Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Forward (+)

11807257 .. 11810117

Gene Structure 2861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G22360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

ATGGTGTCGGACCAGGATCTAGCGAAAGGAGTCGAGACTTTGCTTCGACAATCCGACCCTAGCTCTCTCACATCGTTAAGCAGTATTGTTCAGCAGCTTGAAGCTAAGTTAGGGTTAGACCTCACGGAGAAGACGACTTTCATCAGAGATCAGATCAATATCCTCCTCCGTGCTCACCAAAACCCTTCTGCCTCCGTCGCCTCCGCTTCATCCGTACAACAATCTCACCCTCCTCCTCCGCCGTCTTCTCACCAGCAGCAGAATTTGCATTCCGGCGTCAATGTTCCTCCGATGGCGAAAGGGCATTTCACACTTAGCCATCCTTCGCAATTCTCTGTTTCTTCTCAATCACAACAATATCCTTCACATTTCGCTCTTCAGCCTCCTTATCACTCTTATGACCTAAATTTCCGGCAGCCTTATCCGGTTTACATGCCGCCGCAACAGCACCAGCATCAGCAGCAGTCTCCGCGACAACAACAATCCTCTGTGATGCTCTCACATGGCGGGAATGCTTCTCTATCTGTTAATCAAGCCCCAAAAGAAAGTGCTCCGGCTGGAACTAAAAGAAAGGGTGGTCCTGGAGGACTAAACAAAGTCTGTAGGGTTTCTCCAGAACTTGAAGTAGTTGTTGGTGAACCTGCTCTTCCTAGAACTGAGATTGTGAGGCAATTGTGGGCTTATATAAGGAAGAATAACCTTCAAGACCCGAGTAACAAGCGGAAGATCATCTGTGATGATGCGTTGCGTGTGGTTTTTGAGACTGATTGCACTGACATGTTCAAGATGAATAAGTTGCTTGCTAAGCATATTCTCCCGCTTGATCCATCAAAGGACTCTGGTCAAGCAAAAAAGGCAAAAACTGAGGTGGAGACTAAGACTGAGACCACCGAGCCTATTAGTTCAACTGCTATTAGTTCAACTGTTACATTATCTGAGCCACTTGGTAAGTTCTTTGGCACTGGTGAGACGGAGATGGCAGACGAAGAGATTATTCGCCGTGTTTGGGAATACATAAAACTCAACAATTTAGAGGACCCAGTAAATCCAATGGCTATTCAGTGTGATGAAAAGCTCCGAGATCTTCTTGGATGTGAAAGCATTTCAGCTGTGGGGATAAATGAGATGCTGAGGCGCCATATGTACAAGCAGTCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

385

Amino Acids

42.72

Weight (kDa)

7.22

Isoelectric Point (pI)

70.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.4e-11	DEK C terminal domain
SWIB	PF02201	200 - 271	1.6e-27	SWIB/MDM2 domain
SWIB	PF02201	309 - 381	1.2e-20	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	1134
AccII	CGCG	1 cut(s)	472
AciI	CCGC	8 cut(s)	204, 239, 437, 440, 470, 507, 721, 818
AclWI	GGATC	2 cut(s)	24, 818
AcsI	RAATTY	2 cut(s)	262, 406
AcuI	CTGAAG	1 cut(s)	362
AcyI	GRCGYC	2 cut(s)	276, 1135
AfaI	GTAC	2 cut(s)	216, 1145
AfiI	CCNNNNNNNGG	1 cut(s)	1006
AflIII	ACRYGT	1 cut(s)	777
AgsI	TTSAA	6 cut(s)	101, 623, 704, 784, 906, 921
AjnI	CCWGG	2 cut(s)	12, 580
AjuI	GAANNNNNNNTTGG	2 cut(s)	615, 647
AluBI	AGCT	5 cut(s)	63, 97, 104, 1075, 1109
AluI	AGCT	5 cut(s)	63, 97, 104, 1075, 1109
Alw21I	GWGCWC	2 cut(s)	175, 553
Alw26I	GTCTC	6 cut(s)	29, 471, 755, 866, 878, 962
AlwI	GGATC	2 cut(s)	24, 818
Ama87I	CYCGRG	1 cut(s)	709
ApeKI	GCWGC	4 cut(s)	94, 256, 415, 460
ApoI	RAATTY	2 cut(s)	262, 406
AspLEI	GCGC	1 cut(s)	1137
AspS9I	GGNCC	3 cut(s)	10, 578, 1036
AsuHPI	GGTGA	5 cut(s)	167, 218, 242, 647, 977
AvaI	CYCGRG	1 cut(s)	709
AvaII	GGWCC	3 cut(s)	10, 578, 1036
BanI	GGYRCC	1 cut(s)	1134
BbsI	GAAGAC	2 cut(s)	137, 237
Bbv12I	GWGCWC	2 cut(s)	175, 553
BbvCI	CCTCAGC	1 cut(s)	1130
BbvI	GCAGC	4 cut(s)	106, 268, 427, 472
BccI	CCATC	4 cut(s)	286, 327, 835, 970
BceAI	ACGGC	2 cut(s)	226, 984
BciT130I	CCWGG	2 cut(s)	14, 582
BcoDI	GTCTC	6 cut(s)	29, 471, 755, 866, 878, 962
BfaI	CTAG	3 cut(s)	20, 60, 651
BfmI	CTRYAG	1 cut(s)	601
BfoI	RGCGCY	1 cut(s)	1138
BfuAI	ACCTGC	1 cut(s)	649
BglII	AGATCT	1 cut(s)	1081
BisI	GCNGC	6 cut(s)	95, 257, 416, 437, 440, 461
BlpI	GCTNAGC	1 cut(s)	804
BlsI	GCNGC	6 cut(s)	96, 258, 417, 438, 441, 462
Bme1390I	CCNGG	2 cut(s)	14, 582
Bme18I	GGWCC	3 cut(s)	10, 578, 1036
BmeT110I	CYCGRG	1 cut(s)	709
BmgT120I	GGNCC	3 cut(s)	10, 578, 1036
BmiI	GGNNCC	2 cut(s)	1038, 1136
BmrFI	CCNGG	2 cut(s)	14, 582
BmrI	ACTGGG	1 cut(s)	1034
BmsI	GCATC	4 cut(s)	463, 483, 730, 1116
BmuI	ACTGGG	1 cut(s)	1034
BoxI	GACNNNNGTC	1 cut(s)	840
BpiI	GAAGAC	2 cut(s)	137, 237
BpmI	CTGGAG	2 cut(s)	597, 603
Bpu10I	CCTNAGC	1 cut(s)	1130
Bpu1102I	GCTNAGC	1 cut(s)	804
BsaBI	GATNNNNATC	1 cut(s)	158
BsaHI	GRCGYC	2 cut(s)	276, 1135
BsaI	GGTCTC	1 cut(s)	878
BsaWI	WCCGGW	1 cut(s)	424
Bsc4I	CCNNNNNNNGG	1 cut(s)	1006
Bse1I	ACTGG	2 cut(s)	967, 1040
Bse8I	GATNNNNATC	1 cut(s)	158
BseBI	CCWGG	2 cut(s)	14, 582
BseGI	GGATG	3 cut(s)	209, 319, 1097
BseJI	GATNNNNATC	1 cut(s)	158
BseLI	CCNNNNNNNGG	1 cut(s)	1006
BseMII	CTCAG	5 cut(s)	648, 855, 873, 927, 1121
BseNI	ACTGG	2 cut(s)	967, 1040
BseRI	GAGGAG	3 cut(s)	155, 222, 225
BseXI	GCAGC	4 cut(s)	106, 268, 427, 472
Bsh1236I	CGCG	1 cut(s)	472
BshNI	GGYRCC	1 cut(s)	1134
BsiHKAI	GWGCWC	2 cut(s)	175, 553
BsiHKCI	CYCGRG	1 cut(s)	709
BsiSI	CCGG	4 cut(s)	273, 412, 425, 554
BslI	CCNNNNNNNGG	1 cut(s)	1006
BsmAI	GTCTC	6 cut(s)	29, 471, 755, 866, 878, 962
BsmBI	CGTCTC	1 cut(s)	962
BsmI	GAATGC	2 cut(s)	268, 517
Bso31I	GGTCTC	1 cut(s)	878
BsoBI	CYCGRG	1 cut(s)	709
Bsp1286I	GDGCHC	2 cut(s)	175, 553
Bsp1407I	TGTACA	1 cut(s)	1143
Bsp143I	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
Bsp1720I	GCTNAGC	1 cut(s)	804
BspACI	CCGC	8 cut(s)	204, 239, 437, 440, 470, 507, 721, 818
BspCNI	CTCAG	5 cut(s)	649, 856, 874, 928, 1122
BspFNI	CGCG	1 cut(s)	472
BspLI	GGNNCC	2 cut(s)	1038, 1136
BspMI	ACCTGC	1 cut(s)	649
BspPI	GGATC	2 cut(s)	24, 818
BspQI	GCTCTTC	2 cut(s)	381, 651
BspT107I	GGYRCC	1 cut(s)	1134
BspTNI	GGTCTC	1 cut(s)	878
BsrGI	TGTACA	1 cut(s)	1143
BsrI	ACTGG	2 cut(s)	967, 1040
BssMI	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
BssNI	GRCGYC	2 cut(s)	276, 1135
Bst2UI	CCWGG	2 cut(s)	14, 582
Bst4CI	ACNGT	1 cut(s)	925
Bst6I	CTCTTC	3 cut(s)	381, 651, 981
BstACI	GRCGYC	2 cut(s)	276, 1135
BstAPI	GCANNNNNTGC	1 cut(s)	265
BstAUI	TGTACA	1 cut(s)	1143
BstC8I	GCNNGC	1 cut(s)	801
BstDEI	CTNAG	9 cut(s)	105, 314, 657, 804, 864, 876, 882, 936, 1130
BstF5I	GGATG	3 cut(s)	209, 319, 1097
BstFNI	CGCG	1 cut(s)	472
BstH2I	RGCGCY	1 cut(s)	1138
BstHHI	GCGC	1 cut(s)	1137
BstKTI	GATC	6 cut(s)	19, 151, 156, 729, 826, 1084
BstMAI	GTCTC	6 cut(s)	29, 471, 755, 866, 878, 962
BstMBI	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
BstMWI	GCNNNNNNNGC	7 cut(s)	197, 265, 445, 460, 469, 805, 854
BstNI	CCWGG	2 cut(s)	14, 582
BstNSI	RCATGY	2 cut(s)	436, 781
BstPAI	GACNNNNGTC	1 cut(s)	840
BstSCI	CCNGG	2 cut(s)	12, 580
BstSFI	CTRYAG	1 cut(s)	601
BstUI	CGCG	1 cut(s)	472
BstV1I	GCAGC	4 cut(s)	106, 268, 427, 472
BstV2I	GAAGAC	2 cut(s)	137, 237
BstX2I	RGATCY	2 cut(s)	16, 1081
BstYI	RGATCY	2 cut(s)	16, 1081
BtsCI	GGATG	3 cut(s)	209, 319, 1097
BtsIMutI	CAGTG	3 cut(s)	771, 960, 1067
BveI	ACCTGC	1 cut(s)	649
Cac8I	GCNNGC	1 cut(s)	801
CfoI	GCGC	1 cut(s)	1137
Cfr13I	GGNCC	3 cut(s)	10, 578, 1036
CseI	GACGC	1 cut(s)	265
Csp6I	GTAC	2 cut(s)	215, 1144
CviAII	CATG	3 cut(s)	433, 503, 778
CviQI	GTAC	2 cut(s)	215, 1144
DdeI	CTNAG	9 cut(s)	105, 314, 657, 804, 864, 876, 882, 936, 1130
DinI	GGCGCC	1 cut(s)	1136
DpnI	GATC	6 cut(s)	18, 150, 155, 728, 825, 1083
DpnII	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
Eam1104I	CTCTTC	3 cut(s)	381, 651, 981
EarI	CTCTTC	3 cut(s)	381, 651, 981
EciI	GGCGGA	1 cut(s)	228
Eco31I	GGTCTC	1 cut(s)	878
Eco47I	GGWCC	3 cut(s)	10, 578, 1036
Eco57I	CTGAAG	1 cut(s)	362
Eco88I	CYCGRG	1 cut(s)	709
EcoO109I	RGGNCCY	1 cut(s)	1036
EcoRII	CCWGG	2 cut(s)	12, 580
EgeI	GGCGCC	1 cut(s)	1136
EheI	GGCGCC	1 cut(s)	1136
Esp3I	CGTCTC	1 cut(s)	962
FaeI	CATG	3 cut(s)	436, 506, 781
FatI	CATG	3 cut(s)	432, 502, 777
FauI	CCCGC	2 cut(s)	500, 825
FauNDI	CATATG	1 cut(s)	1140
Fnu4HI	GCNGC	6 cut(s)	95, 257, 416, 437, 440, 461
FokI	GGATG	3 cut(s)	196, 306, 1104
Fsp4HI	GCNGC	6 cut(s)	95, 257, 416, 437, 440, 461
FspBI	CTAG	3 cut(s)	20, 60, 651
GlaI	GCGC	1 cut(s)	1136
GluI	GCNGC	6 cut(s)	95, 257, 416, 437, 440, 461
GsuI	CTGGAG	2 cut(s)	597, 603
HaeII	RGCGCY	1 cut(s)	1138
HapII	CCGG	4 cut(s)	273, 412, 425, 554
HgaI	GACGC	1 cut(s)	265
HhaI	GCGC	1 cut(s)	1137
Hin1I	GRCGYC	2 cut(s)	276, 1135
Hin1II	CATG	3 cut(s)	436, 506, 781
Hin6I	GCGC	1 cut(s)	1135
HinP1I	GCGC	1 cut(s)	1135
HinfI	GANTC	2 cut(s)	30, 836
HpaII	CCGG	4 cut(s)	273, 412, 425, 554
HphI	GGTGA	5 cut(s)	167, 218, 242, 647, 977
Hpy166II	GTNNAC	2 cut(s)	430, 638
Hpy188I	TCNGA	7 cut(s)	10, 55, 146, 153, 291, 937, 1079
Hpy188III	TCNNGA	5 cut(s)	34, 614, 704, 784, 1155
Hpy8I	GTNNAC	2 cut(s)	430, 638
Hpy99I	CGWCG	1 cut(s)	200
HpyAV	CCTTC	4 cut(s)	195, 333, 372, 710
HpyCH4III	ACNGT	1 cut(s)	925
HpyCH4V	TGCA	2 cut(s)	268, 771
HpyF10VI	GCNNNNNNNGC	7 cut(s)	197, 265, 445, 460, 469, 805, 854
HpyF3I	CTNAG	9 cut(s)	105, 314, 657, 804, 864, 876, 882, 936, 1130
Hsp92I	GRCGYC	2 cut(s)	276, 1135
Hsp92II	CATG	3 cut(s)	436, 506, 781
HspAI	GCGC	1 cut(s)	1135
KasI	GGCGCC	1 cut(s)	1134
Kzo9I	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
LguI	GCTCTTC	2 cut(s)	381, 651
LmnI	GCTCC	2 cut(s)	556, 1080
Lsp1109I	GCAGC	4 cut(s)	106, 268, 427, 472
LweI	GCATC	4 cut(s)	463, 483, 730, 1116
MaeI	CTAG	3 cut(s)	20, 60, 651
MaeIII	GTNAC	2 cut(s)	713, 925
MalI	GATC	6 cut(s)	18, 150, 155, 728, 825, 1083
MboI	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
MboII	GAAGA	9 cut(s)	142, 237, 333, 368, 638, 703, 736, 998, 1076
MfeI	CAATTG	1 cut(s)	671
MflI	RGATCY	2 cut(s)	16, 1081
MhlI	GDGCHC	2 cut(s)	175, 553
MluCI	AATT	5 cut(s)	262, 329, 406, 671, 1027
Mly113I	GGCGCC	1 cut(s)	1135
MlyI	GAGTC	2 cut(s)	39, 830
MmeI	TCCRAC	1 cut(s)	78
MseI	TTAA	2 cut(s)	77, 528
MslI	CAYNNNNRTG	2 cut(s)	396, 776
MspA1I	CMGCKG	1 cut(s)	1109
MspI	CCGG	4 cut(s)	273, 412, 425, 554
MspR9I	CCNGG	2 cut(s)	14, 582
MunI	CAATTG	1 cut(s)	671
Mva1269I	GAATGC	2 cut(s)	268, 517
MvaI	CCWGG	2 cut(s)	14, 582
MvnI	CGCG	1 cut(s)	472
MwoI	GCNNNNNNNGC	7 cut(s)	197, 265, 445, 460, 469, 805, 854
NarI	GGCGCC	1 cut(s)	1135
NdeI	CATATG	1 cut(s)	1140
NdeII	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
NlaIII	CATG	3 cut(s)	436, 506, 781
NlaIV	GGNNCC	2 cut(s)	1038, 1136
NspI	RCATGY	2 cut(s)	436, 781
PciI	ACATGT	1 cut(s)	777
PciSI	GCTCTTC	2 cut(s)	381, 651
PcsI	WCGNNNNNNNCGW	1 cut(s)	131
PctI	GAATGC	2 cut(s)	268, 517
PfoI	TCCNGGA	1 cut(s)	580
PkrI	GCNGC	6 cut(s)	96, 258, 417, 438, 441, 462
PleI	GAGTC	2 cut(s)	38, 830
PluTI	GGCGCC	1 cut(s)	1138
PpsI	GAGTC	2 cut(s)	38, 830
PpuMI	RGGWCCY	1 cut(s)	1036
PscI	ACATGT	1 cut(s)	777
PshAI	GACNNNNGTC	1 cut(s)	840
Psp5II	RGGWCCY	1 cut(s)	1036
Psp6I	CCWGG	2 cut(s)	12, 580
PspGI	CCWGG	2 cut(s)	12, 580
PspN4I	GGNNCC	2 cut(s)	1038, 1136
PspPI	GGNCC	3 cut(s)	10, 578, 1036
PspPPI	RGGWCCY	1 cut(s)	1036
PsuI	RGATCY	2 cut(s)	16, 1081
PvuII	CAGCTG	1 cut(s)	1109
RsaI	GTAC	2 cut(s)	216, 1145
RsaNI	GTAC	2 cut(s)	215, 1144
RseI	CAYNNNNRTG	2 cut(s)	396, 776
SapI	GCTCTTC	2 cut(s)	381, 651
SaqAI	TTAA	2 cut(s)	77, 528
SatI	GCNGC	6 cut(s)	95, 257, 416, 437, 440, 461
Sau3AI	GATC	6 cut(s)	16, 148, 153, 726, 823, 1081
Sau96I	GGNCC	3 cut(s)	10, 578, 1036
SchI	GAGTC	2 cut(s)	39, 830
ScrFI	CCNGG	2 cut(s)	14, 582
SduI	GDGCHC	2 cut(s)	175, 553
SfaNI	GCATC	4 cut(s)	463, 483, 730, 1116
SfcI	CTRYAG	1 cut(s)	601
SfoI	GGCGCC	1 cut(s)	1136
SinI	GGWCC	3 cut(s)	10, 578, 1036
SmiMI	CAYNNNNRTG	2 cut(s)	396, 776
Sse9I	AATT	5 cut(s)	262, 329, 406, 671, 1027
SsiI	CCGC	8 cut(s)	204, 239, 437, 440, 470, 507, 721, 818
SspDI	GGCGCC	1 cut(s)	1134
SspMI	CTAG	3 cut(s)	20, 60, 651
StyD4I	CCNGG	2 cut(s)	12, 580
TaaI	ACNGT	1 cut(s)	925
TaqI	TCGA	2 cut(s)	33, 46
TasI	AATT	5 cut(s)	262, 329, 406, 671, 1027
TatI	WGTACW	1 cut(s)	1143
TauI	GCSGC	2 cut(s)	439, 442
Tru1I	TTAA	2 cut(s)	77, 528
Tru9I	TTAA	2 cut(s)	77, 528
TscAI	CASTG	3 cut(s)	778, 967, 1067
TseI	GCWGC	4 cut(s)	94, 256, 415, 460
TspDTI	ATGAA	4 cut(s)	130, 198, 803, 1083
TspGWI	ACGGA	5 cut(s)	140, 158, 184, 202, 986
TspRI	CASTG	3 cut(s)	778, 967, 1067
VpaK11BI	GGWCC	3 cut(s)	10, 578, 1036
XapI	RAATTY	2 cut(s)	262, 406
XceI	RCATGY	2 cut(s)	436, 781
XspI	CTAG	3 cut(s)	20, 60, 651

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.