Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0012412

Physical Location & Seq

Genomic Coordinates Reverse (-)

56908371 .. 56909094

Gene Structure 724 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0404700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 642 bp

ATGGAGGTATTTTACTATCATCACAGAGCGGTGCAAAAAAGGGTAACCCAGCTCATAGGCTCAGAGGAGGACAAGCTGTTCATCAGATTGAAGTTCTGCAAGTGCAGCGCATGGCACCGTGTGGAAAGCGATCCAATTGTTCATGATTACATTACTAAAATAGCCCAAAGAGAATTTTGGTTAAAGTTTTCTCATTTCAAACACCAATTATCCGACAACTACGATAGTAACAGGGAGTACGAAACGCTCATCTGCGAGTATCTGAGGAGTATGGGTGTGCCGGAAGATGAACATCCTGCTGTTGTTGACAAGCTATTCCGGGTGGTTGAGGCTGCCGTCTCCCCTGTGGACGCTGTTGTAGTGTTTGTGTGGGACGCCATTTACCGCGTCGGAGATGGACATGAACCATATAGGCCCAATGGGATTCCTGCGAGCAGATCATCAATCCAGGGTTTGGAGCAAGTGACACTCGATACTGATACCTCGCTCTCCTGTGCGATTTGTTTGGAGGATTTTGAGCAAGAACCCATTACCCGGTTGCCCTGCAGACACCATTTTCATGTCCATTGCATTGTTCAGTGCCTGGAGATCAACCACACCTGTCCCCTCTGCCGATACCCAATGCCAACAGAAGAAGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

213

Amino Acids

24.89

Weight (kDa)

5.59

Isoelectric Point (pI)

39.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RING_2	PF13639	164 - 205	3.7e-12	Ring finger domain
zf-RING_11	PF17123	165 - 191	5.8e-08	RING-like zinc finger
zf-C3HC4_2	PF13923	165 - 204	4.4e-06	Zinc finger, C3HC4 type (RING finger)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21790
fragaria_vesca	FvH4_3g02360 FvH4_3g02360
malus_domestica	MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica	Prupe.4G023400_v2.0.a1
pyrus_communis	pycom05g31290
rosa_chinensis	RchiOBHm_Chr5g0003581
rosa_laevigata	RLG00000031154
rosa_multiflora	Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072380
rosa_rugosa	Rorug04G0404700 Rorug04G0404800
rosa_samantha	Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana	Rw5G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	114
AccB7I	CCANNNNNTGG	1 cut(s)	454
AccBSI	CCGCTC	1 cut(s)	29
AccII	CGCG	1 cut(s)	387
AciI	CCGC	2 cut(s)	29, 385
AclWI	GGATC	1 cut(s)	125
AcsI	RAATTY	1 cut(s)	173
AcyI	GRCGYC	1 cut(s)	375
AdeI	CACNNNGTG	1 cut(s)	121
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	2 cut(s)	454, 534
AgsI	TTSAA	2 cut(s)	91, 199
AjnI	CCWGG	2 cut(s)	447, 582
AloI	GAACNNNNNNTCC	2 cut(s)	62, 94
AluBI	AGCT	3 cut(s)	52, 76, 313
AluI	AGCT	3 cut(s)	52, 76, 313
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	125
AlwNI	CAGNNNCTG	1 cut(s)	583
AoxI	GGCC	1 cut(s)	413
ApeKI	GCWGC	2 cut(s)	105, 332
ApoI	RAATTY	1 cut(s)	173
AspLEI	GCGC	1 cut(s)	110
AspS9I	GGNCC	1 cut(s)	414
AsuC2I	CCSGG	2 cut(s)	320, 535
BanI	GGYRCC	1 cut(s)	114
BbvI	GCAGC	2 cut(s)	117, 319
BccI	CCATC	1 cut(s)	389
BceAI	ACGGC	1 cut(s)	320
BciT130I	CCWGG	2 cut(s)	449, 584
BcnI	CCSGG	2 cut(s)	320, 535
BcoDI	GTCTC	1 cut(s)	343
BfmI	CTRYAG	1 cut(s)	544
BisI	GCNGC	2 cut(s)	106, 333
BlsI	GCNGC	2 cut(s)	107, 334
Bme1390I	CCNGG	4 cut(s)	320, 449, 535, 584
BmgT120I	GGNCC	1 cut(s)	414
BmiI	GGNNCC	1 cut(s)	116
BmrFI	CCNGG	4 cut(s)	320, 449, 535, 584
BpmI	CTGGAG	1 cut(s)	605
BpuMI	CCSGG	2 cut(s)	320, 535
BsaBI	GATNNNNATC	1 cut(s)	291
BsaHI	GRCGYC	1 cut(s)	375
BsaJI	CCNNGG	1 cut(s)	448
BsaXI	ACNNNNNCTCC	2 cut(s)	259, 289
Bsc4I	CCNNNNNNNGG	2 cut(s)	454, 534
Bse3DI	GCAATG	1 cut(s)	565
Bse8I	GATNNNNATC	1 cut(s)	291
BseBI	CCWGG	2 cut(s)	449, 584
BseDI	CCNNGG	1 cut(s)	448
BseGI	GGATG	1 cut(s)	292
BseJI	GATNNNNATC	1 cut(s)	291
BseLI	CCNNNNNNNGG	2 cut(s)	454, 534
BseMI	GCAATG	1 cut(s)	565
BseMII	CTCAG	2 cut(s)	75, 254
BseRI	GAGGAG	2 cut(s)	80, 280
BseXI	GCAGC	2 cut(s)	117, 319
BseYI	CCCAGC	1 cut(s)	48
BsgI	GTGCAG	1 cut(s)	124
Bsh1236I	CGCG	1 cut(s)	387
BshFI	GGCC	1 cut(s)	415
BshNI	GGYRCC	1 cut(s)	114
BsiSI	CCGG	3 cut(s)	281, 319, 535
BslFI	GGGAC	2 cut(s)	386, 588
BslI	CCNNNNNNNGG	2 cut(s)	454, 534
BsmAI	GTCTC	1 cut(s)	343
BsmBI	CGTCTC	1 cut(s)	343
BsmFI	GGGAC	2 cut(s)	386, 588
BsnI	GGCC	1 cut(s)	415
Bsp143I	GATC	3 cut(s)	130, 437, 588
BspACI	CCGC	2 cut(s)	29, 385
BspANI	GGCC	1 cut(s)	415
BspCNI	CTCAG	2 cut(s)	74, 255
BspFNI	CGCG	1 cut(s)	387
BspHI	TCATGA	1 cut(s)	142
BspLI	GGNNCC	1 cut(s)	116
BspMAI	CTGCAG	1 cut(s)	548
BspPI	GGATC	1 cut(s)	125
BspT107I	GGYRCC	1 cut(s)	114
BsrBI	CCGCTC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	565
BssECI	CCNNGG	1 cut(s)	448
BssMI	GATC	3 cut(s)	130, 437, 588
BssNI	GRCGYC	1 cut(s)	375
Bst2UI	CCWGG	2 cut(s)	449, 584
Bst4CI	ACNGT	1 cut(s)	119
BstACI	GRCGYC	1 cut(s)	375
BstC8I	GCNNGC	1 cut(s)	433
BstDEI	CTNAG	2 cut(s)	61, 263
BstEII	GGTNACC	1 cut(s)	43
BstF5I	GGATG	1 cut(s)	292
BstFNI	CGCG	1 cut(s)	387
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	3 cut(s)	133, 440, 591
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	3 cut(s)	130, 437, 588
BstMWI	GCNNNNNNNGC	1 cut(s)	105
BstNI	CCWGG	2 cut(s)	449, 584
BstPI	GGTNACC	1 cut(s)	43
BstSCI	CCNGG	4 cut(s)	318, 447, 533, 582
BstSFI	CTRYAG	1 cut(s)	544
BstUI	CGCG	1 cut(s)	387
BstV1I	GCAGC	2 cut(s)	117, 319
BsuRI	GGCC	1 cut(s)	415
BtsCI	GGATG	1 cut(s)	292
BtsIMutI	CAGTG	1 cut(s)	584
Cac8I	GCNNGC	1 cut(s)	433
CaiI	CAGNNNCTG	1 cut(s)	583
CciI	TCATGA	1 cut(s)	142
CfoI	GCGC	1 cut(s)	110
Cfr13I	GGNCC	1 cut(s)	414
CseI	GACGC	3 cut(s)	359, 376, 383
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	4 cut(s)	111, 143, 401, 560
CviJI	RGCY	7 cut(s)	52, 60, 76, 164, 313, 332, 415
CviKI_1	RGCY	7 cut(s)	52, 60, 76, 164, 313, 332, 415
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	2 cut(s)	61, 263
DpnI	GATC	3 cut(s)	132, 439, 590
DpnII	GATC	3 cut(s)	130, 437, 588
DraIII	CACNNNGTG	1 cut(s)	121
Eco91I	GGTNACC	1 cut(s)	43
EcoO65I	GGTNACC	1 cut(s)	43
EcoRII	CCWGG	2 cut(s)	447, 582
Esp3I	CGTCTC	1 cut(s)	343
FaeI	CATG	4 cut(s)	114, 146, 404, 563
FaiI	YATR	8 cut(s)	56, 112, 144, 272, 402, 409, 411, 561
FaqI	GGGAC	2 cut(s)	386, 588
FatI	CATG	4 cut(s)	110, 142, 400, 559
Fnu4HI	GCNGC	2 cut(s)	106, 333
FokI	GGATG	1 cut(s)	279
Fsp4HI	GCNGC	2 cut(s)	106, 333
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	2 cut(s)	106, 333
GsaI	CCCAGC	1 cut(s)	52
GsuI	CTGGAG	1 cut(s)	605
HaeIII	GGCC	1 cut(s)	415
HapII	CCGG	3 cut(s)	281, 319, 535
HgaI	GACGC	3 cut(s)	359, 376, 383
HhaI	GCGC	1 cut(s)	110
Hin1I	GRCGYC	1 cut(s)	375
Hin1II	CATG	4 cut(s)	114, 146, 404, 563
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HincII	GTYRAC	1 cut(s)	307
HindII	GTYRAC	1 cut(s)	307
HinfI	GANTC	1 cut(s)	424
HpaII	CCGG	3 cut(s)	281, 319, 535
Hpy166II	GTNNAC	2 cut(s)	307, 349
Hpy188I	TCNGA	5 cut(s)	64, 86, 214, 264, 392
Hpy188III	TCNNGA	1 cut(s)	143
Hpy8I	GTNNAC	2 cut(s)	307, 349
Hpy99I	CGWCG	1 cut(s)	392
HpyCH4III	ACNGT	1 cut(s)	119
HpyCH4V	TGCA	5 cut(s)	34, 99, 105, 546, 570
HpyF10VI	GCNNNNNNNGC	1 cut(s)	105
HpyF3I	CTNAG	2 cut(s)	61, 263
Hsp92I	GRCGYC	1 cut(s)	375
Hsp92II	CATG	4 cut(s)	114, 146, 404, 563
HspAI	GCGC	1 cut(s)	108
Kzo9I	GATC	3 cut(s)	130, 437, 588
LmnI	GCTCC	1 cut(s)	457
Lsp1109I	GCAGC	2 cut(s)	117, 319
MaeIII	GTNAC	3 cut(s)	43, 227, 463
MalI	GATC	3 cut(s)	132, 439, 590
MbiI	CCGCTC	1 cut(s)	29
MboI	GATC	3 cut(s)	130, 437, 588
MboII	GAAGA	1 cut(s)	296
MfeI	CAATTG	1 cut(s)	135
MluCI	AATT	3 cut(s)	135, 173, 206
MmeI	TCCRAC	2 cut(s)	237, 370
MnlI	CCTC	7 cut(s)	58, 61, 258, 322, 493, 502, 617
MseI	TTAA	2 cut(s)	182, 640
MslI	CAYNNNNRTG	1 cut(s)	558
MspI	CCGG	3 cut(s)	281, 319, 535
MspR9I	CCNGG	4 cut(s)	320, 449, 535, 584
MunI	CAATTG	1 cut(s)	135
MvaI	CCWGG	2 cut(s)	449, 584
MvnI	CGCG	1 cut(s)	387
MwoI	GCNNNNNNNGC	1 cut(s)	105
NciI	CCSGG	2 cut(s)	320, 535
NdeII	GATC	3 cut(s)	130, 437, 588
NlaIII	CATG	4 cut(s)	114, 146, 404, 563
NlaIV	GGNNCC	1 cut(s)	116
NmuCI	GTSAC	1 cut(s)	463
PagI	TCATGA	1 cut(s)	142
PfeI	GAWTC	1 cut(s)	424
PflMI	CCANNNNNTGG	1 cut(s)	454
PkrI	GCNGC	2 cut(s)	107, 334
Psp6I	CCWGG	2 cut(s)	447, 582
PspEI	GGTNACC	1 cut(s)	43
PspFI	CCCAGC	1 cut(s)	48
PspGI	CCWGG	2 cut(s)	447, 582
PspN4I	GGNNCC	1 cut(s)	116
PspPI	GGNCC	1 cut(s)	414
PstI	CTGCAG	1 cut(s)	548
PstNI	CAGNNNCTG	1 cut(s)	583
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
RseI	CAYNNNNRTG	1 cut(s)	558
SaqAI	TTAA	2 cut(s)	182, 640
SatI	GCNGC	2 cut(s)	106, 333
Sau3AI	GATC	3 cut(s)	130, 437, 588
Sau96I	GGNCC	1 cut(s)	414
ScrFI	CCNGG	4 cut(s)	320, 449, 535, 584
SetI	ASST	6 cut(s)	9, 54, 78, 315, 485, 602
SfcI	CTRYAG	1 cut(s)	544
SmiMI	CAYNNNNRTG	1 cut(s)	558
Sse9I	AATT	3 cut(s)	135, 173, 206
SsiI	CCGC	2 cut(s)	29, 385
StyD4I	CCNGG	4 cut(s)	318, 447, 533, 582
TaaI	ACNGT	1 cut(s)	119
TaqI	TCGA	1 cut(s)	471
TasI	AATT	3 cut(s)	135, 173, 206
TfiI	GAWTC	1 cut(s)	424
Tru1I	TTAA	2 cut(s)	182, 640
Tru9I	TTAA	2 cut(s)	182, 640
TscAI	CASTG	1 cut(s)	584
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	105, 332
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	5 cut(s)	70, 131, 303, 417, 548
TspRI	CASTG	1 cut(s)	584
Van91I	CCANNNNNTGG	1 cut(s)	454
XapI	RAATTY	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.