Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Reverse (-)

781918 .. 784837

Gene Structure 2920 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG011600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACAAGGCCCTAACAACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAGCTTCCTCCTCCGCCCCTATCCCCAGCACCAACAACAACAACAACAACCCCAACCGCCCCCACCAAAAGACCATTTTGCCCTCCACCACAACCCTTACCACCACCACCCTCAGTTCGCTCCCACACCATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGCCCTCCCCCTGAGGCCTACACCTTCCAGGCGCAGCAGCCGCCTCAGCAGCAGCTCCGGCATCCGGTGGCCCAGCCGCAGCAGCCGCCTCCCAAGTTCGAGGTCTTCGCCGCCCAGAATGCCACCGCCGTTGCCCCGGAACCGCCCAAAGACAGTGCTCCGACTACTGGAACCAAAAGAAGGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCTCACCTGAGCTTCAGGTTGTTGTTGGTGAACCGGCTTTGCCAAGGACTGAGATTGTGAAGCAGCTCTGGGCATACATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATCTGTGATGATGCCTTGCGCGTGGTATTTGAGACTGATTGTACTGACATGTTCAAGATGAATAAGCTGCTGTCCAAGCATATAATAACCCTTGGACCTAAAAAGGAGCCAACTCAAGCTAAGCGAGTGAAGTTAGATGCTGAGTCTGCAACTGAAACTGATAGTGCTCAACCTGGTTCCTCTACTGTTACAATATCTGAAGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTTAAATCTGAGGCAATAAGACTTGTTTGGGAATATGTAAAGGCTAACAATTTGGAGGATCCTGTAAATTCTATGGTGATTGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGAAAGCATATCTGCTCTGGGGGTTCAAGAGATGTTAGACCGCTATCATTTCATCAAACAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

364

Amino Acids

40.58

Weight (kDa)

7.26

Isoelectric Point (pI)

60.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.5e-12	DEK C terminal domain
SWIB	PF02201	182 - 252	1.5e-28	SWIB/MDM2 domain
SWIB	PF02201	287 - 358	1.1e-17	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 693
AclWI	GGATC	4 cut(s)	644, 965, 978, 995
AcsI	RAATTY	1 cut(s)	979
AcuI	CTGAAG	2 cut(s)	548, 891
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	1 cut(s)	715
AfiI	CCNNNNNNNGG	4 cut(s)	111, 397, 500, 513
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	2 cut(s)	727, 1055
AjnI	CCWGG	2 cut(s)	360, 844
Alw21I	GWGCWC	3 cut(s)	45, 493, 841
Alw26I	GTCTC	3 cut(s)	29, 556, 698
AlwI	GGATC	4 cut(s)	644, 965, 978, 995
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	4 cut(s)	55, 102, 348, 402
ApoI	RAATTY	1 cut(s)	979
AspLEI	GCGC	2 cut(s)	367, 693
AspS9I	GGNCC	5 cut(s)	10, 56, 118, 403, 767
AsuC2I	CCSGG	1 cut(s)	470
AsuHPI	GGTGA	4 cut(s)	61, 546, 590, 1000
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	3 cut(s)	10, 118, 767
AxyI	CCTNAGG	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	970
BbsI	GAAGAC	1 cut(s)	430
Bbv12I	GWGCWC	3 cut(s)	45, 493, 841
BbvCI	CCTCAGC	1 cut(s)	378
BceAI	ACGGC	2 cut(s)	97, 446
BciT130I	CCWGG	2 cut(s)	362, 846
BcnI	CCSGG	1 cut(s)	470
BcoDI	GTCTC	3 cut(s)	29, 556, 698
BfaI	CTAG	2 cut(s)	110, 878
BlpI	GCTNAGC	1 cut(s)	792
Bme1390I	CCNGG	3 cut(s)	362, 470, 846
Bme18I	GGWCC	3 cut(s)	10, 118, 767
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	5 cut(s)	10, 56, 118, 403, 767
BmiI	GGNNCC	5 cut(s)	474, 505, 780, 850, 972
BmrFI	CCNGG	3 cut(s)	362, 470, 846
BmsI	GCATC	5 cut(s)	403, 673, 799, 900, 1016
BpiI	GAAGAC	1 cut(s)	430
Bpu10I	CCTNAGC	2 cut(s)	378, 558
Bpu1102I	GCTNAGC	1 cut(s)	792
BpuEI	CTTGAG	1 cut(s)	771
BpuMI	CCSGG	1 cut(s)	470
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	468, 593, 763
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 273, 303, 314, 344
Bsc4I	CCNNNNNNNGG	4 cut(s)	111, 397, 500, 513
Bse118I	RCCGGY	1 cut(s)	583
Bse1I	ACTGG	1 cut(s)	505
Bse21I	CCTNAGG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	362, 846
BseDI	CCNNGG	3 cut(s)	468, 593, 763
BseGI	GGATG	2 cut(s)	394, 1031
BseLI	CCNNNNNNNGG	4 cut(s)	111, 397, 500, 513
BseMII	CTCAG	7 cut(s)	281, 336, 392, 549, 591, 804, 912
BseNI	ACTGG	1 cut(s)	505
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	3 cut(s)	180, 405, 524
Bsh1236I	CGCG	2 cut(s)	147, 693
BshFI	GGCC	4 cut(s)	57, 104, 350, 404
BsiHKAI	GWGCWC	3 cut(s)	45, 493, 841
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	391, 398, 470, 584
BslI	CCNNNNNNNGG	4 cut(s)	111, 397, 500, 513
BsmAI	GTCTC	3 cut(s)	29, 556, 698
BsmI	GAATGC	1 cut(s)	457
BsnI	GGCC	4 cut(s)	57, 104, 350, 404
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	3 cut(s)	45, 493, 841
Bsp143I	GATC	4 cut(s)	153, 649, 970, 1000
Bsp1720I	GCTNAGC	1 cut(s)	792
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	57, 104, 350, 404
BspCNI	CTCAG	7 cut(s)	280, 337, 391, 550, 592, 805, 913
BspFNI	CGCG	2 cut(s)	147, 693
BspHI	TCATGA	1 cut(s)	1091
BspLI	GGNNCC	5 cut(s)	474, 505, 780, 850, 972
BspPI	GGATC	4 cut(s)	644, 965, 978, 995
BsrFI	RCCGGY	1 cut(s)	583
BsrI	ACTGG	1 cut(s)	505
BssAI	RCCGGY	1 cut(s)	583
BssECI	CCNNGG	3 cut(s)	468, 593, 763
BssMI	GATC	4 cut(s)	153, 649, 970, 1000
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	593, 763
Bst2UI	CCWGG	2 cut(s)	362, 846
Bst4CI	ACNGT	4 cut(s)	40, 488, 859, 1089
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	9 cut(s)	267, 345, 378, 558, 600, 792, 813, 882, 921
BstF5I	GGATG	2 cut(s)	394, 1031
BstFNI	CGCG	2 cut(s)	147, 693
BstHHI	GCGC	2 cut(s)	367, 693
BstKTI	GATC	4 cut(s)	156, 652, 973, 1003
BstMAI	GTCTC	3 cut(s)	29, 556, 698
BstMBI	GATC	4 cut(s)	153, 649, 970, 1000
BstNI	CCWGG	2 cut(s)	362, 846
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	3 cut(s)	360, 468, 844
BstUI	CGCG	2 cut(s)	147, 693
BstV2I	GAAGAC	1 cut(s)	430
BstX2I	RGATCY	2 cut(s)	649, 970
BstYI	RGATCY	2 cut(s)	649, 970
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	57, 104, 350, 404
BtsCI	GGATG	2 cut(s)	394, 1031
BtsIMutI	CAGTG	1 cut(s)	493
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1091
CfoI	GCGC	2 cut(s)	367, 693
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	5 cut(s)	10, 56, 118, 403, 767
CseI	GACGC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	844
Csp6I	GTAC	1 cut(s)	714
CspCI	CAANNNNNGTGG	2 cut(s)	445, 480
CviAII	CATG	3 cut(s)	721, 1013, 1092
CviQI	GTAC	1 cut(s)	714
DdeI	CTNAG	9 cut(s)	267, 345, 378, 558, 600, 792, 813, 882, 921
DpnI	GATC	4 cut(s)	155, 651, 972, 1002
DpnII	GATC	4 cut(s)	153, 649, 970, 1000
DraI	TTTAAA	1 cut(s)	534
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	593, 763
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	10, 118, 767
Eco57I	CTGAAG	2 cut(s)	548, 891
Eco81I	CCTNAGG	1 cut(s)	345
Eco88I	CYCGRG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	360, 844
EcoT14I	CCWWGG	2 cut(s)	593, 763
ErhI	CCWWGG	2 cut(s)	593, 763
FaeI	CATG	3 cut(s)	724, 1016, 1095
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	720, 1012, 1091
FauI	CCCGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	381, 1038
FspBI	CTAG	2 cut(s)	110, 878
GlaI	GCGC	2 cut(s)	366, 692
GsaI	CCCAGC	3 cut(s)	184, 409, 528
HaeIII	GGCC	4 cut(s)	57, 104, 350, 404
HapII	CCGG	4 cut(s)	391, 398, 470, 584
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	367, 693
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	724, 1016, 1095
Hin6I	GCGC	2 cut(s)	365, 691
HinP1I	GCGC	2 cut(s)	365, 691
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	815
HpaII	CCGG	4 cut(s)	391, 398, 470, 584
HphI	GGTGA	4 cut(s)	61, 546, 590, 1000
Hpy166II	GTNNAC	3 cut(s)	50, 79, 581
Hpy188I	TCNGA	4 cut(s)	10, 495, 871, 922
Hpy188III	TCNNGA	4 cut(s)	146, 727, 1055, 1092
Hpy8I	GTNNAC	3 cut(s)	50, 79, 581
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	6 cut(s)	20, 148, 315, 367, 507, 893
HpyCH4III	ACNGT	4 cut(s)	40, 488, 859, 1089
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	821
HpyF3I	CTNAG	9 cut(s)	267, 345, 378, 558, 600, 792, 813, 882, 921
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	724, 1016, 1095
HspAI	GCGC	2 cut(s)	365, 691
Kzo9I	GATC	4 cut(s)	153, 649, 970, 1000
LmnI	GCTCC	6 cut(s)	48, 280, 393, 496, 778, 1014
LweI	GCATC	5 cut(s)	403, 673, 799, 900, 1016
MabI	ACCWGGT	1 cut(s)	844
MaeI	CTAG	2 cut(s)	110, 878
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 859
MalI	GATC	4 cut(s)	155, 651, 972, 1002
MboI	GATC	4 cut(s)	153, 649, 970, 1000
MboII	GAAGA	1 cut(s)	430
MflI	RGATCY	2 cut(s)	649, 970
MhlI	GDGCHC	3 cut(s)	45, 493, 841
MluCI	AATT	3 cut(s)	299, 961, 979
MlyI	GAGTC	1 cut(s)	824
MmeI	TCCRAC	2 cut(s)	96, 518
MseI	TTAA	2 cut(s)	533, 915
MspI	CCGG	4 cut(s)	391, 398, 470, 584
MspR9I	CCNGG	3 cut(s)	362, 470, 846
Mva1269I	GAATGC	1 cut(s)	457
MvaI	CCWGG	2 cut(s)	362, 846
MvnI	CGCG	2 cut(s)	147, 693
NciI	CCSGG	1 cut(s)	470
NdeII	GATC	4 cut(s)	153, 649, 970, 1000
NlaIII	CATG	3 cut(s)	724, 1016, 1095
NlaIV	GGNNCC	5 cut(s)	474, 505, 780, 850, 972
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	724
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	1091
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	1 cut(s)	720
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	457
PleI	GAGTC	1 cut(s)	823
PpsI	GAGTC	1 cut(s)	823
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	2 cut(s)	360, 844
PspFI	CCCAGC	3 cut(s)	180, 405, 524
PspGI	CCWGG	2 cut(s)	360, 844
PspN4I	GGNNCC	5 cut(s)	474, 505, 780, 850, 972
PspPI	GGNCC	5 cut(s)	10, 56, 118, 403, 767
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	649, 970
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	715
RsaNI	GTAC	1 cut(s)	714
SaqAI	TTAA	2 cut(s)	533, 915
Sau3AI	GATC	4 cut(s)	153, 649, 970, 1000
Sau96I	GGNCC	5 cut(s)	10, 56, 118, 403, 767
SchI	GAGTC	1 cut(s)	824
ScrFI	CCNGG	3 cut(s)	362, 470, 846
SduI	GDGCHC	3 cut(s)	45, 493, 841
SexAI	ACCWGGT	1 cut(s)	844
SfaNI	GCATC	5 cut(s)	403, 673, 799, 900, 1016
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	3 cut(s)	10, 118, 767
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	98, 786
SmoI	CTYRAG	2 cut(s)	98, 786
Sse9I	AATT	3 cut(s)	299, 961, 979
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	2 cut(s)	110, 878
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	360, 468, 844
StyI	CCWWGG	2 cut(s)	593, 763
TaaI	ACNGT	4 cut(s)	40, 488, 859, 1089
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	99, 432
TasI	AATT	3 cut(s)	299, 961, 979
TatI	WGTACW	1 cut(s)	713
TauI	GCSGC	4 cut(s)	376, 412, 421, 446
Tru1I	TTAA	2 cut(s)	533, 915
Tru9I	TTAA	2 cut(s)	533, 915
TscAI	CASTG	1 cut(s)	493
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	130, 746, 1069
TspGWI	ACGGA	2 cut(s)	35, 64
TspRI	CASTG	1 cut(s)	493
VpaK11BI	GGWCC	3 cut(s)	10, 118, 767
XapI	RAATTY	1 cut(s)	979
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1019
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	2 cut(s)	110, 878

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.