Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012412

Physical Location & Seq

Genomic Coordinates Forward (+)

40115829 .. 40119805

Gene Structure 3977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1318600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGACGAGAATGCCACTGCCATTATTGAGCTCTGCGCCCATGGAGGTCGTCTCCATGTTCTTCGGCTGGTGGGACGAGATCAACGAGTCCTCCCGGTGGCAGGACGGCATCTTCTACGCTCTCAGCGCCGCCTACGCCCTCGTCTCCTCCGTCGCTCTGATTCAACTAATAAGGATTGAATTGAGAGTGCCAGAATACGGGTGGACGACGCAGAAGGTTTTTCATCTTATGAACTTCATCGTTAACGGAGTACGAGCAGTTGTTTTCGGATTTCACGGCCAAGTGTTTAGTTTGCACCCCAAGGTACTAATATTGGTCTTGTTGGATCTTCCTGGACTGCTATTTTTCTCTACGTACACGCTTCTTGTCCTATTTTGGGCGGAGATATATCACCAGGCGAGAAGTTTACCAACAGATAAGCTGAGGATTGTTTATATATCGGTCAATGCTGTTATGTACTTTATACAGGTTTGCATCTGGGTATACCTCTGGATAGACGACAACAGTATTGTGGAGTTCATTGGAAAGATATTTGTTGCAGCCATGTCATTTGTGGCTGCACTAGGCTTCTTGATATACGGAGGAAGGTTATTTTTCATGTTGAGGCGCTTCCCCATTGAATCCAAAGGGAGAAGGAAGAAACTTCATGAGGTTGGCTCCGTTACAGGCATATGTTTCACCTGCTTTCTCATAAGATGCTTGGTGGTTGTCATATCAGCTTTCGATACAGACTTGTCACTTGATGTTTTGGATCACCCGGTTTTGAATGTTATCTACTACATGCTGGTTGAGATCCTGCCTTCAGCACTAGTCCTTTACATCTTGCGCAAATTGCCCCCCAAGAGAGTATCGGCTCAGTATCATCCGATCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

292

Amino Acids

33.46

Weight (kDa)

9.0

Isoelectric Point (pI)

41.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	22 - 291	7e-142	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21790
fragaria_vesca	FvH4_3g02360 FvH4_3g02360
malus_domestica	MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica	Prupe.4G023400_v2.0.a1
pyrus_communis	pycom05g31290
rosa_chinensis	RchiOBHm_Chr5g0003581
rosa_laevigata	RLG00000031154
rosa_multiflora	Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072380
rosa_rugosa	Rorug04G0404700 Rorug04G0404800
rosa_samantha	Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana	Rw5G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	689
Acc16I	TGCGCA	1 cut(s)	827
Acc36I	ACCTGC	1 cut(s)	689
AccI	GTMKAC	1 cut(s)	483
AciI	CCGC	2 cut(s)	129, 380
AclWI	GGATC	4 cut(s)	333, 759, 787, 862
AcoI	YGGCCR	1 cut(s)	277
AcuI	CTGAAG	1 cut(s)	786
AfaI	GTAC	4 cut(s)	252, 306, 356, 458
AfiI	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
AgsI	TTSAA	4 cut(s)	164, 179, 620, 766
AhlI	ACTAGT	1 cut(s)	808
AjnI	CCWGG	2 cut(s)	331, 393
AluBI	AGCT	3 cut(s)	30, 421, 719
AluI	AGCT	3 cut(s)	30, 421, 719
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	55, 148
AlwI	GGATC	4 cut(s)	333, 759, 787, 862
AoxI	GGCC	1 cut(s)	277
ApeKI	GCWGC	2 cut(s)	539, 557
AspLEI	GCGC	4 cut(s)	37, 128, 609, 828
AsuC2I	CCSGG	2 cut(s)	94, 758
AsuHPI	GGTGA	3 cut(s)	383, 670, 746
BanII	GRGCYC	1 cut(s)	32
Bbv12I	GWGCWC	1 cut(s)	32
BbvCI	CCTCAGC	1 cut(s)	422
BbvI	GCAGC	2 cut(s)	544, 551
BceAI	ACGGC	2 cut(s)	121, 292
BciT130I	CCWGG	2 cut(s)	333, 395
BcnI	CCSGG	2 cut(s)	94, 758
BcoDI	GTCTC	2 cut(s)	55, 148
BcuI	ACTAGT	1 cut(s)	808
BfaI	CTAG	2 cut(s)	563, 809
BfoI	RGCGCY	2 cut(s)	129, 610
BfuAI	ACCTGC	1 cut(s)	689
BisI	GCNGC	3 cut(s)	129, 540, 558
BlsI	GCNGC	3 cut(s)	130, 541, 559
Bme1390I	CCNGG	4 cut(s)	94, 333, 395, 758
BmiI	GGNNCC	1 cut(s)	658
BmrFI	CCNGG	4 cut(s)	94, 333, 395, 758
BmsI	GCATC	3 cut(s)	117, 483, 686
BplI	GAGNNNNNCTC	4 cut(s)	35, 67, 641, 673
Bpu10I	CCTNAGC	1 cut(s)	422
BpuMI	CCSGG	2 cut(s)	94, 758
BsaAI	YACGTR	1 cut(s)	354
BsaJI	CCNNGG	2 cut(s)	39, 300
BsaXI	ACNNNNNCTCC	2 cut(s)	74, 104
Bsc4I	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
BseBI	CCWGG	2 cut(s)	333, 395
BseDI	CCNNGG	2 cut(s)	39, 300
BseGI	GGATG	1 cut(s)	862
BseLI	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
BseMII	CTCAG	3 cut(s)	136, 413, 869
BseRI	GAGGAG	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	544, 551
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	279
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	2 cut(s)	94, 758
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	4 cut(s)	96, 100, 197, 376
BsmAI	GTCTC	2 cut(s)	55, 148
BsmBI	CGTCTC	2 cut(s)	55, 148
BsmFI	GGGAC	1 cut(s)	86
BsmI	GAATGC	1 cut(s)	15
BsnI	GGCC	1 cut(s)	279
Bsp1286I	GDGCHC	1 cut(s)	32
Bsp143I	GATC	5 cut(s)	78, 325, 751, 792, 867
Bsp19I	CCATGG	1 cut(s)	39
BspACI	CCGC	2 cut(s)	129, 380
BspANI	GGCC	1 cut(s)	279
BspCNI	CTCAG	3 cut(s)	135, 414, 868
BspHI	TCATGA	1 cut(s)	646
BspLI	GGNNCC	1 cut(s)	658
BspMI	ACCTGC	1 cut(s)	689
BspPI	GGATC	4 cut(s)	333, 759, 787, 862
BssECI	CCNNGG	2 cut(s)	39, 300
BssMI	GATC	5 cut(s)	78, 325, 751, 792, 867
BssNAI	GTATAC	1 cut(s)	484
BssT1I	CCWWGG	2 cut(s)	39, 300
Bst1107I	GTATAC	1 cut(s)	484
Bst2UI	CCWGG	2 cut(s)	333, 395
Bst4CI	ACNGT	1 cut(s)	506
BstBAI	YACGTR	1 cut(s)	354
BstDEI	CTNAG	3 cut(s)	122, 422, 855
BstDSI	CCRYGG	1 cut(s)	39
BstF5I	GGATG	1 cut(s)	862
BstH2I	RGCGCY	2 cut(s)	129, 610
BstHHI	GCGC	4 cut(s)	37, 128, 609, 828
BstKTI	GATC	5 cut(s)	81, 328, 754, 795, 870
BstMAI	GTCTC	2 cut(s)	55, 148
BstMBI	GATC	5 cut(s)	78, 325, 751, 792, 867
BstMWI	GCNNNNNNNGC	3 cut(s)	125, 134, 832
BstNI	CCWGG	2 cut(s)	333, 395
BstNSI	RCATGY	1 cut(s)	784
BstSCI	CCNGG	4 cut(s)	92, 331, 393, 756
BstSNI	TACGTA	1 cut(s)	354
BstV1I	GCAGC	2 cut(s)	544, 551
BstX2I	RGATCY	2 cut(s)	325, 792
BstYI	RGATCY	2 cut(s)	325, 792
BstZ17I	GTATAC	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	279
BtgI	CCRYGG	1 cut(s)	39
BtsCI	GGATG	1 cut(s)	862
BtsI	GCAGTG	1 cut(s)	14
BtsIMutI	CAGTG	1 cut(s)	14
BveI	ACCTGC	1 cut(s)	689
CciI	TCATGA	1 cut(s)	646
CfoI	GCGC	4 cut(s)	37, 128, 609, 828
CseI	GACGC	1 cut(s)	217
Csp6I	GTAC	4 cut(s)	251, 305, 355, 457
CviAII	CATG	6 cut(s)	40, 55, 544, 598, 647, 781
CviQI	GTAC	4 cut(s)	251, 305, 355, 457
DdeI	CTNAG	3 cut(s)	122, 422, 855
DpnI	GATC	5 cut(s)	80, 327, 753, 794, 869
DpnII	GATC	5 cut(s)	78, 325, 751, 792, 867
EaeI	YGGCCR	1 cut(s)	277
EciI	GGCGGA	1 cut(s)	395
Ecl136II	GAGCTC	1 cut(s)	30
Eco105I	TACGTA	1 cut(s)	354
Eco130I	CCWWGG	2 cut(s)	39, 300
Eco24I	GRGCYC	1 cut(s)	32
Eco53kI	GAGCTC	1 cut(s)	30
Eco57I	CTGAAG	1 cut(s)	786
EcoICRI	GAGCTC	1 cut(s)	30
EcoRII	CCWGG	2 cut(s)	331, 393
EcoT14I	CCWWGG	2 cut(s)	39, 300
EcoT38I	GRGCYC	1 cut(s)	32
ErhI	CCWWGG	2 cut(s)	39, 300
Esp3I	CGTCTC	2 cut(s)	55, 148
FaeI	CATG	6 cut(s)	43, 58, 547, 601, 650, 784
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	6 cut(s)	39, 54, 543, 597, 646, 780
FauNDI	CATATG	1 cut(s)	671
FblI	GTMKAC	1 cut(s)	483
Fnu4HI	GCNGC	3 cut(s)	129, 540, 558
FokI	GGATG	1 cut(s)	849
FriOI	GRGCYC	1 cut(s)	32
Fsp4HI	GCNGC	3 cut(s)	129, 540, 558
FspBI	CTAG	2 cut(s)	563, 809
FspI	TGCGCA	1 cut(s)	827
GlaI	GCGC	4 cut(s)	36, 127, 608, 827
GluI	GCNGC	3 cut(s)	129, 540, 558
HaeII	RGCGCY	2 cut(s)	129, 610
HaeIII	GGCC	1 cut(s)	279
HapII	CCGG	2 cut(s)	94, 758
HgaI	GACGC	1 cut(s)	217
HhaI	GCGC	4 cut(s)	37, 128, 609, 828
Hin1II	CATG	6 cut(s)	43, 58, 547, 601, 650, 784
Hin6I	GCGC	4 cut(s)	35, 126, 607, 826
HinP1I	GCGC	4 cut(s)	35, 126, 607, 826
HincII	GTYRAC	1 cut(s)	244
HindII	GTYRAC	1 cut(s)	244
HinfI	GANTC	3 cut(s)	86, 160, 620
HpaI	GTTAAC	1 cut(s)	244
HpaII	CCGG	2 cut(s)	94, 758
HphI	GGTGA	3 cut(s)	383, 670, 746
Hpy166II	GTNNAC	5 cut(s)	204, 244, 357, 407, 484
Hpy188I	TCNGA	3 cut(s)	159, 269, 867
Hpy188III	TCNNGA	3 cut(s)	490, 571, 647
Hpy8I	GTNNAC	5 cut(s)	204, 244, 357, 407, 484
Hpy99I	CGWCG	2 cut(s)	155, 211
HpyAV	CCTTC	4 cut(s)	208, 579, 627, 810
HpyCH4III	ACNGT	1 cut(s)	506
HpyCH4IV	ACGT	1 cut(s)	353
HpyCH4V	TGCA	4 cut(s)	295, 474, 539, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	125, 134, 832
HpyF3I	CTNAG	3 cut(s)	122, 422, 855
HpySE526I	ACGT	1 cut(s)	353
Hsp92II	CATG	6 cut(s)	43, 58, 547, 601, 650, 784
HspAI	GCGC	4 cut(s)	35, 126, 607, 826
KspAI	GTTAAC	1 cut(s)	244
Kzo9I	GATC	5 cut(s)	78, 325, 751, 792, 867
LmnI	GCTCC	1 cut(s)	662
Lsp1109I	GCAGC	2 cut(s)	544, 551
LweI	GCATC	3 cut(s)	117, 483, 686
MaeI	CTAG	2 cut(s)	563, 809
MaeII	ACGT	1 cut(s)	353
MaeIII	GTNAC	2 cut(s)	661, 735
MalI	GATC	5 cut(s)	80, 327, 753, 794, 869
MboI	GATC	5 cut(s)	78, 325, 751, 792, 867
MboII	GAAGA	4 cut(s)	52, 103, 320, 649
MflI	RGATCY	2 cut(s)	325, 792
MhlI	GDGCHC	1 cut(s)	32
MluCI	AATT	2 cut(s)	179, 830
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	9 cut(s)	37, 100, 149, 157, 417, 497, 575, 597, 643
MseI	TTAA	1 cut(s)	243
MspI	CCGG	2 cut(s)	94, 758
MspR9I	CCNGG	4 cut(s)	94, 333, 395, 758
Mva1269I	GAATGC	1 cut(s)	15
MvaI	CCWGG	2 cut(s)	333, 395
MwoI	GCNNNNNNNGC	3 cut(s)	125, 134, 832
NciI	CCSGG	2 cut(s)	94, 758
NcoI	CCATGG	1 cut(s)	39
NdeI	CATATG	1 cut(s)	671
NdeII	GATC	5 cut(s)	78, 325, 751, 792, 867
NlaIII	CATG	6 cut(s)	43, 58, 547, 601, 650, 784
NlaIV	GGNNCC	1 cut(s)	658
NmuCI	GTSAC	1 cut(s)	735
NsbI	TGCGCA	1 cut(s)	827
NspI	RCATGY	1 cut(s)	784
PagI	TCATGA	1 cut(s)	646
PaqCI	CACCTGC	1 cut(s)	689
PcsI	WCGNNNNNNNCGW	2 cut(s)	81, 147
PctI	GAATGC	1 cut(s)	15
PfeI	GAWTC	2 cut(s)	160, 620
PfoI	TCCNGGA	1 cut(s)	331
PkrI	GCNGC	3 cut(s)	130, 541, 559
PleI	GAGTC	1 cut(s)	94
PpsI	GAGTC	1 cut(s)	94
Ppu21I	YACGTR	1 cut(s)	354
Psp124BI	GAGCTC	1 cut(s)	32
Psp6I	CCWGG	2 cut(s)	331, 393
PspGI	CCWGG	2 cut(s)	331, 393
PspN4I	GGNNCC	1 cut(s)	658
PsuI	RGATCY	2 cut(s)	325, 792
RsaI	GTAC	4 cut(s)	252, 306, 356, 458
RsaNI	GTAC	4 cut(s)	251, 305, 355, 457
SacI	GAGCTC	1 cut(s)	32
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	3 cut(s)	129, 540, 558
Sau3AI	GATC	5 cut(s)	78, 325, 751, 792, 867
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	4 cut(s)	94, 333, 395, 758
SduI	GDGCHC	1 cut(s)	32
SfaNI	GCATC	3 cut(s)	117, 483, 686
SnaBI	TACGTA	1 cut(s)	354
SpeI	ACTAGT	1 cut(s)	808
Sse9I	AATT	2 cut(s)	179, 830
SsiI	CCGC	2 cut(s)	129, 380
SspI	AATATT	1 cut(s)	312
SspMI	CTAG	2 cut(s)	563, 809
SstI	GAGCTC	1 cut(s)	32
StyD4I	CCNGG	4 cut(s)	92, 331, 393, 756
StyI	CCWWGG	2 cut(s)	39, 300
TaaI	ACNGT	1 cut(s)	506
TaiI	ACGT	1 cut(s)	356
TaqI	TCGA	1 cut(s)	723
TaqII	GACCGA	1 cut(s)	430
TasI	AATT	2 cut(s)	179, 830
TatI	WGTACW	1 cut(s)	456
TauI	GCSGC	1 cut(s)	131
TfiI	GAWTC	2 cut(s)	160, 620
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	21
TseFI	GTSAC	1 cut(s)	735
TseI	GCWGC	2 cut(s)	539, 557
Tsp45I	GTSAC	1 cut(s)	735
TspDTI	ATGAA	6 cut(s)	212, 226, 245, 508, 586, 635
TspGWI	ACGGA	5 cut(s)	139, 261, 594, 649, 860
TspRI	CASTG	1 cut(s)	21
XceI	RCATGY	1 cut(s)	784
XcmI	CCANNNNNNNNNTGG	2 cut(s)	198, 550
XmiI	GTMKAC	1 cut(s)	483
XspI	CTAG	2 cut(s)	563, 809

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.