Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Reverse (-)

770341 .. 772579

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG012400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1098 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACAAGGCCCTAACAACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAGCTTCCTCCTCCGCCCCTATCCCCTGCACCACCACCAACAACAACAACAACCCCAACCGCCCCCACCAAAAGACCATTTTGCCCTCCACCACAACCCTTACCACCACCACCCTCAGTTCGCTCCCACACCATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGCCCTCCCCCTGAGGCCTACACCTTCCAGGCGCAGCAGCCGCCTCAGCAGCAGCTCCGGCGTCCGGTGGCCCAGCCGCAGCAGCCGCCTCCCAAGTTCGAGGTCCTCGCCGCCCAGAATGCCACCGCCGTCGCCCCGGAACCGCCCAAAGACAGTGCTCCGACTACTGGAACCAAAAGAAGGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCTCACCTGAGCTTCAGGTTGTTGTTGGTGAACCGGCCTTGCCAAGGACCGAGATTGTGAAGCAGCTCTGGGCATATATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCCTTGCGCGTGGTATTTGAGACTGATTGTACTGACATGTTCAAGATGAATAAGCTGCTGTCCAAGCATATAATAACCCTTGGACCTAAAAAGGAGCCAACTCAAGCTAAGCGAGTAAAGTTAGATGCTGAGTCTGCAACTGACACTGATAATACTCAACCTGGTTCCTCTACTGTTACAATATCTGAAGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTCAAATCTGAGGCAATAAGACTTGTTTGGGAATATGTAAAGGCTAACAATTTGGAGGATCCTGTAAATTCTATGGTGATTGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGAAAGCATATCTGCTCTGGGGGTTCAAGAGATGTTAGACCGCTATCATTTCATCAAACAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

365

Amino Acids

40.74

Weight (kDa)

7.75

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.5e-12	DEK C terminal domain
SWIB	PF02201	183 - 253	1.5e-28	SWIB/MDM2 domain
SWIB	PF02201	288 - 359	1.1e-17	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 696
AclWI	GGATC	4 cut(s)	647, 968, 981, 998
AcsI	RAATTY	1 cut(s)	982
AcuI	CTGAAG	2 cut(s)	551, 894
AcyI	GRCGYC	2 cut(s)	84, 397
AfaI	GTAC	1 cut(s)	718
AfiI	CCNNNNNNNGG	5 cut(s)	111, 400, 503, 516, 597
AflIII	ACRYGT	1 cut(s)	723
AgsI	TTSAA	2 cut(s)	730, 1058
AjnI	CCWGG	2 cut(s)	363, 847
Alw21I	GWGCWC	2 cut(s)	45, 496
Alw26I	GTCTC	3 cut(s)	29, 559, 701
AlwI	GGATC	4 cut(s)	647, 968, 981, 998
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	5 cut(s)	55, 102, 351, 405, 588
ApoI	RAATTY	1 cut(s)	982
AspLEI	GCGC	2 cut(s)	370, 696
AspS9I	GGNCC	7 cut(s)	10, 56, 118, 406, 439, 600, 770
AsuC2I	CCSGG	1 cut(s)	473
AsuHPI	GGTGA	4 cut(s)	61, 549, 593, 1003
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	5 cut(s)	10, 118, 439, 600, 770
AxyI	CCTNAGG	1 cut(s)	348
BamHI	GGATCC	1 cut(s)	973
Bbv12I	GWGCWC	2 cut(s)	45, 496
BbvCI	CCTCAGC	1 cut(s)	381
BceAI	ACGGC	2 cut(s)	97, 449
BciT130I	CCWGG	2 cut(s)	365, 849
BcnI	CCSGG	1 cut(s)	473
BcoDI	GTCTC	3 cut(s)	29, 559, 701
BfaI	CTAG	2 cut(s)	110, 881
BlpI	GCTNAGC	1 cut(s)	795
Bme1390I	CCNGG	3 cut(s)	365, 473, 849
Bme18I	GGWCC	5 cut(s)	10, 118, 439, 600, 770
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	7 cut(s)	10, 56, 118, 406, 439, 600, 770
BmiI	GGNNCC	5 cut(s)	477, 508, 783, 853, 975
BmrFI	CCNGG	3 cut(s)	365, 473, 849
BmsI	GCATC	4 cut(s)	676, 802, 903, 1019
Bpu10I	CCTNAGC	2 cut(s)	381, 561
Bpu1102I	GCTNAGC	1 cut(s)	795
BpuEI	CTTGAG	1 cut(s)	774
BpuMI	CCSGG	1 cut(s)	473
BsaHI	GRCGYC	2 cut(s)	84, 397
BsaJI	CCNNGG	3 cut(s)	471, 596, 766
BsaWI	WCCGGW	1 cut(s)	400
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 276, 306, 317, 347
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 400, 503, 516, 597
Bse118I	RCCGGY	1 cut(s)	586
Bse1I	ACTGG	1 cut(s)	508
Bse21I	CCTNAGG	1 cut(s)	348
BseBI	CCWGG	2 cut(s)	365, 849
BseDI	CCNNGG	3 cut(s)	471, 596, 766
BseGI	GGATG	1 cut(s)	1034
BseLI	CCNNNNNNNGG	5 cut(s)	111, 400, 503, 516, 597
BseMII	CTCAG	6 cut(s)	284, 339, 395, 552, 807, 915
BseNI	ACTGG	1 cut(s)	508
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	2 cut(s)	408, 527
BsgI	GTGCAG	1 cut(s)	167
Bsh1236I	CGCG	2 cut(s)	147, 696
BshFI	GGCC	5 cut(s)	57, 104, 353, 407, 590
BsiHKAI	GWGCWC	2 cut(s)	45, 496
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	394, 401, 473, 587
BslI	CCNNNNNNNGG	5 cut(s)	111, 400, 503, 516, 597
BsmAI	GTCTC	3 cut(s)	29, 559, 701
BsmI	GAATGC	1 cut(s)	460
BsnI	GGCC	5 cut(s)	57, 104, 353, 407, 590
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	45, 496
Bsp143I	GATC	4 cut(s)	153, 652, 973, 1003
Bsp1720I	GCTNAGC	1 cut(s)	795
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	5 cut(s)	57, 104, 353, 407, 590
BspCNI	CTCAG	6 cut(s)	283, 340, 394, 553, 808, 916
BspFNI	CGCG	2 cut(s)	147, 696
BspHI	TCATGA	1 cut(s)	1094
BspLI	GGNNCC	5 cut(s)	477, 508, 783, 853, 975
BspPI	GGATC	4 cut(s)	647, 968, 981, 998
BsrFI	RCCGGY	1 cut(s)	586
BsrI	ACTGG	1 cut(s)	508
BssAI	RCCGGY	1 cut(s)	586
BssECI	CCNNGG	3 cut(s)	471, 596, 766
BssMI	GATC	4 cut(s)	153, 652, 973, 1003
BssNI	GRCGYC	2 cut(s)	84, 397
BssT1I	CCWWGG	2 cut(s)	596, 766
Bst2UI	CCWGG	2 cut(s)	365, 849
Bst4CI	ACNGT	4 cut(s)	40, 491, 862, 1092
BstACI	GRCGYC	2 cut(s)	84, 397
BstDEI	CTNAG	8 cut(s)	270, 348, 381, 561, 795, 816, 885, 924
BstENI	CCTNNNNNAGG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	1034
BstFNI	CGCG	2 cut(s)	147, 696
BstHHI	GCGC	2 cut(s)	370, 696
BstKTI	GATC	4 cut(s)	156, 655, 976, 1006
BstMAI	GTCTC	3 cut(s)	29, 559, 701
BstMBI	GATC	4 cut(s)	153, 652, 973, 1003
BstNI	CCWGG	2 cut(s)	365, 849
BstNSI	RCATGY	1 cut(s)	727
BstSCI	CCNGG	3 cut(s)	363, 471, 847
BstUI	CGCG	2 cut(s)	147, 696
BstX2I	RGATCY	2 cut(s)	652, 973
BstYI	RGATCY	2 cut(s)	652, 973
Bsu36I	CCTNAGG	1 cut(s)	348
BsuRI	GGCC	5 cut(s)	57, 104, 353, 407, 590
BtsCI	GGATG	1 cut(s)	1034
BtsIMutI	CAGTG	2 cut(s)	496, 831
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1094
CfoI	GCGC	2 cut(s)	370, 696
Cfr10I	RCCGGY	1 cut(s)	586
Cfr13I	GGNCC	7 cut(s)	10, 56, 118, 406, 439, 600, 770
CseI	GACGC	2 cut(s)	73, 386
CsiI	ACCWGGT	1 cut(s)	847
Csp6I	GTAC	1 cut(s)	717
CviAII	CATG	3 cut(s)	724, 1016, 1095
CviQI	GTAC	1 cut(s)	717
DdeI	CTNAG	8 cut(s)	270, 348, 381, 561, 795, 816, 885, 924
DpnI	GATC	4 cut(s)	155, 654, 975, 1005
DpnII	GATC	4 cut(s)	153, 652, 973, 1003
DraI	TTTAAA	1 cut(s)	537
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	596, 766
Eco147I	AGGCCT	1 cut(s)	353
Eco47I	GGWCC	5 cut(s)	10, 118, 439, 600, 770
Eco57I	CTGAAG	2 cut(s)	551, 894
Eco81I	CCTNAGG	1 cut(s)	348
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	595
EcoO109I	RGGNCCY	2 cut(s)	56, 439
EcoRII	CCWGG	2 cut(s)	363, 847
EcoT14I	CCWWGG	2 cut(s)	596, 766
ErhI	CCWWGG	2 cut(s)	596, 766
FaeI	CATG	3 cut(s)	727, 1019, 1098
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	723, 1015, 1094
FauI	CCCGC	1 cut(s)	344
FokI	GGATG	1 cut(s)	1041
FspBI	CTAG	2 cut(s)	110, 881
GlaI	GCGC	2 cut(s)	369, 695
GsaI	CCCAGC	2 cut(s)	412, 531
HaeIII	GGCC	5 cut(s)	57, 104, 353, 407, 590
HapII	CCGG	4 cut(s)	394, 401, 473, 587
HgaI	GACGC	2 cut(s)	73, 386
HhaI	GCGC	2 cut(s)	370, 696
Hin1I	GRCGYC	2 cut(s)	84, 397
Hin1II	CATG	3 cut(s)	727, 1019, 1098
Hin6I	GCGC	2 cut(s)	368, 694
HinP1I	GCGC	2 cut(s)	368, 694
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	818
HpaII	CCGG	4 cut(s)	394, 401, 473, 587
HphI	GGTGA	4 cut(s)	61, 549, 593, 1003
Hpy166II	GTNNAC	3 cut(s)	50, 79, 584
Hpy188I	TCNGA	4 cut(s)	10, 498, 874, 925
Hpy188III	TCNNGA	4 cut(s)	146, 730, 1058, 1095
Hpy8I	GTNNAC	3 cut(s)	50, 79, 584
Hpy99I	CGWCG	2 cut(s)	89, 470
HpyAV	CCTTC	6 cut(s)	20, 148, 318, 370, 510, 896
HpyCH4III	ACNGT	4 cut(s)	40, 491, 862, 1092
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	184, 824
HpyF3I	CTNAG	8 cut(s)	270, 348, 381, 561, 795, 816, 885, 924
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	2 cut(s)	84, 397
Hsp92II	CATG	3 cut(s)	727, 1019, 1098
HspAI	GCGC	2 cut(s)	368, 694
Kzo9I	GATC	4 cut(s)	153, 652, 973, 1003
LmnI	GCTCC	6 cut(s)	48, 283, 396, 499, 781, 1017
LweI	GCATC	4 cut(s)	676, 802, 903, 1019
MabI	ACCWGGT	1 cut(s)	847
MaeI	CTAG	2 cut(s)	110, 881
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 862
MalI	GATC	4 cut(s)	155, 654, 975, 1005
MboI	GATC	4 cut(s)	153, 652, 973, 1003
MflI	RGATCY	2 cut(s)	652, 973
MhlI	GDGCHC	2 cut(s)	45, 496
MluCI	AATT	3 cut(s)	302, 964, 982
MlyI	GAGTC	1 cut(s)	827
MmeI	TCCRAC	2 cut(s)	96, 521
MseI	TTAA	1 cut(s)	536
MspI	CCGG	4 cut(s)	394, 401, 473, 587
MspR9I	CCNGG	3 cut(s)	365, 473, 849
Mva1269I	GAATGC	1 cut(s)	460
MvaI	CCWGG	2 cut(s)	365, 849
MvnI	CGCG	2 cut(s)	147, 696
NciI	CCSGG	1 cut(s)	473
NdeII	GATC	4 cut(s)	153, 652, 973, 1003
NlaIII	CATG	3 cut(s)	727, 1019, 1098
NlaIV	GGNNCC	5 cut(s)	477, 508, 783, 853, 975
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	727
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	1094
PceI	AGGCCT	1 cut(s)	353
PciI	ACATGT	1 cut(s)	723
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	826
PpsI	GAGTC	1 cut(s)	826
PpuMI	RGGWCCY	1 cut(s)	439
PscI	ACATGT	1 cut(s)	723
Psp5II	RGGWCCY	1 cut(s)	439
Psp6I	CCWGG	2 cut(s)	363, 847
PspFI	CCCAGC	2 cut(s)	408, 527
PspGI	CCWGG	2 cut(s)	363, 847
PspN4I	GGNNCC	5 cut(s)	477, 508, 783, 853, 975
PspPI	GGNCC	7 cut(s)	10, 56, 118, 406, 439, 600, 770
PspPPI	RGGWCCY	1 cut(s)	439
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	652, 973
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	718
RsaNI	GTAC	1 cut(s)	717
SaqAI	TTAA	1 cut(s)	536
Sau3AI	GATC	4 cut(s)	153, 652, 973, 1003
Sau96I	GGNCC	7 cut(s)	10, 56, 118, 406, 439, 600, 770
SchI	GAGTC	1 cut(s)	827
ScrFI	CCNGG	3 cut(s)	365, 473, 849
SduI	GDGCHC	2 cut(s)	45, 496
SexAI	ACCWGGT	1 cut(s)	847
SfaNI	GCATC	4 cut(s)	676, 802, 903, 1019
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	5 cut(s)	10, 118, 439, 600, 770
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	98, 789
SmoI	CTYRAG	2 cut(s)	98, 789
Sse9I	AATT	3 cut(s)	302, 964, 982
SseBI	AGGCCT	1 cut(s)	353
SspMI	CTAG	2 cut(s)	110, 881
StuI	AGGCCT	1 cut(s)	353
StyD4I	CCNGG	3 cut(s)	363, 471, 847
StyI	CCWWGG	2 cut(s)	596, 766
TaaI	ACNGT	4 cut(s)	40, 491, 862, 1092
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	99, 435
TaqII	GACCGA	1 cut(s)	617
TasI	AATT	3 cut(s)	302, 964, 982
TatI	WGTACW	1 cut(s)	716
TauI	GCSGC	4 cut(s)	379, 415, 424, 449
Tru1I	TTAA	1 cut(s)	536
Tru9I	TTAA	1 cut(s)	536
TscAI	CASTG	2 cut(s)	496, 838
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	130, 749, 1072
TspGWI	ACGGA	2 cut(s)	35, 64
TspRI	CASTG	2 cut(s)	496, 838
VpaK11BI	GGWCC	5 cut(s)	10, 118, 439, 600, 770
XagI	CCTNNNNNAGG	1 cut(s)	595
XapI	RAATTY	1 cut(s)	982
XceI	RCATGY	1 cut(s)	727
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1022
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	2 cut(s)	110, 881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.