Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0012412

Physical Location & Seq

Genomic Coordinates Forward (+)

93461824 .. 93465902

Gene Structure 4079 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00072380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 825 bp

ATGACGAGAATGCCACCGCCTTCGCTGCTGACGTCGGCGCCGATGGAGGCCGTGGCGTTCGTGATGGCCTGGTGGGACGATATCAACGAGTCGACTAGGTGGCAGGACGGCATCTTCTATTCTCTCTGCGCGGCCTATGCCCTCGTCTCCTCCGTCGCTCTGTTTCAGCTAATAAGGATTGAATTGAGAGTGCCGGAGTACGGTTGGACGACGCAGAAGGTGTTTCATCTTATGAATTTCATTGTCAATGGAGTGCGCGCAATTGTCTTTGGATTTCACAAGCAAGTCTTTCTCTTGCAACCAAGGGTGTTGATATTGGTCTTATTGGATCTTCCTGGACTGCTATTCTTCTCAACGTACACACTTCTTGTCCTATTTTGGGCAGAGATATATCACCAGGCGAGAAGTTTACCGACAGATAAGCTCAGGATTGTTTATATTTCAGTCAATGGTGGAATGTACTTCGTACAGATTTGCCTCTGGATATACCTCTGGTTTGATGACAACAGCGTTGTGGAGTTCATTGGAAAGATATTTATTGCAGCTGTGTCATTTGTGGCTGCACTAGGTTTCTTAATTTATGGAGGAAGGTTATTTTTCATGCTGAGACGTTTCCCAATTGAATCTAAAGGGAGAAGGAAGAAACTTCATGAGGATGTGTTGTCCGCTTTTGATGATGATGCATCACTTGATGTTTTGGATCATCCTGTTTTGAATGCATTCTACTACATGCTGGTTGAGATCCTGCCCTCAGCCTTAGTCCTCTTCATCTTGCGCAAATTACCCCCCAAGAGAGTATCAGCTCAGTATCATCCAATACGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0008150 GO:0009705 GO:0016020 GO:0016032 GO:0019058 GO:0019079 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044403 GO:0044419 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046786 GO:0051704 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF1084

Protein Analysis

274

Amino Acids

31.69

Weight (kDa)

8.8

Isoelectric Point (pI)

49.91

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
THH1_TOM1-3_dom	PF06454	22 - 218	6.8e-99	THH1/TOM1/TOM3 domain
THH1_TOM1-3_dom	PF06454	221 - 274	1.1e-22	THH1/TOM1/TOM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012412)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G21790
fragaria_vesca	FvH4_3g02360 FvH4_3g02360
malus_domestica	MD05G1343500.v1.1 MD10G1318600.v1.1
prunus_persica	Prupe.4G023400_v2.0.a1
pyrus_communis	pycom05g31290
rosa_chinensis	RchiOBHm_Chr5g0003581
rosa_laevigata	RLG00000031154
rosa_multiflora	Rmu_sc0004279.1_g000004 Rmu_sc0015897.1_g000002 Rmu_sc0022447.1_g000003
rosa_roxburghii	Rroxscaffold_1G00072380
rosa_rugosa	Rorug04G0404700 Rorug04G0404800
rosa_samantha	Rh5AG031600 Rh5BG030500 Rh5CG034200
rosa_wichuraiana	Rw5G002940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	35
Acc16I	TGCGCA	1 cut(s)	776
AccB1I	GGYRCC	1 cut(s)	37
AccI	GTMKAC	1 cut(s)	92
AccII	CGCG	2 cut(s)	131, 258
AciI	CCGC	3 cut(s)	17, 131, 666
AclWI	GGATC	3 cut(s)	336, 708, 736
AcsI	RAATTY	1 cut(s)	235
AcyI	GRCGYC	2 cut(s)	32, 38
AfaI	GTAC	4 cut(s)	200, 359, 461, 468
AfiI	CCNNNNNNNGG	2 cut(s)	200, 379
AgsI	TTSAA	3 cut(s)	182, 623, 715
AjnI	CCWGG	3 cut(s)	68, 334, 396
AluBI	AGCT	4 cut(s)	169, 424, 545, 803
AluI	AGCT	4 cut(s)	169, 424, 545, 803
Alw26I	GTCTC	2 cut(s)	151, 601
AlwI	GGATC	3 cut(s)	336, 708, 736
AoxI	GGCC	3 cut(s)	48, 66, 132
ApeKI	GCWGC	3 cut(s)	25, 542, 560
ApoI	RAATTY	1 cut(s)	235
Asp700I	GAANNNNTTC	1 cut(s)	719
AspLEI	GCGC	5 cut(s)	40, 131, 258, 260, 777
AsuHPI	GGTGA	1 cut(s)	386
BanI	GGYRCC	1 cut(s)	37
BbvCI	CCTCAGC	1 cut(s)	751
BbvI	GCAGC	3 cut(s)	12, 547, 554
BccI	CCATC	2 cut(s)	37, 58
BceAI	ACGGC	2 cut(s)	35, 124
BciT130I	CCWGG	3 cut(s)	70, 336, 398
BcoDI	GTCTC	2 cut(s)	151, 601
BfaI	CTAG	2 cut(s)	96, 566
BfoI	RGCGCY	1 cut(s)	41
BisI	GCNGC	4 cut(s)	26, 132, 543, 561
BlsI	GCNGC	4 cut(s)	27, 133, 544, 562
Bme1390I	CCNGG	3 cut(s)	70, 336, 398
BmiI	GGNNCC	1 cut(s)	39
BmrFI	CCNGG	3 cut(s)	70, 336, 398
BmsI	GCATC	3 cut(s)	120, 670, 692
Bpu10I	CCTNAGC	2 cut(s)	425, 751
BsaHI	GRCGYC	2 cut(s)	32, 38
BsaJI	CCNNGG	2 cut(s)	51, 302
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 379
BseBI	CCWGG	3 cut(s)	70, 336, 398
BseDI	CCNNGG	2 cut(s)	51, 302
BseGI	GGATG	3 cut(s)	661, 703, 811
BseLI	CCNNNNNNNGG	2 cut(s)	200, 379
BseMII	CTCAG	4 cut(s)	439, 596, 765, 818
BsePI	GCGCGC	1 cut(s)	256
BseRI	GAGGAG	1 cut(s)	139
BseXI	GCAGC	3 cut(s)	12, 547, 554
BsgI	GTGCAG	1 cut(s)	546
Bsh1236I	CGCG	2 cut(s)	131, 258
BshFI	GGCC	3 cut(s)	50, 68, 134
BshNI	GGYRCC	1 cut(s)	37
BsiSI	CCGG	1 cut(s)	194
BslFI	GGGAC	1 cut(s)	89
BslI	CCNNNNNNNGG	2 cut(s)	200, 379
BsmAI	GTCTC	2 cut(s)	151, 601
BsmBI	CGTCTC	2 cut(s)	151, 601
BsmFI	GGGAC	1 cut(s)	89
BsmI	GAATGC	3 cut(s)	15, 719, 721
BsnI	GGCC	3 cut(s)	50, 68, 134
Bsp143I	GATC	3 cut(s)	328, 700, 741
BspACI	CCGC	3 cut(s)	17, 131, 666
BspANI	GGCC	3 cut(s)	50, 68, 134
BspCNI	CTCAG	4 cut(s)	438, 597, 764, 817
BspFNI	CGCG	2 cut(s)	131, 258
BspHI	TCATGA	1 cut(s)	649
BspLI	GGNNCC	1 cut(s)	39
BspPI	GGATC	3 cut(s)	336, 708, 736
BspT107I	GGYRCC	1 cut(s)	37
BssECI	CCNNGG	2 cut(s)	51, 302
BssHII	GCGCGC	1 cut(s)	256
BssMI	GATC	3 cut(s)	328, 700, 741
BssNI	GRCGYC	2 cut(s)	32, 38
BssT1I	CCWWGG	1 cut(s)	302
Bst2UI	CCWGG	3 cut(s)	70, 336, 398
Bst4CI	ACNGT	1 cut(s)	203
Bst6I	CTCTTC	1 cut(s)	770
BstACI	GRCGYC	2 cut(s)	32, 38
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	5 cut(s)	425, 605, 751, 757, 804
BstDSI	CCRYGG	1 cut(s)	51
BstF5I	GGATG	3 cut(s)	661, 703, 811
BstFNI	CGCG	2 cut(s)	131, 258
BstH2I	RGCGCY	1 cut(s)	41
BstHHI	GCGC	5 cut(s)	40, 131, 258, 260, 777
BstKTI	GATC	3 cut(s)	331, 703, 744
BstMAI	GTCTC	2 cut(s)	151, 601
BstMBI	GATC	3 cut(s)	328, 700, 741
BstMWI	GCNNNNNNNGC	2 cut(s)	25, 137
BstNI	CCWGG	3 cut(s)	70, 336, 398
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	3 cut(s)	68, 334, 396
BstUI	CGCG	2 cut(s)	131, 258
BstV1I	GCAGC	3 cut(s)	12, 547, 554
BstX2I	RGATCY	2 cut(s)	328, 741
BstYI	RGATCY	2 cut(s)	328, 741
BsuRI	GGCC	3 cut(s)	50, 68, 134
BtgI	CCRYGG	1 cut(s)	51
BtsCI	GGATG	3 cut(s)	661, 703, 811
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	649
CfoI	GCGC	5 cut(s)	40, 131, 258, 260, 777
CseI	GACGC	1 cut(s)	220
Csp6I	GTAC	4 cut(s)	199, 358, 460, 467
CviAII	CATG	3 cut(s)	601, 650, 730
CviJI	RGCY	9 cut(s)	50, 68, 134, 169, 424, 545, 560, 755, 803
CviKI_1	RGCY	9 cut(s)	50, 68, 134, 169, 424, 545, 560, 755, 803
CviQI	GTAC	4 cut(s)	199, 358, 460, 467
DdeI	CTNAG	5 cut(s)	425, 605, 751, 757, 804
DinI	GGCGCC	1 cut(s)	39
DpnI	GATC	3 cut(s)	330, 702, 743
DpnII	GATC	3 cut(s)	328, 700, 741
Eam1104I	CTCTTC	1 cut(s)	770
EarI	CTCTTC	1 cut(s)	770
Eco130I	CCWWGG	1 cut(s)	302
Eco32I	GATATC	1 cut(s)	82
EcoRII	CCWGG	3 cut(s)	68, 334, 396
EcoRV	GATATC	1 cut(s)	82
EcoT14I	CCWWGG	1 cut(s)	302
EcoT22I	ATGCAT	2 cut(s)	685, 721
EgeI	GGCGCC	1 cut(s)	39
EheI	GGCGCC	1 cut(s)	39
ErhI	CCWWGG	1 cut(s)	302
Esp3I	CGTCTC	2 cut(s)	151, 601
FaeI	CATG	3 cut(s)	604, 653, 733
FaiI	YATR	9 cut(s)	138, 233, 391, 438, 487, 582, 602, 651, 731
FalI	AAGNNNNNCTT	2 cut(s)	272, 304
FaqI	GGGAC	1 cut(s)	89
FatI	CATG	3 cut(s)	600, 649, 729
FblI	GTMKAC	1 cut(s)	92
Fnu4HI	GCNGC	4 cut(s)	26, 132, 543, 561
FokI	GGATG	3 cut(s)	668, 690, 798
Fsp4HI	GCNGC	4 cut(s)	26, 132, 543, 561
FspBI	CTAG	2 cut(s)	96, 566
FspI	TGCGCA	1 cut(s)	776
GlaI	GCGC	5 cut(s)	39, 130, 257, 259, 776
GluI	GCNGC	4 cut(s)	26, 132, 543, 561
HaeII	RGCGCY	1 cut(s)	41
HaeIII	GGCC	3 cut(s)	50, 68, 134
HapII	CCGG	1 cut(s)	194
HgaI	GACGC	1 cut(s)	220
HhaI	GCGC	5 cut(s)	40, 131, 258, 260, 777
Hin1I	GRCGYC	2 cut(s)	32, 38
Hin1II	CATG	3 cut(s)	604, 653, 733
Hin6I	GCGC	5 cut(s)	38, 129, 256, 258, 775
HinP1I	GCGC	5 cut(s)	38, 129, 256, 258, 775
HincII	GTYRAC	1 cut(s)	93
HindII	GTYRAC	1 cut(s)	93
HinfI	GANTC	2 cut(s)	89, 623
HpaII	CCGG	1 cut(s)	194
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	3 cut(s)	93, 360, 410
Hpy188III	TCNNGA	4 cut(s)	61, 427, 481, 650
Hpy8I	GTNNAC	3 cut(s)	93, 360, 410
Hpy99I	CGWCG	3 cut(s)	37, 158, 214
HpyAV	CCTTC	4 cut(s)	30, 211, 582, 630
HpyCH4III	ACNGT	1 cut(s)	203
HpyCH4IV	ACGT	4 cut(s)	32, 356, 610, 820
HpyCH4V	TGCA	5 cut(s)	298, 542, 563, 683, 719
HpyF10VI	GCNNNNNNNGC	2 cut(s)	25, 137
HpyF3I	CTNAG	5 cut(s)	425, 605, 751, 757, 804
HpySE526I	ACGT	4 cut(s)	32, 356, 610, 820
Hsp92I	GRCGYC	2 cut(s)	32, 38
Hsp92II	CATG	3 cut(s)	604, 653, 733
HspAI	GCGC	5 cut(s)	38, 129, 256, 258, 775
KasI	GGCGCC	1 cut(s)	37
Kzo9I	GATC	3 cut(s)	328, 700, 741
Lsp1109I	GCAGC	3 cut(s)	12, 547, 554
LweI	GCATC	3 cut(s)	120, 670, 692
MaeI	CTAG	2 cut(s)	96, 566
MaeII	ACGT	4 cut(s)	32, 356, 610, 820
MalI	GATC	3 cut(s)	330, 702, 743
MboI	GATC	3 cut(s)	328, 700, 741
MboII	GAAGA	5 cut(s)	106, 323, 340, 652, 757
MfeI	CAATTG	2 cut(s)	261, 618
MflI	RGATCY	2 cut(s)	328, 741
MluCI	AATT	6 cut(s)	182, 235, 261, 576, 618, 779
Mly113I	GGCGCC	1 cut(s)	38
MlyI	GAGTC	1 cut(s)	98
MmeI	TCCRAC	1 cut(s)	185
MnlI	CCTC	9 cut(s)	40, 152, 160, 488, 500, 578, 646, 760, 773
Mph1103I	ATGCAT	2 cut(s)	685, 721
MroXI	GAANNNNTTC	1 cut(s)	719
MseI	TTAA	1 cut(s)	575
MslI	CAYNNNNRTG	1 cut(s)	654
MspA1I	CMGCKG	1 cut(s)	545
MspI	CCGG	1 cut(s)	194
MspR9I	CCNGG	3 cut(s)	70, 336, 398
MunI	CAATTG	2 cut(s)	261, 618
Mva1269I	GAATGC	3 cut(s)	15, 719, 721
MvaI	CCWGG	3 cut(s)	70, 336, 398
MvnI	CGCG	2 cut(s)	131, 258
MwoI	GCNNNNNNNGC	2 cut(s)	25, 137
NarI	GGCGCC	1 cut(s)	38
NdeII	GATC	3 cut(s)	328, 700, 741
NlaIII	CATG	3 cut(s)	604, 653, 733
NlaIV	GGNNCC	1 cut(s)	39
NsbI	TGCGCA	1 cut(s)	776
NsiI	ATGCAT	2 cut(s)	685, 721
NspI	RCATGY	1 cut(s)	733
PagI	TCATGA	1 cut(s)	649
PauI	GCGCGC	1 cut(s)	256
PcsI	WCGNNNNNNNCGW	4 cut(s)	29, 38, 84, 150
PctI	GAATGC	3 cut(s)	15, 719, 721
PdmI	GAANNNNTTC	1 cut(s)	719
PfeI	GAWTC	1 cut(s)	623
PfoI	TCCNGGA	1 cut(s)	334
PkrI	GCNGC	4 cut(s)	27, 133, 544, 562
PleI	GAGTC	1 cut(s)	97
PluTI	GGCGCC	1 cut(s)	41
PpsI	GAGTC	1 cut(s)	97
Psp6I	CCWGG	3 cut(s)	68, 334, 396
PspGI	CCWGG	3 cut(s)	68, 334, 396
PspN4I	GGNNCC	1 cut(s)	39
PsuI	RGATCY	2 cut(s)	328, 741
PteI	GCGCGC	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	545
RsaI	GTAC	4 cut(s)	200, 359, 461, 468
RsaNI	GTAC	4 cut(s)	199, 358, 460, 467
RseI	CAYNNNNRTG	1 cut(s)	654
SalI	GTCGAC	1 cut(s)	91
SaqAI	TTAA	1 cut(s)	575
SatI	GCNGC	4 cut(s)	26, 132, 543, 561
Sau3AI	GATC	3 cut(s)	328, 700, 741
SchI	GAGTC	1 cut(s)	98
ScrFI	CCNGG	3 cut(s)	70, 336, 398
SfaNI	GCATC	3 cut(s)	120, 670, 692
SfoI	GGCGCC	1 cut(s)	39
SmiMI	CAYNNNNRTG	1 cut(s)	654
Sse9I	AATT	6 cut(s)	182, 235, 261, 576, 618, 779
SsiI	CCGC	3 cut(s)	17, 131, 666
SspDI	GGCGCC	1 cut(s)	37
SspMI	CTAG	2 cut(s)	96, 566
StyD4I	CCNGG	3 cut(s)	68, 334, 396
StyI	CCWWGG	1 cut(s)	302
TaaI	ACNGT	1 cut(s)	203
TaiI	ACGT	4 cut(s)	35, 359, 613, 823
TaqI	TCGA	1 cut(s)	92
TasI	AATT	6 cut(s)	182, 235, 261, 576, 618, 779
TatI	WGTACW	1 cut(s)	459
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	1 cut(s)	575
Tru9I	TTAA	1 cut(s)	575
TseI	GCWGC	3 cut(s)	25, 542, 560
TspDTI	ATGAA	7 cut(s)	215, 229, 248, 511, 589, 638, 757
TspGWI	ACGGA	1 cut(s)	142
XapI	RAATTY	1 cut(s)	235
XceI	RCATGY	1 cut(s)	733
XmiI	GTMKAC	1 cut(s)	92
XmnI	GAANNNNTTC	1 cut(s)	719
XspI	CTAG	2 cut(s)	96, 566
ZraI	GACGTC	1 cut(s)	33
Zsp2I	ATGCAT	2 cut(s)	685, 721

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.