MwoI	GCNNNNNNNGC	5 cut(s)	40, 122, 131, 802, 829
NcoI	CCATGG	1 cut(s)	36
NdeI	CATATG	1 cut(s)	668
NdeII	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
NlaIII	CATG	3 cut(s)	40, 598, 781
NsbI	TGCGCA	1 cut(s)	824
NsiI	ATGCAT	1 cut(s)	733
NspI	RCATGY	1 cut(s)	781
PaqCI	CACCTGC	1 cut(s)	686
PcsI	WCGNNNNNNNCGW	2 cut(s)	78, 144
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	1 cut(s)	617
PflMI	CCANNNNNTGG	1 cut(s)	66
PfoI	TCCNGGA	1 cut(s)	328
PkrI	GCNGC	3 cut(s)	127, 448, 556
Ppu21I	YACGTR	1 cut(s)	351
Psp124BI	GAGCTC	1 cut(s)	45
Psp6I	CCWGG	2 cut(s)	328, 390
PspGI	CCWGG	2 cut(s)	328, 390
PspPI	GGNCC	1 cut(s)	201
PsuI	RGATCY	3 cut(s)	322, 653, 789
RsaI	GTAC	4 cut(s)	249, 303, 353, 455
RsaNI	GTAC	4 cut(s)	248, 302, 352, 454
SacI	GAGCTC	1 cut(s)	45
SaqAI	TTAA	1 cut(s)	240
SatI	GCNGC	3 cut(s)	126, 447, 555
Sau3AI	GATC	7 cut(s)	75, 322, 489, 653, 748, 768, 789
Sau96I	GGNCC	1 cut(s)	201
ScrFI	CCNGG	2 cut(s)	330, 392
SduI	GDGCHC	2 cut(s)	45, 189
SfaNI	GCATC	5 cut(s)	114, 480, 683, 718, 740
SinI	GGWCC	1 cut(s)	201
SnaBI	TACGTA	1 cut(s)	351
Sse9I	AATT	5 cut(s)	61, 176, 255, 756, 827
SsiI	CCGC	1 cut(s)	30
SspI	AATATT	1 cut(s)	309
SspMI	CTAG	2 cut(s)	560, 806
SstI	GAGCTC	1 cut(s)	45
StyD4I	CCNGG	2 cut(s)	328, 390
StyI	CCWWGG	1 cut(s)	36
TaaI	ACNGT	2 cut(s)	197, 503
TaiI	ACGT	1 cut(s)	353
TaqI	TCGA	1 cut(s)	492
TasI	AATT	5 cut(s)	61, 176, 255, 756, 827
TatI	WGTACW	1 cut(s)	453
TfiI	GAWTC	1 cut(s)	617
Tru1I	TTAA	1 cut(s)	240
Tru9I	TTAA	1 cut(s)	240
TscAI	CASTG	1 cut(s)	508
TseI	GCWGC	3 cut(s)	125, 446, 554
TspDTI	ATGAA	6 cut(s)	209, 223, 242, 505, 520, 583
TspGWI	ACGGA	3 cut(s)	136, 591, 857
TspRI	CASTG	1 cut(s)	508
Van91I	CCANNNNNTGG	1 cut(s)	66
VpaK11BI	GGWCC	1 cut(s)	201
XceI	RCATGY	1 cut(s)	781
XspI	CTAG	2 cut(s)	560, 806
Zsp2I	ATGCAT	1 cut(s)	733

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.