Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Forward (+)

95714852 .. 95717726

Gene Structure 2875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00074920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACAAGGCCCTAACAACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTAGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAGCTTCCTCCTCCGCCCCTATGCCCAGCACCAACAACAACAACAACAACCCCAACCGCCCCCACCAAAAGACCATTTTGCCCTCCACCACAACCCTTACCACCACCACCCTCAGTTCGCTCCCACACCATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGCCCTCCCCCTGAGGCCTACACCTTCCAGGCGCAGCAGCCGCCTCAGCAGCTTCGGCATCCGGTGGCCCAGCCGCAGCAGCCGCCTCCCAAGTTCGAGGTCTTCGCCGCCCAGAATGCCACCGCTGTCGCCCCGGAACCGCCCAAAGACAGTGCTCCGACTACTGGAACCAAAAGAAGGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCTCCCCTGAGCTTCAGGTTGTTGTTGGTGAACCGGCTTTGCCAAGGACTGAGATTGTGAAGCAGCTCTGGGCATATATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCCTTGCGCGTGGTATTTGAGACTGATTGTACTGACATGTTCAAGATGAATAAGCTGCTGTCCAAGCATATAATAACCCTTGGACCTAAAAAGGAGCCAACTCAAGCTAAGCGAGTAAAGTTAGATGCTGAGTCTGCAACTGACACTGATGGTACTCAACCTGGTTCCTCTACTGTTACAATATCTGAAGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTCAAATCTGAGGCAATAAAACTTGTTTGGGAATATGTAAAGGCTAACAATTTGGAGGTGGGAATACATTCCTTTGTATCATTGATGAAGAATGACCTGTCGGATCCTGTAAATTCTATGGTGATTGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGAAAGCATATCTGCTCTGGGGGTTCAAGAGATGTTAGACCGCTATCATTTCATCAAACAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

378

Amino Acids

42.01

Weight (kDa)

7.28

Isoelectric Point (pI)

55.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.8e-12	DEK C terminal domain
SWIB	PF02201	181 - 251	1.6e-28	SWIB/MDM2 domain
SWIB	PF02201	286 - 322	1.1e-06	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 690
AclWI	GGATC	4 cut(s)	641, 1007, 1020, 1037
AcsI	RAATTY	1 cut(s)	1021
AcuI	CTGAAG	2 cut(s)	545, 888
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	712, 835
AfiI	CCNNNNNNNGG	3 cut(s)	111, 497, 510
AflIII	ACRYGT	1 cut(s)	717
AgsI	TTSAA	2 cut(s)	724, 1097
AjnI	CCWGG	2 cut(s)	360, 841
Alw21I	GWGCWC	2 cut(s)	45, 490
Alw26I	GTCTC	3 cut(s)	29, 553, 695
AlwI	GGATC	4 cut(s)	641, 1007, 1020, 1037
AoxI	GGCC	4 cut(s)	55, 102, 348, 399
ApeKI	GCWGC	9 cut(s)	94, 134, 367, 370, 382, 409, 412, 610, 736
ApoI	RAATTY	1 cut(s)	1021
Asp700I	GAANNNNTTC	1 cut(s)	976
AspLEI	GCGC	2 cut(s)	367, 690
AspS9I	GGNCC	5 cut(s)	10, 56, 118, 400, 764
AsuC2I	CCSGG	1 cut(s)	467
AsuHPI	GGTGA	3 cut(s)	61, 587, 1042
AvaII	GGWCC	3 cut(s)	10, 118, 764
AxyI	CCTNAGG	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	1012
BbsI	GAAGAC	1 cut(s)	427
Bbv12I	GWGCWC	2 cut(s)	45, 490
BbvCI	CCTCAGC	1 cut(s)	378
BbvI	GCAGC	9 cut(s)	106, 121, 379, 382, 394, 421, 424, 622, 723
BccI	CCATC	1 cut(s)	824
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	2 cut(s)	362, 843
BcnI	CCSGG	1 cut(s)	467
BcoDI	GTCTC	3 cut(s)	29, 553, 695
BfaI	CTAG	3 cut(s)	98, 110, 875
BlpI	GCTNAGC	1 cut(s)	789
Bme1390I	CCNGG	3 cut(s)	362, 467, 843
Bme18I	GGWCC	3 cut(s)	10, 118, 764
BmgT120I	GGNCC	5 cut(s)	10, 56, 118, 400, 764
BmiI	GGNNCC	5 cut(s)	471, 502, 777, 847, 1014
BmrFI	CCNGG	3 cut(s)	362, 467, 843
BmsI	GCATC	5 cut(s)	400, 670, 796, 897, 1058
BpiI	GAAGAC	1 cut(s)	427
Bpu10I	CCTNAGC	2 cut(s)	378, 555
Bpu1102I	GCTNAGC	1 cut(s)	789
BpuEI	CTTGAG	1 cut(s)	768
BpuMI	CCSGG	1 cut(s)	467
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	465, 590, 760
BsaWI	WCCGGW	1 cut(s)	394
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 273, 303, 314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 497, 510
Bse118I	RCCGGY	1 cut(s)	580
Bse1I	ACTGG	1 cut(s)	502
Bse21I	CCTNAGG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	362, 843
BseDI	CCNNGG	3 cut(s)	465, 590, 760
BseGI	GGATG	2 cut(s)	391, 1073
BseLI	CCNNNNNNNGG	3 cut(s)	111, 497, 510
BseMII	CTCAG	7 cut(s)	281, 336, 392, 546, 588, 801, 909
BseNI	ACTGG	1 cut(s)	502
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	9 cut(s)	106, 121, 379, 382, 394, 421, 424, 622, 723
BseYI	CCCAGC	3 cut(s)	180, 402, 521
Bsh1236I	CGCG	2 cut(s)	147, 690
BshFI	GGCC	4 cut(s)	57, 104, 350, 401
BsiHKAI	GWGCWC	2 cut(s)	45, 490
BsiSI	CCGG	3 cut(s)	395, 467, 581
BslI	CCNNNNNNNGG	3 cut(s)	111, 497, 510
BsmAI	GTCTC	3 cut(s)	29, 553, 695
BsmI	GAATGC	1 cut(s)	454
BsnI	GGCC	4 cut(s)	57, 104, 350, 401
Bsp1286I	GDGCHC	2 cut(s)	45, 490
Bsp143I	GATC	4 cut(s)	153, 646, 1012, 1042
Bsp1720I	GCTNAGC	1 cut(s)	789
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	57, 104, 350, 401
BspCNI	CTCAG	7 cut(s)	280, 337, 391, 547, 589, 802, 910
BspFNI	CGCG	2 cut(s)	147, 690
BspHI	TCATGA	1 cut(s)	1133
BspLI	GGNNCC	5 cut(s)	471, 502, 777, 847, 1014
BspPI	GGATC	4 cut(s)	641, 1007, 1020, 1037
BsrFI	RCCGGY	1 cut(s)	580
BsrI	ACTGG	1 cut(s)	502
BssAI	RCCGGY	1 cut(s)	580
BssECI	CCNNGG	3 cut(s)	465, 590, 760
BssMI	GATC	4 cut(s)	153, 646, 1012, 1042
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	590, 760
Bst2UI	CCWGG	2 cut(s)	362, 843
Bst4CI	ACNGT	4 cut(s)	40, 485, 856, 1131
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	9 cut(s)	267, 345, 378, 555, 597, 789, 810, 879, 918
BstF5I	GGATG	2 cut(s)	391, 1073
BstFNI	CGCG	2 cut(s)	147, 690
BstHHI	GCGC	2 cut(s)	367, 690
BstKTI	GATC	4 cut(s)	156, 649, 1015, 1045
BstMAI	GTCTC	3 cut(s)	29, 553, 695
BstMBI	GATC	4 cut(s)	153, 646, 1012, 1042
BstNI	CCWGG	2 cut(s)	362, 843
BstNSI	RCATGY	1 cut(s)	721
BstSCI	CCNGG	3 cut(s)	360, 465, 841
BstUI	CGCG	2 cut(s)	147, 690
BstV1I	GCAGC	9 cut(s)	106, 121, 379, 382, 394, 421, 424, 622, 723
BstV2I	GAAGAC	1 cut(s)	427
BstX2I	RGATCY	2 cut(s)	646, 1012
BstYI	RGATCY	2 cut(s)	646, 1012
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	57, 104, 350, 401
BtsCI	GGATG	2 cut(s)	391, 1073
BtsIMutI	CAGTG	2 cut(s)	490, 825
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1133
CfoI	GCGC	2 cut(s)	367, 690
Cfr10I	RCCGGY	1 cut(s)	580
Cfr13I	GGNCC	5 cut(s)	10, 56, 118, 400, 764
CseI	GACGC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	841
Csp6I	GTAC	2 cut(s)	711, 834
CviAII	CATG	3 cut(s)	718, 1055, 1134
CviQI	GTAC	2 cut(s)	711, 834
DdeI	CTNAG	9 cut(s)	267, 345, 378, 555, 597, 789, 810, 879, 918
DpnI	GATC	4 cut(s)	155, 648, 1014, 1044
DpnII	GATC	4 cut(s)	153, 646, 1012, 1042
DraI	TTTAAA	1 cut(s)	531
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	590, 760
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	10, 118, 764
Eco57I	CTGAAG	2 cut(s)	545, 888
Eco81I	CCTNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	360, 841
EcoT14I	CCWWGG	2 cut(s)	590, 760
ErhI	CCWWGG	2 cut(s)	590, 760
FaeI	CATG	3 cut(s)	721, 1058, 1137
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	717, 1054, 1133
FauI	CCCGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	378, 1080
FspBI	CTAG	3 cut(s)	98, 110, 875
GlaI	GCGC	2 cut(s)	366, 689
GsaI	CCCAGC	3 cut(s)	184, 406, 525
HaeIII	GGCC	4 cut(s)	57, 104, 350, 401
HapII	CCGG	3 cut(s)	395, 467, 581
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	367, 690
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	721, 1058, 1137
Hin6I	GCGC	2 cut(s)	365, 688
HinP1I	GCGC	2 cut(s)	365, 688
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	812
HpaII	CCGG	3 cut(s)	395, 467, 581
HphI	GGTGA	3 cut(s)	61, 587, 1042
Hpy166II	GTNNAC	3 cut(s)	50, 79, 578
Hpy188I	TCNGA	5 cut(s)	10, 492, 868, 919, 1012
Hpy188III	TCNNGA	4 cut(s)	146, 724, 1097, 1134
Hpy8I	GTNNAC	3 cut(s)	50, 79, 578
Hpy99I	CGWCG	1 cut(s)	89
HpyAV	CCTTC	6 cut(s)	20, 148, 315, 367, 504, 890
HpyCH4III	ACNGT	4 cut(s)	40, 485, 856, 1131
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	818
HpyF3I	CTNAG	9 cut(s)	267, 345, 378, 555, 597, 789, 810, 879, 918
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	721, 1058, 1137
HspAI	GCGC	2 cut(s)	365, 688
Kzo9I	GATC	4 cut(s)	153, 646, 1012, 1042
LmnI	GCTCC	5 cut(s)	48, 280, 493, 775, 1056
Lsp1109I	GCAGC	9 cut(s)	106, 121, 379, 382, 394, 421, 424, 622, 723
LweI	GCATC	5 cut(s)	400, 670, 796, 897, 1058
MabI	ACCWGGT	1 cut(s)	841
MaeI	CTAG	3 cut(s)	98, 110, 875
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 856
MalI	GATC	4 cut(s)	155, 648, 1014, 1044
MboI	GATC	4 cut(s)	153, 646, 1012, 1042
MboII	GAAGA	2 cut(s)	427, 1009
MflI	RGATCY	2 cut(s)	646, 1012
MhlI	GDGCHC	2 cut(s)	45, 490
MluCI	AATT	3 cut(s)	299, 958, 1021
MlyI	GAGTC	1 cut(s)	821
MmeI	TCCRAC	3 cut(s)	96, 515, 990
MroXI	GAANNNNTTC	1 cut(s)	976
MseI	TTAA	1 cut(s)	530
MspA1I	CMGCKG	1 cut(s)	458
MspI	CCGG	3 cut(s)	395, 467, 581
MspR9I	CCNGG	3 cut(s)	362, 467, 843
Mva1269I	GAATGC	1 cut(s)	454
MvaI	CCWGG	2 cut(s)	362, 843
MvnI	CGCG	2 cut(s)	147, 690
NciI	CCSGG	1 cut(s)	467
NdeII	GATC	4 cut(s)	153, 646, 1012, 1042
NlaIII	CATG	3 cut(s)	721, 1058, 1137
NlaIV	GGNNCC	5 cut(s)	471, 502, 777, 847, 1014
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	721
PagI	TCATGA	1 cut(s)	1133
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	1 cut(s)	717
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	454
PdmI	GAANNNNTTC	1 cut(s)	976
PleI	GAGTC	1 cut(s)	820
PpsI	GAGTC	1 cut(s)	820
PscI	ACATGT	1 cut(s)	717
Psp6I	CCWGG	2 cut(s)	360, 841
PspFI	CCCAGC	3 cut(s)	180, 402, 521
PspGI	CCWGG	2 cut(s)	360, 841
PspN4I	GGNNCC	5 cut(s)	471, 502, 777, 847, 1014
PspPI	GGNCC	5 cut(s)	10, 56, 118, 400, 764
PsuI	RGATCY	2 cut(s)	646, 1012
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	2 cut(s)	712, 835
RsaNI	GTAC	2 cut(s)	711, 834
SaqAI	TTAA	1 cut(s)	530
Sau3AI	GATC	4 cut(s)	153, 646, 1012, 1042
Sau96I	GGNCC	5 cut(s)	10, 56, 118, 400, 764
SchI	GAGTC	1 cut(s)	821
ScrFI	CCNGG	3 cut(s)	362, 467, 843
SduI	GDGCHC	2 cut(s)	45, 490
SexAI	ACCWGGT	1 cut(s)	841
SfaNI	GCATC	5 cut(s)	400, 670, 796, 897, 1058
SinI	GGWCC	3 cut(s)	10, 118, 764
SmlI	CTYRAG	1 cut(s)	783
SmoI	CTYRAG	1 cut(s)	783
Sse9I	AATT	3 cut(s)	299, 958, 1021
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	98, 110, 875
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	360, 465, 841
StyI	CCWWGG	2 cut(s)	590, 760
TaaI	ACNGT	4 cut(s)	40, 485, 856, 1131
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	429
TasI	AATT	3 cut(s)	299, 958, 1021
TatI	WGTACW	1 cut(s)	710
TauI	GCSGC	4 cut(s)	376, 409, 418, 443
Tru1I	TTAA	1 cut(s)	530
Tru9I	TTAA	1 cut(s)	530
TscAI	CASTG	2 cut(s)	490, 832
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	9 cut(s)	94, 134, 367, 370, 382, 409, 412, 610, 736
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	130, 743, 1010, 1111
TspGWI	ACGGA	2 cut(s)	35, 64
TspRI	CASTG	2 cut(s)	490, 832
VpaK11BI	GGWCC	3 cut(s)	10, 118, 764
XapI	RAATTY	1 cut(s)	1021
XceI	RCATGY	1 cut(s)	721
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1061
XmnI	GAANNNNTTC	1 cut(s)	976
XspI	CTAG	3 cut(s)	98, 110, 875

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.