FvH4_3g02360

Tobamovirus multiplication protein 1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012412
Physical Location & Seq
Reverse (-)
1195454 .. 1199552
4099 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g02360.t1

Sequence Viewer

Length: 876 bp
ATGACGAGAATGCCACCGCTGGTGCTGAGCTCGGCGCCGATGGAGGTCGCGGCGTTGGTGCTTAGCTGGTGGGACGATATTAACGAGTCGACTCAGTGGCAGGACGGCATCTTCTACTTCCTCTGCGCCGCCTACGCTCTCGTCTCCTCCGTCGCTCTGTTTCAACTAATAAGGATTGAATTGAGAGTGCCGGAATACGGTTGGACTACGCAGAAGGTGTTCCATCTTATGAATTTTATTGTCAATGGAGTGCGCGCAATTGTGTTTGGATTTCACACACAAGTGTTTCTATTGCAACCCAGGGTATTAATATTGGTCTTGTTGGATCTTCCTGGACTGCTGTTCTTCTCAACGTACACACTTCTTGTCCTCTTTTGGGCAGAGATATATCACCAGGCAAGAAGTTTACCAACAGATAAGCTCAGGATTGTTTATATTTCAGTCAATGCTGGAATGTACTTCGTACAGATTTGCCTCTGGATATACCTCTGGTTTGATGACAACAGCGTTGTGGAGTTCATTGGAAAGATATTTATTGCAGCTGTTTCATTTGTGGCTGCACTAGGTTTCTTAGTCTATGGAGGAAGGTTATTTTTCATGCTGAGACGTTTCCCAATTGAATCTAAAGGGAGAAGGAAGAAACTTCATGAGGTTGGATCTGTTACAGCCATATGTTTCACCTGCTTTCTCATAAGATGCTTTGTGGATGTGTTGTCCGCTGTCGATGAAGATGCAACACTTGATGTTTTGGATCATCCTATTTTGAATGTGATATACTACATGCTGGTTGAGATCCTGCCCTCAGCCTTGGTCCTCTATATCTTGCGCAAATTGCCTCCCAAGAGGGTATCAGCTCAGTATCATCCAATACGTTAG

Protein Analysis

292

Amino Acids

33.52

Weight (kDa)

8.24

Isoelectric Point (pI)

38.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
THH1_TOM1-3_dom PF06454 22 - 291 9.2e-141 THH1/TOM1/TOM3 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G21790
fragaria_vesca FvH4_3g02360 FvH4_3g02360
malus_domestica MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica Prupe.4G023400_v2.0.a1
pyrus_communis pycom05g31290
rosa_chinensis RchiOBHm_Chr5g0003581
rosa_laevigata RLG00000031154
rosa_multiflora Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii Rroxscaffold_1G00072380
rosa_rugosa Rorug04G0404700 Rorug04G0404800
rosa_samantha Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana Rw5G002940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 689
Acc16I TGCGCA 1 cut(s) 827
Acc36I ACCTGC 1 cut(s) 689
AccB1I GGYRCC 1 cut(s) 34
AccI GTMKAC 1 cut(s) 89
AccII CGCG 2 cut(s) 50, 255
AciI CCGC 4 cut(s) 17, 50, 129, 717
AclWI GGATC 4 cut(s) 333, 664, 759, 787
AcsI RAATTY 1 cut(s) 232
AcyI GRCGYC 1 cut(s) 35
AfaI GTAC 3 cut(s) 356, 458, 465
AfiI CCNNNNNNNGG 2 cut(s) 197, 376
AgsI TTSAA 4 cut(s) 164, 179, 620, 766
AjnI CCWGG 3 cut(s) 299, 331, 393
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 5 cut(s) 30, 66, 421, 542, 854
AluI AGCT 5 cut(s) 30, 66, 421, 542, 854
Alw21I GWGCWC 1 cut(s) 32
Alw26I GTCTC 2 cut(s) 148, 598
AlwI GGATC 4 cut(s) 333, 664, 759, 787
ApeKI GCWGC 2 cut(s) 539, 557
ApoI RAATTY 1 cut(s) 232
AseI ATTAAT 1 cut(s) 308
Asp700I GAANNNNTTC 1 cut(s) 218
AspLEI GCGC 5 cut(s) 37, 128, 255, 257, 828
AspS9I GGNCC 1 cut(s) 811
AsuHPI GGTGA 2 cut(s) 383, 670
AvaII GGWCC 1 cut(s) 811
BanI GGYRCC 1 cut(s) 34
BanII GRGCYC 1 cut(s) 32
Bbv12I GWGCWC 1 cut(s) 32
BbvCI CCTCAGC 1 cut(s) 802
BbvI GCAGC 2 cut(s) 544, 551
BccI CCATC 2 cut(s) 34, 231
BceAI ACGGC 1 cut(s) 121
BcgI CGANNNNNNTGC 2 cut(s) 713, 747
BciT130I CCWGG 3 cut(s) 301, 333, 395
BcoDI GTCTC 2 cut(s) 148, 598
BfaI CTAG 1 cut(s) 563
BfoI RGCGCY 1 cut(s) 38
BfuAI ACCTGC 1 cut(s) 689
BisI GCNGC 4 cut(s) 51, 129, 540, 558
BlpI GCTNAGC 2 cut(s) 26, 62
BlsI GCNGC 4 cut(s) 52, 130, 541, 559
Bme1390I CCNGG 3 cut(s) 301, 333, 395
Bme18I GGWCC 1 cut(s) 811
BmgT120I GGNCC 1 cut(s) 811
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 3 cut(s) 301, 333, 395
BmsI GCATC 3 cut(s) 117, 686, 721
Bpu10I CCTNAGC 2 cut(s) 422, 802
Bpu1102I GCTNAGC 2 cut(s) 26, 62
BsaHI GRCGYC 1 cut(s) 35
BsaJI CCNNGG 3 cut(s) 299, 300, 807
Bsc4I CCNNNNNNNGG 2 cut(s) 197, 376
BseBI CCWGG 3 cut(s) 301, 333, 395
BseDI CCNNGG 3 cut(s) 299, 300, 807
BseGI GGATG 3 cut(s) 712, 754, 862
BseLI CCNNNNNNNGG 2 cut(s) 197, 376
BseMII CTCAG 6 cut(s) 17, 107, 436, 593, 816, 869
BsePI GCGCGC 1 cut(s) 253
BseRI GAGGAG 1 cut(s) 136
BseXI GCAGC 2 cut(s) 544, 551
BsgI GTGCAG 1 cut(s) 543
Bsh1236I CGCG 2 cut(s) 50, 255
BshNI GGYRCC 1 cut(s) 34
BsiHKAI GWGCWC 1 cut(s) 32
BsiSI CCGG 1 cut(s) 191
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 197, 376
BsmAI GTCTC 2 cut(s) 148, 598
BsmBI CGTCTC 2 cut(s) 148, 598
BsmFI GGGAC 1 cut(s) 86
BsmI GAATGC 1 cut(s) 15
Bsp1286I GDGCHC 1 cut(s) 32
Bsp143I GATC 4 cut(s) 325, 656, 751, 792
Bsp1720I GCTNAGC 2 cut(s) 26, 62
BspACI CCGC 4 cut(s) 17, 50, 129, 717
BspCNI CTCAG 6 cut(s) 18, 106, 435, 594, 815, 868
BspFNI CGCG 2 cut(s) 50, 255
BspHI TCATGA 1 cut(s) 646
BspLI GGNNCC 1 cut(s) 36
BspMI ACCTGC 1 cut(s) 689
BspPI GGATC 4 cut(s) 333, 664, 759, 787
BspT107I GGYRCC 1 cut(s) 34
BssECI CCNNGG 3 cut(s) 299, 300, 807
BssHII GCGCGC 1 cut(s) 253
BssMI GATC 4 cut(s) 325, 656, 751, 792
BssNI GRCGYC 1 cut(s) 35
BssT1I CCWWGG 1 cut(s) 807
Bst2UI CCWGG 3 cut(s) 301, 333, 395
Bst4CI ACNGT 1 cut(s) 200
BstACI GRCGYC 1 cut(s) 35
BstC8I GCNNGC 1 cut(s) 255
BstDEI CTNAG 8 cut(s) 26, 62, 93, 422, 571, 602, 802, 855
BstF5I GGATG 3 cut(s) 712, 754, 862
BstFNI CGCG 2 cut(s) 50, 255
BstH2I RGCGCY 1 cut(s) 38
BstHHI GCGC 5 cut(s) 37, 128, 255, 257, 828
BstKTI GATC 4 cut(s) 328, 659, 754, 795
BstMAI GTCTC 2 cut(s) 148, 598
BstMBI GATC 4 cut(s) 325, 656, 751, 792
BstMWI GCNNNNNNNGC 2 cut(s) 134, 832
BstNI CCWGG 3 cut(s) 301, 333, 395
BstNSI RCATGY 1 cut(s) 784
BstSCI CCNGG 3 cut(s) 299, 331, 393
BstUI CGCG 2 cut(s) 50, 255
BstV1I GCAGC 2 cut(s) 544, 551
BstX2I RGATCY 3 cut(s) 325, 656, 792
BstYI RGATCY 3 cut(s) 325, 656, 792
BtsCI GGATG 3 cut(s) 712, 754, 862
BtsIMutI CAGTG 1 cut(s) 101
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 255
CciI TCATGA 1 cut(s) 646
CfoI GCGC 5 cut(s) 37, 128, 255, 257, 828
Cfr13I GGNCC 1 cut(s) 811
Csp6I GTAC 3 cut(s) 355, 457, 464
CviAII CATG 3 cut(s) 598, 647, 781
CviJI RGCY 8 cut(s) 30, 66, 421, 542, 557, 668, 806, 854
CviKI_1 RGCY 8 cut(s) 30, 66, 421, 542, 557, 668, 806, 854
CviQI GTAC 3 cut(s) 355, 457, 464
DdeI CTNAG 8 cut(s) 26, 62, 93, 422, 571, 602, 802, 855
DinI GGCGCC 1 cut(s) 36
DpnI GATC 4 cut(s) 327, 658, 753, 794
DpnII GATC 4 cut(s) 325, 656, 751, 792
Ecl136II GAGCTC 1 cut(s) 30
Eco130I CCWWGG 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 32
Eco47I GGWCC 1 cut(s) 811
Eco53kI GAGCTC 1 cut(s) 30
EcoICRI GAGCTC 1 cut(s) 30
EcoRII CCWGG 3 cut(s) 299, 331, 393
EcoT14I CCWWGG 1 cut(s) 807
EcoT38I GRGCYC 1 cut(s) 32
EgeI GGCGCC 1 cut(s) 36
EheI GGCGCC 1 cut(s) 36
ErhI CCWWGG 1 cut(s) 807
Esp3I CGTCTC 2 cut(s) 148, 598
FaeI CATG 3 cut(s) 601, 650, 784
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 597, 646, 780
FauNDI CATATG 1 cut(s) 671
FblI GTMKAC 1 cut(s) 89
Fnu4HI GCNGC 4 cut(s) 51, 129, 540, 558
FokI GGATG 3 cut(s) 719, 741, 849
FriOI GRGCYC 1 cut(s) 32
Fsp4HI GCNGC 4 cut(s) 51, 129, 540, 558
FspBI CTAG 1 cut(s) 563
FspI TGCGCA 1 cut(s) 827
GlaI GCGC 5 cut(s) 36, 127, 254, 256, 827
GluI GCNGC 4 cut(s) 51, 129, 540, 558
HaeII RGCGCY 1 cut(s) 38
HapII CCGG 1 cut(s) 191
HhaI GCGC 5 cut(s) 37, 128, 255, 257, 828
Hin1I GRCGYC 1 cut(s) 35
Hin1II CATG 3 cut(s) 601, 650, 784
Hin6I GCGC 5 cut(s) 35, 126, 253, 255, 826
HinP1I GCGC 5 cut(s) 35, 126, 253, 255, 826
HincII GTYRAC 1 cut(s) 90
HindII GTYRAC 1 cut(s) 90
HinfI GANTC 3 cut(s) 86, 91, 620
HpaII CCGG 1 cut(s) 191
HphI GGTGA 2 cut(s) 383, 670
Hpy166II GTNNAC 3 cut(s) 90, 357, 407
Hpy188III TCNNGA 3 cut(s) 424, 478, 647
Hpy8I GTNNAC 3 cut(s) 90, 357, 407
Hpy99I CGWCG 1 cut(s) 155
HpyAV CCTTC 3 cut(s) 208, 579, 627
HpyCH4III ACNGT 1 cut(s) 200
HpyCH4IV ACGT 3 cut(s) 353, 607, 871
HpyCH4V TGCA 4 cut(s) 295, 539, 560, 734
HpyF10VI GCNNNNNNNGC 2 cut(s) 134, 832
HpyF3I CTNAG 8 cut(s) 26, 62, 93, 422, 571, 602, 802, 855
HpySE526I ACGT 3 cut(s) 353, 607, 871
Hsp92I GRCGYC 1 cut(s) 35
Hsp92II CATG 3 cut(s) 601, 650, 784
HspAI GCGC 5 cut(s) 35, 126, 253, 255, 826
KasI GGCGCC 1 cut(s) 34
Kzo9I GATC 4 cut(s) 325, 656, 751, 792
Lsp1109I GCAGC 2 cut(s) 544, 551
LweI GCATC 3 cut(s) 117, 686, 721
MaeI CTAG 1 cut(s) 563
MaeII ACGT 3 cut(s) 353, 607, 871
MaeIII GTNAC 1 cut(s) 661
MalI GATC 4 cut(s) 327, 658, 753, 794
MboI GATC 4 cut(s) 325, 656, 751, 792
MboII GAAGA 5 cut(s) 103, 320, 337, 649, 740
MfeI CAATTG 2 cut(s) 258, 615
MflI RGATCY 3 cut(s) 325, 656, 792
MhlI GDGCHC 1 cut(s) 32
MluCI AATT 5 cut(s) 179, 232, 258, 615, 830
Mly113I GGCGCC 1 cut(s) 35
MlyI GAGTC 2 cut(s) 85, 95
MmeI TCCRAC 3 cut(s) 182, 303, 634
MroXI GAANNNNTTC 1 cut(s) 218
MseI TTAA 2 cut(s) 81, 308
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 3 cut(s) 19, 542, 719
MspI CCGG 1 cut(s) 191
MspR9I CCNGG 3 cut(s) 301, 333, 395
MunI CAATTG 2 cut(s) 258, 615
Mva1269I GAATGC 1 cut(s) 15
MvaI CCWGG 3 cut(s) 301, 333, 395
MvnI CGCG 2 cut(s) 50, 255
MwoI GCNNNNNNNGC 2 cut(s) 134, 832
NarI GGCGCC 1 cut(s) 35
NdeI CATATG 1 cut(s) 671
NdeII GATC 4 cut(s) 325, 656, 751, 792
NlaIII CATG 3 cut(s) 601, 650, 784
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 1 cut(s) 11
NsbI TGCGCA 1 cut(s) 827
NspI RCATGY 1 cut(s) 784
OliI CACNNNNGTG 1 cut(s) 281
PagI TCATGA 1 cut(s) 646
PaqCI CACCTGC 1 cut(s) 689
PasI CCCWGGG 1 cut(s) 300
PauI GCGCGC 1 cut(s) 253
PcsI WCGNNNNNNNCGW 2 cut(s) 81, 147
PctI GAATGC 1 cut(s) 15
PdmI GAANNNNTTC 1 cut(s) 218
PfeI GAWTC 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 331
PkrI GCNGC 4 cut(s) 52, 130, 541, 559
PleI GAGTC 2 cut(s) 85, 94
PluTI GGCGCC 1 cut(s) 38
PpsI GAGTC 2 cut(s) 85, 94
PshBI ATTAAT 1 cut(s) 308
Psp124BI GAGCTC 1 cut(s) 32
Psp6I CCWGG 3 cut(s) 299, 331, 393
PspGI CCWGG 3 cut(s) 299, 331, 393
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 811
PsuI RGATCY 3 cut(s) 325, 656, 792
PteI GCGCGC 1 cut(s) 253
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 3 cut(s) 356, 458, 465
RsaNI GTAC 3 cut(s) 355, 457, 464
RseI CAYNNNNRTG 1 cut(s) 281
SacI GAGCTC 1 cut(s) 32
SalI GTCGAC 1 cut(s) 88
SaqAI TTAA 2 cut(s) 81, 308
SatI GCNGC 4 cut(s) 51, 129, 540, 558
Sau3AI GATC 4 cut(s) 325, 656, 751, 792
Sau96I GGNCC 1 cut(s) 811
SchI GAGTC 2 cut(s) 85, 95
ScrFI CCNGG 3 cut(s) 301, 333, 395
SduI GDGCHC 1 cut(s) 32
SfaNI GCATC 3 cut(s) 117, 686, 721
SfoI GGCGCC 1 cut(s) 36
SinI GGWCC 1 cut(s) 811
SmiMI CAYNNNNRTG 1 cut(s) 281
Sse9I AATT 5 cut(s) 179, 232, 258, 615, 830
SsiI CCGC 4 cut(s) 17, 50, 129, 717
SspDI GGCGCC 1 cut(s) 34
SspI AATATT 1 cut(s) 312
SspMI CTAG 1 cut(s) 563
SstI GAGCTC 1 cut(s) 32
StyD4I CCNGG 3 cut(s) 299, 331, 393
StyI CCWWGG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 200
TaiI ACGT 3 cut(s) 356, 610, 874
TaqI TCGA 2 cut(s) 89, 723
TasI AATT 5 cut(s) 179, 232, 258, 615, 830
TatI WGTACW 1 cut(s) 456
TauI GCSGC 2 cut(s) 53, 131
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 2 cut(s) 81, 308
Tru9I TTAA 2 cut(s) 81, 308
TscAI CASTG 1 cut(s) 101
TseI GCWGC 2 cut(s) 539, 557
TspDTI ATGAA 6 cut(s) 245, 508, 537, 586, 635, 741
TspGWI ACGGA 1 cut(s) 139
TspRI CASTG 1 cut(s) 101
VpaK11BI GGWCC 1 cut(s) 811
VspI ATTAAT 1 cut(s) 308
XapI RAATTY 1 cut(s) 232
XceI RCATGY 1 cut(s) 784
XmiI GTMKAC 1 cut(s) 89
XmnI GAANNNNTTC 1 cut(s) 218
XspI CTAG 1 cut(s) 563
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.