Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Forward (+)

31803853 .. 31806250

Gene Structure 2398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32390.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1020 bp

ATGGCGTCGGACCAAGAAATTGCGGAAGGTGTGGAGACTGTGCTCCGTCAATCAGGCCCTAACGACGTCGCCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCCGGCTTCATTCGCGACCAGATCGACTTCCTCCTCCGCCCCTACGCCCAACTGCCACAACCCCAACCCCCAAAAGCCCATTTTGCCCTCCATTACAACCCCAACCCCCATAGCCACCACCCTCACAACCAGCACCCTCAATTCCTCCCCCAACAATTCCCTCCCCAGTTTGCCCTCCACTCCCACCACCTCGCCACCGAACCCCACAGCTTCCACCCACCGCCACCGCCGCATCAGCAACTACGCGCTCAGCCTCAGTCTCAGCCGCAGCCCCAGCCTCAGCCTCAGCCGCAGCCTCTGCCTGTGAAGACCGAGGCTTTCCCCCAAAATGCTCCCACATCCGCCCCGGAAACCCCCAAAGTGAGTGCTCCGTCTTCTGGAACCAAGAGAAGAGGGGGGCCAGGGGGTCTTAACAAAGTCTGTGGTGTCTCACCTGAGCTTGAGGCTGTTGTTGGTGAACCGGCCTTGCCGAGGACTGAGATTGTGAAGCAGCTCTGGGCATACATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATAATTTGTGACGATGCCTTGCGTGTGGTATTCGAGACAGACTGTACTGACATGTTCAAAATGAATAAGCTGCTATCTAAACATATTATACCCCTTGGACCTAACAAAGAGCCAAGTCAAGCTAAACGATTGAAGGTAGAGGCCAAGTCTACAACTGAGAATACTCAACCTCAACCTCAACCACAAGCGCAAGCGCAAGCGCAACCGGGGTCTCCCACTGTAGGAATATCTGAAGCACTAGCTAACTTTTTGGGCTTTGGAGGAAGGGAGATGCTCCTATCTGAGGCAAGAAGACTTGTTTGGGAGTATGTAAAGGTTAACCGTTTGGAGAGGATCCTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

340

Amino Acids

37.54

Weight (kDa)

9.06

Isoelectric Point (pI)

69.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccI	GTMKAC	1 cut(s)	827
AccII	CGCG	2 cut(s)	147, 378
AciI	CCGC	8 cut(s)	23, 169, 353, 359, 362, 398, 422, 474
AclWI	GGATC	3 cut(s)	653, 1006, 1019
AcuI	CTGAAG	1 cut(s)	930
AcyI	GRCGYC	3 cut(s)	5, 66, 84
AfaI	GTAC	1 cut(s)	724
AfiI	CCNNNNNNNGG	5 cut(s)	111, 509, 603, 899, 961
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	2 cut(s)	736, 811
AjnI	CCWGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	2 cut(s)	961, 993
AluBI	AGCT	8 cut(s)	97, 109, 342, 571, 625, 748, 800, 920
AluI	AGCT	8 cut(s)	97, 109, 342, 571, 625, 748, 800, 920
Alw21I	GWGCWC	2 cut(s)	45, 502
Alw26I	GTCTC	5 cut(s)	29, 396, 565, 707, 894
AlwI	GGATC	3 cut(s)	653, 1006, 1019
AlwNI	CAGNNNCTG	1 cut(s)	430
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	6 cut(s)	55, 102, 132, 530, 594, 819
ApeKI	GCWGC	5 cut(s)	94, 400, 424, 622, 748
AspLEI	GCGC	4 cut(s)	380, 868, 874, 880
AspS9I	GGNCC	5 cut(s)	10, 56, 118, 530, 776
AsuC2I	CCSGG	2 cut(s)	479, 885
AsuHPI	GGTGA	2 cut(s)	555, 599
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	3 cut(s)	10, 118, 776
BamHI	GGATCC	1 cut(s)	1011
BbsI	GAAGAC	3 cut(s)	446, 498, 976
Bbv12I	GWGCWC	2 cut(s)	45, 502
BbvCI	CCTCAGC	2 cut(s)	411, 417
BbvI	GCAGC	5 cut(s)	106, 412, 436, 634, 735
BceAI	ACGGC	1 cut(s)	97
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	2 cut(s)	479, 885
BcoDI	GTCTC	5 cut(s)	29, 396, 565, 707, 894
BfaI	CTAG	2 cut(s)	110, 917
BfmI	CTRYAG	1 cut(s)	897
BisI	GCNGC	8 cut(s)	95, 362, 398, 401, 422, 425, 623, 749
BlpI	GCTNAGC	1 cut(s)	381
BlsI	GCNGC	8 cut(s)	96, 363, 399, 402, 423, 426, 624, 750
Bme1390I	CCNGG	3 cut(s)	479, 534, 885
Bme18I	GGWCC	3 cut(s)	10, 118, 776
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	5 cut(s)	10, 56, 118, 530, 776
BmiI	GGNNCC	3 cut(s)	514, 531, 1013
BmrFI	CCNGG	3 cut(s)	479, 534, 885
BmrI	ACTGGG	1 cut(s)	292
BmsI	GCATC	3 cut(s)	373, 682, 939
BmuI	ACTGGG	1 cut(s)	292
BpiI	GAAGAC	3 cut(s)	446, 498, 976
Bpu10I	CCTNAGC	3 cut(s)	411, 417, 567
Bpu1102I	GCTNAGC	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	593
BpuMI	CCSGG	2 cut(s)	479, 885
BsaHI	GRCGYC	3 cut(s)	5, 66, 84
BsaI	GGTCTC	1 cut(s)	894
BsaJI	CCNNGG	6 cut(s)	444, 477, 533, 602, 772, 884
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 509, 603, 899, 961
Bse118I	RCCGGY	2 cut(s)	134, 592
Bse1I	ACTGG	1 cut(s)	298
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	6 cut(s)	444, 477, 533, 602, 772, 884
BseGI	GGATG	1 cut(s)	470
BseLI	CCNNNNNNNGG	5 cut(s)	111, 509, 603, 899, 961
BseMII	CTCAG	9 cut(s)	395, 401, 407, 425, 431, 558, 600, 825, 951
BseNI	ACTGG	1 cut(s)	298
BseRI	GAGGAG	1 cut(s)	155
BseXI	GCAGC	5 cut(s)	106, 412, 436, 634, 735
BseYI	CCCAGC	1 cut(s)	405
Bsh1236I	CGCG	2 cut(s)	147, 378
BshFI	GGCC	6 cut(s)	57, 104, 134, 532, 596, 821
BsiHKAI	GWGCWC	2 cut(s)	45, 502
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	135, 479, 593, 884
BslI	CCNNNNNNNGG	5 cut(s)	111, 509, 603, 899, 961
BsmAI	GTCTC	5 cut(s)	29, 396, 565, 707, 894
BsnI	GGCC	6 cut(s)	57, 104, 134, 532, 596, 821
Bso31I	GGTCTC	1 cut(s)	894
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	45, 502
Bsp143I	GATC	3 cut(s)	153, 658, 1011
Bsp1720I	GCTNAGC	1 cut(s)	381
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	8 cut(s)	23, 169, 353, 359, 362, 398, 422, 474
BspANI	GGCC	6 cut(s)	57, 104, 134, 532, 596, 821
BspCNI	CTCAG	9 cut(s)	394, 400, 406, 424, 430, 559, 601, 826, 952
BspFNI	CGCG	2 cut(s)	147, 378
BspLI	GGNNCC	3 cut(s)	514, 531, 1013
BspPI	GGATC	3 cut(s)	653, 1006, 1019
BspTNI	GGTCTC	1 cut(s)	894
BsrFI	RCCGGY	2 cut(s)	134, 592
BsrI	ACTGG	1 cut(s)	298
BssAI	RCCGGY	2 cut(s)	134, 592
BssECI	CCNNGG	6 cut(s)	444, 477, 533, 602, 772, 884
BssMI	GATC	3 cut(s)	153, 658, 1011
BssNI	GRCGYC	3 cut(s)	5, 66, 84
BssT1I	CCWWGG	1 cut(s)	772
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	4 cut(s)	40, 722, 898, 1001
Bst6I	CTCTTC	1 cut(s)	517
BstACI	GRCGYC	3 cut(s)	5, 66, 84
BstAPI	GCANNNNNTGC	1 cut(s)	430
BstC8I	GCNNGC	3 cut(s)	136, 870, 876
BstDEI	CTNAG	9 cut(s)	381, 387, 393, 411, 417, 567, 609, 834, 960
BstENI	CCTNNNNNAGG	2 cut(s)	601, 959
BstF5I	GGATG	1 cut(s)	470
BstFNI	CGCG	2 cut(s)	147, 378
BstHHI	GCGC	4 cut(s)	380, 868, 874, 880
BstKTI	GATC	3 cut(s)	156, 661, 1014
BstMAI	GTCTC	5 cut(s)	29, 396, 565, 707, 894
BstMBI	GATC	3 cut(s)	153, 658, 1011
BstMWI	GCNNNNNNNGC	7 cut(s)	144, 215, 361, 367, 406, 421, 430
BstNI	CCWGG	1 cut(s)	534
BstNSI	RCATGY	1 cut(s)	733
BstSCI	CCNGG	3 cut(s)	477, 532, 883
BstSFI	CTRYAG	1 cut(s)	897
BstUI	CGCG	2 cut(s)	147, 378
BstV1I	GCAGC	5 cut(s)	106, 412, 436, 634, 735
BstV2I	GAAGAC	3 cut(s)	446, 498, 976
BstX2I	RGATCY	2 cut(s)	658, 1011
BstYI	RGATCY	2 cut(s)	658, 1011
BsuRI	GGCC	6 cut(s)	57, 104, 134, 532, 596, 821
BtsCI	GGATG	1 cut(s)	470
BtsIMutI	CAGTG	1 cut(s)	894
BtuMI	TCGCGA	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	136, 870, 876
CaiI	CAGNNNCTG	1 cut(s)	430
CfoI	GCGC	4 cut(s)	380, 868, 874, 880
Cfr10I	RCCGGY	2 cut(s)	134, 592
Cfr13I	GGNCC	5 cut(s)	10, 56, 118, 530, 776
CseI	GACGC	1 cut(s)	73
Csp6I	GTAC	1 cut(s)	723
CspCI	CAANNNNNGTGG	2 cut(s)	535, 570
CviAII	CATG	1 cut(s)	730
CviQI	GTAC	1 cut(s)	723
DdeI	CTNAG	9 cut(s)	381, 387, 393, 411, 417, 567, 609, 834, 960
DpnI	GATC	3 cut(s)	155, 660, 1013
DpnII	GATC	3 cut(s)	153, 658, 1011
Eam1104I	CTCTTC	1 cut(s)	517
EarI	CTCTTC	1 cut(s)	517
EciI	GGCGGA	2 cut(s)	158, 463
Eco130I	CCWWGG	1 cut(s)	772
Eco31I	GGTCTC	1 cut(s)	894
Eco47I	GGWCC	3 cut(s)	10, 118, 776
Eco57I	CTGAAG	1 cut(s)	930
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	2 cut(s)	601, 959
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	1 cut(s)	772
ErhI	CCWWGG	1 cut(s)	772
FaeI	CATG	1 cut(s)	733
FaiI	YATR	7 cut(s)	243, 634, 638, 731, 762, 767, 987
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	1 cut(s)	729
FblI	GTMKAC	1 cut(s)	827
Fnu4HI	GCNGC	8 cut(s)	95, 362, 398, 401, 422, 425, 623, 749
FokI	GGATG	1 cut(s)	457
Fsp4HI	GCNGC	8 cut(s)	95, 362, 398, 401, 422, 425, 623, 749
FspBI	CTAG	2 cut(s)	110, 917
GlaI	GCGC	4 cut(s)	379, 867, 873, 879
GluI	GCNGC	8 cut(s)	95, 362, 398, 401, 422, 425, 623, 749
GsaI	CCCAGC	1 cut(s)	409
HaeIII	GGCC	6 cut(s)	57, 104, 134, 532, 596, 821
HapII	CCGG	4 cut(s)	135, 479, 593, 884
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	4 cut(s)	380, 868, 874, 880
Hin1I	GRCGYC	3 cut(s)	5, 66, 84
Hin1II	CATG	1 cut(s)	733
Hin6I	GCGC	4 cut(s)	378, 866, 872, 878
HinP1I	GCGC	4 cut(s)	378, 866, 872, 878
HincII	GTYRAC	1 cut(s)	997
HindII	GTYRAC	1 cut(s)	997
HpaI	GTTAAC	1 cut(s)	997
HpaII	CCGG	4 cut(s)	135, 479, 593, 884
HphI	GGTGA	2 cut(s)	555, 599
Hpy166II	GTNNAC	4 cut(s)	79, 590, 828, 997
Hpy188I	TCNGA	3 cut(s)	10, 910, 961
Hpy188III	TCNNGA	3 cut(s)	146, 510, 712
Hpy8I	GTNNAC	4 cut(s)	79, 590, 828, 997
Hpy99I	CGWCG	4 cut(s)	10, 68, 71, 89
HpyAV	CCTTC	3 cut(s)	20, 805, 936
HpyCH4III	ACNGT	4 cut(s)	40, 722, 898, 1001
HpyCH4IV	ACGT	1 cut(s)	66
HpyF10VI	GCNNNNNNNGC	7 cut(s)	144, 215, 361, 367, 406, 421, 430
HpyF3I	CTNAG	9 cut(s)	381, 387, 393, 411, 417, 567, 609, 834, 960
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	3 cut(s)	5, 66, 84
Hsp92II	CATG	1 cut(s)	733
HspAI	GCGC	4 cut(s)	378, 866, 872, 878
KroI	GCCGGC	1 cut(s)	134
KroNI	GCCGGC	1 cut(s)	136
KspAI	GTTAAC	1 cut(s)	997
Kzo9I	GATC	3 cut(s)	153, 658, 1011
LmnI	GCTCC	4 cut(s)	48, 469, 505, 957
Lsp1109I	GCAGC	5 cut(s)	106, 412, 436, 634, 735
LweI	GCATC	3 cut(s)	373, 682, 939
MaeI	CTAG	2 cut(s)	110, 917
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	1 cut(s)	686
MalI	GATC	3 cut(s)	155, 660, 1013
MboI	GATC	3 cut(s)	153, 658, 1011
MboII	GAAGA	4 cut(s)	451, 498, 534, 981
MflI	RGATCY	2 cut(s)	658, 1011
MhlI	GDGCHC	2 cut(s)	45, 502
MluCI	AATT	4 cut(s)	18, 272, 287, 681
MmeI	TCCRAC	1 cut(s)	96
MroNI	GCCGGC	1 cut(s)	134
MseI	TTAA	3 cut(s)	543, 996, 1018
MspI	CCGG	4 cut(s)	135, 479, 593, 884
MspR9I	CCNGG	3 cut(s)	479, 534, 885
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	2 cut(s)	147, 378
MwoI	GCNNNNNNNGC	7 cut(s)	144, 215, 361, 367, 406, 421, 430
NaeI	GCCGGC	1 cut(s)	136
NciI	CCSGG	2 cut(s)	479, 885
NdeII	GATC	3 cut(s)	153, 658, 1011
NgoMIV	GCCGGC	1 cut(s)	134
NlaIII	CATG	1 cut(s)	733
NlaIV	GGNNCC	3 cut(s)	514, 531, 1013
NmeAIII	GCCGAG	1 cut(s)	627
NmuCI	GTSAC	1 cut(s)	686
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	733
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	729
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PdiI	GCCGGC	1 cut(s)	136
PkrI	GCNGC	8 cut(s)	96, 363, 399, 402, 423, 426, 624, 750
PscI	ACATGT	1 cut(s)	729
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	405
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	514, 531, 1013
PspPI	GGNCC	5 cut(s)	10, 56, 118, 530, 776
PspXI	VCTCGAGB	1 cut(s)	98
PstNI	CAGNNNCTG	1 cut(s)	430
PsuI	RGATCY	2 cut(s)	658, 1011
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	724
RsaNI	GTAC	1 cut(s)	723
SaqAI	TTAA	3 cut(s)	543, 996, 1018
SatI	GCNGC	8 cut(s)	95, 362, 398, 401, 422, 425, 623, 749
Sau3AI	GATC	3 cut(s)	153, 658, 1011
Sau96I	GGNCC	5 cut(s)	10, 56, 118, 530, 776
ScrFI	CCNGG	3 cut(s)	479, 534, 885
SduI	GDGCHC	2 cut(s)	45, 502
SfaNI	GCATC	3 cut(s)	373, 682, 939
SfcI	CTRYAG	1 cut(s)	897
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	3 cut(s)	10, 118, 776
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	98, 572
SmoI	CTYRAG	2 cut(s)	98, 572
Sse9I	AATT	4 cut(s)	18, 272, 287, 681
SsiI	CCGC	8 cut(s)	23, 169, 353, 359, 362, 398, 422, 474
SspMI	CTAG	2 cut(s)	110, 917
StyD4I	CCNGG	3 cut(s)	477, 532, 883
StyI	CCWWGG	1 cut(s)	772
TaaI	ACNGT	4 cut(s)	40, 722, 898, 1001
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	3 cut(s)	99, 156, 711
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	4 cut(s)	18, 272, 287, 681
TatI	WGTACW	1 cut(s)	722
TauI	GCSGC	3 cut(s)	364, 400, 424
Tru1I	TTAA	3 cut(s)	543, 996, 1018
Tru9I	TTAA	3 cut(s)	543, 996, 1018
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	1 cut(s)	686
TseI	GCWGC	5 cut(s)	94, 400, 424, 622, 748
Tsp45I	GTSAC	1 cut(s)	686
TspDTI	ATGAA	2 cut(s)	130, 755
TspGWI	ACGGA	3 cut(s)	35, 64, 492
TspRI	CASTG	1 cut(s)	901
VpaK11BI	GGWCC	3 cut(s)	10, 118, 776
XagI	CCTNNNNNAGG	2 cut(s)	601, 959
XceI	RCATGY	1 cut(s)	733
XcmI	CCANNNNNNNNNTGG	1 cut(s)	112
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	827
XspI	CTAG	2 cut(s)	110, 917
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.