MD05G1358100.v1.1

Upstream activation factor subunit

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Forward (+)
47350737 .. 47354375
3639 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1358100.v1.1.491

Sequence Viewer

Length: 1101 bp
ATGGCGTCGGACCAAGAAATTGCGGAAGGTGTGGAGACTGTGCTCCGTCAATCAGGCCCTAACGACGTCGCCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCCGGCTTCATTCGCGACCAGATCAACTTCCTCCTCCGCCCCTACGCCCAACCCCCAAAAGCCCATTTTGCCTTCCATTACAACCCCAACCCCCACAGCCACCACCCCCACAACCAGCACCCTCAATTCCTCCCCCAACAATTCCCTCCCCATTTTGCCCTCCAACCGCACCACCTCGCCACCGAACCCCACAGCTTCCACCCACCGCCACCGCCGCATCAGCAACTACGCCCTCAGCCTCAGCCTCAGTCGCAGCCGCAGCCTCTGCCTGTGAAGACCGAGGCTTTCCCCCAAAATGCTCCCACATCCGCCCCGGAAACCCCCAAAGAGAGTGCTCCGTCTTCTGGAACCAAGAGAAGAGGGGGGCCAGGGGGTCTTAACAAAGTCTGTGGTGTCTCACCTGAGCTTGAGGCTGTTGTTGGTGAACCGGCCTTGCCGAGGACTGAGATTGTGAAGCAGCTCTGGGCATACATAAGGAAAAACAACCTCCAAGATCCAACTAATAAGAGAAAGATAATTTGTGATGATGCCTTGCGTGTGGTATTCGAGACAGACTGTACTGACATGTTCAAAATGAATAAGCTGCTATCTAAACATATTATACCCCTTGAACCTAACAAAGAGCCAAGTCAAGCTAAACGATTGAAGGTAGAGGCCAAGTCTACAACTGAGAGTACTCAACCTCAACCTCAACCTCAACCACAAGCGCAAGCGCAACCGGGGTCCCCCACTGTAGGAATATCTGAAGCACTAGCTAACTTTTTGGGCTTTGGAGGAAGGGAGATGCTCCTATCTGAGGCAAGAAGACTTCTTTGGGAGTATGTAAAGGTTAACCGTTTGGAGGATCCTTCAAATTCTACAGTGATATTATGTGACGCAAAGCTCCACAAACTTCTTGGCTGCGAAAGCATTTCTGCTTTGGGGATACACGAGATGTTAGATCGCTATCATTTATTCAAGCAATCATGA

Protein Analysis

367

Amino Acids

40.69

Weight (kDa)

8.22

Isoelectric Point (pI)

68.2

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 3 - 53 1.1e-10 DEK C terminal domain
SWIB PF02201 174 - 244 7.4e-29 SWIB/MDM2 domain
SWIB PF02201 289 - 360 1.7e-15 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22360
fragaria_vesca FvH4_3g00950
malus_domestica MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis pycom05g32390
rosa_chinensis RchiOBHm_Chr5g0001471
rosa_laevigata RLG00000030931
rosa_multiflora Rmu_sc0003749.1_g000011
rosa_roxburghii Rroxscaffold_1G00074920
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana Rw5G001080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 69
AccI GTMKAC 1 cut(s) 794
AccII CGCG 1 cut(s) 147
AciI CCGC 8 cut(s) 23, 169, 299, 338, 344, 347, 389, 441
AclWI GGATC 3 cut(s) 620, 971, 984
AcsI RAATTY 1 cut(s) 985
AcuI CTGAAG 1 cut(s) 897
AcyI GRCGYC 3 cut(s) 5, 66, 84
AfaI GTAC 2 cut(s) 691, 808
AfiI CCNNNNNNNGG 6 cut(s) 111, 476, 570, 866, 928, 973
AflIII ACRYGT 1 cut(s) 696
AgsI TTSAA 5 cut(s) 703, 743, 778, 984, 1090
AjnI CCWGG 1 cut(s) 499
AjuI GAANNNNNNNTTGG 2 cut(s) 928, 960
AluBI AGCT 9 cut(s) 97, 109, 327, 538, 592, 715, 767, 887, 1015
AluI AGCT 9 cut(s) 97, 109, 327, 538, 592, 715, 767, 887, 1015
Alw21I GWGCWC 2 cut(s) 45, 469
Alw26I GTCTC 3 cut(s) 29, 532, 674
AlwI GGATC 3 cut(s) 620, 971, 984
AlwNI CAGNNNCTG 1 cut(s) 397
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 6 cut(s) 55, 102, 132, 497, 561, 786
ApeKI GCWGC 6 cut(s) 94, 385, 391, 589, 715, 1032
ApoI RAATTY 1 cut(s) 985
AspLEI GCGC 2 cut(s) 841, 847
AspS9I GGNCC 5 cut(s) 10, 56, 118, 497, 855
AsuC2I CCSGG 2 cut(s) 446, 852
AsuHPI GGTGA 2 cut(s) 522, 566
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 3 cut(s) 10, 118, 855
BamHI GGATCC 1 cut(s) 976
BauI CACGAG 1 cut(s) 1061
BbsI GAAGAC 3 cut(s) 413, 465, 943
Bbv12I GWGCWC 2 cut(s) 45, 469
BbvCI CCTCAGC 2 cut(s) 366, 372
BbvI GCAGC 6 cut(s) 106, 397, 403, 601, 702, 1019
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 1 cut(s) 501
BciVI GTATCC 1 cut(s) 1050
BcnI CCSGG 2 cut(s) 446, 852
BcoDI GTCTC 3 cut(s) 29, 532, 674
BfaI CTAG 2 cut(s) 110, 884
BfmI CTRYAG 2 cut(s) 864, 990
BfuI GTATCC 1 cut(s) 1050
BisI GCNGC 8 cut(s) 95, 347, 386, 389, 392, 590, 716, 1033
BlsI GCNGC 8 cut(s) 96, 348, 387, 390, 393, 591, 717, 1034
BmcAI AGTACT 1 cut(s) 808
Bme1390I CCNGG 3 cut(s) 446, 501, 852
Bme18I GGWCC 3 cut(s) 10, 118, 855
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 5 cut(s) 10, 56, 118, 497, 855
BmiI GGNNCC 5 cut(s) 481, 498, 856, 857, 978
BmrFI CCNGG 3 cut(s) 446, 501, 852
BmsI GCATC 3 cut(s) 358, 649, 906
BpiI GAAGAC 3 cut(s) 413, 465, 943
Bpu10I CCTNAGC 3 cut(s) 366, 372, 534
BpuEI CTTGAG 1 cut(s) 560
BpuMI CCSGG 2 cut(s) 446, 852
BsaBI GATNNNNATC 1 cut(s) 1077
BsaHI GRCGYC 3 cut(s) 5, 66, 84
BsaJI CCNNGG 5 cut(s) 411, 444, 500, 569, 851
BsaXI ACNNNNNCTCC 2 cut(s) 56, 86
Bsc4I CCNNNNNNNGG 6 cut(s) 111, 476, 570, 866, 928, 973
Bse118I RCCGGY 2 cut(s) 134, 559
Bse8I GATNNNNATC 1 cut(s) 1077
BseBI CCWGG 1 cut(s) 501
BseDI CCNNGG 5 cut(s) 411, 444, 500, 569, 851
BseGI GGATG 1 cut(s) 437
BseJI GATNNNNATC 1 cut(s) 1077
BseLI CCNNNNNNNGG 6 cut(s) 111, 476, 570, 866, 928, 973
BseMII CTCAG 7 cut(s) 380, 386, 392, 525, 567, 792, 918
BseRI GAGGAG 1 cut(s) 155
BseXI GCAGC 6 cut(s) 106, 397, 403, 601, 702, 1019
Bsh1236I CGCG 1 cut(s) 147
BshFI GGCC 6 cut(s) 57, 104, 134, 499, 563, 788
BsiHKAI GWGCWC 2 cut(s) 45, 469
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 4 cut(s) 135, 446, 560, 851
BslFI GGGAC 1 cut(s) 841
BslI CCNNNNNNNGG 6 cut(s) 111, 476, 570, 866, 928, 973
BsmAI GTCTC 3 cut(s) 29, 532, 674
BsmFI GGGAC 1 cut(s) 841
BsnI GGCC 6 cut(s) 57, 104, 134, 499, 563, 788
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 2 cut(s) 45, 469
Bsp143I GATC 4 cut(s) 153, 625, 976, 1072
Bsp68I TCGCGA 1 cut(s) 147
BspACI CCGC 8 cut(s) 23, 169, 299, 338, 344, 347, 389, 441
BspANI GGCC 6 cut(s) 57, 104, 134, 499, 563, 788
BspCNI CTCAG 7 cut(s) 379, 385, 391, 526, 568, 793, 919
BspFNI CGCG 1 cut(s) 147
BspHI TCATGA 1 cut(s) 1097
BspLI GGNNCC 5 cut(s) 481, 498, 856, 857, 978
BspPI GGATC 3 cut(s) 620, 971, 984
BsrFI RCCGGY 2 cut(s) 134, 559
BssAI RCCGGY 2 cut(s) 134, 559
BssECI CCNNGG 5 cut(s) 411, 444, 500, 569, 851
BssMI GATC 4 cut(s) 153, 625, 976, 1072
BssNI GRCGYC 3 cut(s) 5, 66, 84
BssSI CACGAG 1 cut(s) 1061
Bst2BI CACGAG 1 cut(s) 1061
Bst2UI CCWGG 1 cut(s) 501
Bst4CI ACNGT 5 cut(s) 40, 689, 865, 968, 994
Bst6I CTCTTC 1 cut(s) 484
BstACI GRCGYC 3 cut(s) 5, 66, 84
BstAPI GCANNNNNTGC 1 cut(s) 397
BstC8I GCNNGC 2 cut(s) 136, 843
BstDEI CTNAG 7 cut(s) 366, 372, 378, 534, 576, 801, 927
BstENI CCTNNNNNAGG 2 cut(s) 568, 926
BstF5I GGATG 1 cut(s) 437
BstFNI CGCG 1 cut(s) 147
BstHHI GCGC 2 cut(s) 841, 847
BstKTI GATC 4 cut(s) 156, 628, 979, 1075
BstMAI GTCTC 3 cut(s) 29, 532, 674
BstMBI GATC 4 cut(s) 153, 625, 976, 1072
BstMWI GCNNNNNNNGC 8 cut(s) 144, 200, 346, 352, 382, 391, 397, 1038
BstNI CCWGG 1 cut(s) 501
BstNSI RCATGY 1 cut(s) 700
BstSCI CCNGG 3 cut(s) 444, 499, 850
BstSFI CTRYAG 2 cut(s) 864, 990
BstUI CGCG 1 cut(s) 147
BstV1I GCAGC 6 cut(s) 106, 397, 403, 601, 702, 1019
BstV2I GAAGAC 3 cut(s) 413, 465, 943
BstX2I RGATCY 2 cut(s) 625, 976
BstYI RGATCY 2 cut(s) 625, 976
BsuI GTATCC 1 cut(s) 1050
BsuRI GGCC 6 cut(s) 57, 104, 134, 499, 563, 788
BtsCI GGATG 1 cut(s) 437
BtsIMutI CAGTG 2 cut(s) 861, 999
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 2 cut(s) 136, 843
CaiI CAGNNNCTG 1 cut(s) 397
CciI TCATGA 1 cut(s) 1097
CfoI GCGC 2 cut(s) 841, 847
Cfr10I RCCGGY 2 cut(s) 134, 559
Cfr13I GGNCC 5 cut(s) 10, 56, 118, 497, 855
CseI GACGC 2 cut(s) 73, 1016
Csp6I GTAC 2 cut(s) 690, 807
CspCI CAANNNNNGTGG 2 cut(s) 502, 537
CviAII CATG 2 cut(s) 697, 1098
CviQI GTAC 2 cut(s) 690, 807
DdeI CTNAG 7 cut(s) 366, 372, 378, 534, 576, 801, 927
DpnI GATC 4 cut(s) 155, 627, 978, 1074
DpnII GATC 4 cut(s) 153, 625, 976, 1072
Eam1104I CTCTTC 1 cut(s) 484
EarI CTCTTC 1 cut(s) 484
EciI GGCGGA 2 cut(s) 158, 430
Eco47I GGWCC 3 cut(s) 10, 118, 855
Eco57I CTGAAG 1 cut(s) 897
Eco88I CYCGRG 1 cut(s) 98
EcoNI CCTNNNNNAGG 2 cut(s) 568, 926
EcoO109I RGGNCCY 2 cut(s) 56, 855
EcoRII CCWGG 1 cut(s) 499
FaeI CATG 2 cut(s) 700, 1101
FaiI YATR 8 cut(s) 601, 605, 698, 729, 734, 954, 1003, 1099
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FaqI GGGAC 1 cut(s) 841
FatI CATG 2 cut(s) 696, 1097
FblI GTMKAC 1 cut(s) 794
Fnu4HI GCNGC 8 cut(s) 95, 347, 386, 389, 392, 590, 716, 1033
FokI GGATG 1 cut(s) 424
Fsp4HI GCNGC 8 cut(s) 95, 347, 386, 389, 392, 590, 716, 1033
FspBI CTAG 2 cut(s) 110, 884
GlaI GCGC 2 cut(s) 840, 846
GluI GCNGC 8 cut(s) 95, 347, 386, 389, 392, 590, 716, 1033
HaeIII GGCC 6 cut(s) 57, 104, 134, 499, 563, 788
HapII CCGG 4 cut(s) 135, 446, 560, 851
HgaI GACGC 2 cut(s) 73, 1016
HhaI GCGC 2 cut(s) 841, 847
Hin1I GRCGYC 3 cut(s) 5, 66, 84
Hin1II CATG 2 cut(s) 700, 1101
Hin6I GCGC 2 cut(s) 839, 845
HinP1I GCGC 2 cut(s) 839, 845
HincII GTYRAC 1 cut(s) 964
HindII GTYRAC 1 cut(s) 964
HpaI GTTAAC 1 cut(s) 964
HpaII CCGG 4 cut(s) 135, 446, 560, 851
HphI GGTGA 2 cut(s) 522, 566
Hpy166II GTNNAC 4 cut(s) 79, 557, 795, 964
Hpy188I TCNGA 3 cut(s) 10, 877, 928
Hpy188III TCNNGA 4 cut(s) 146, 477, 679, 1098
Hpy8I GTNNAC 4 cut(s) 79, 557, 795, 964
Hpy99I CGWCG 4 cut(s) 10, 68, 71, 89
HpyAV CCTTC 5 cut(s) 20, 214, 772, 903, 990
HpyCH4III ACNGT 5 cut(s) 40, 689, 865, 968, 994
HpyCH4IV ACGT 1 cut(s) 66
HpyF10VI GCNNNNNNNGC 8 cut(s) 144, 200, 346, 352, 382, 391, 397, 1038
HpyF3I CTNAG 7 cut(s) 366, 372, 378, 534, 576, 801, 927
HpySE526I ACGT 1 cut(s) 66
Hsp92I GRCGYC 3 cut(s) 5, 66, 84
Hsp92II CATG 2 cut(s) 700, 1101
HspAI GCGC 2 cut(s) 839, 845
KflI GGGWCCC 1 cut(s) 855
KroI GCCGGC 1 cut(s) 134
KroNI GCCGGC 1 cut(s) 136
KspAI GTTAAC 1 cut(s) 964
Kzo9I GATC 4 cut(s) 153, 625, 976, 1072
LmnI GCTCC 5 cut(s) 48, 436, 472, 924, 1020
Lsp1109I GCAGC 6 cut(s) 106, 397, 403, 601, 702, 1019
LweI GCATC 3 cut(s) 358, 649, 906
MaeI CTAG 2 cut(s) 110, 884
MaeII ACGT 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 1004
MalI GATC 4 cut(s) 155, 627, 978, 1074
MboI GATC 4 cut(s) 153, 625, 976, 1072
MboII GAAGA 4 cut(s) 418, 465, 501, 948
MflI RGATCY 2 cut(s) 625, 976
MhlI GDGCHC 2 cut(s) 45, 469
MluCI AATT 5 cut(s) 18, 257, 272, 648, 985
MmeI TCCRAC 3 cut(s) 96, 319, 653
MroNI GCCGGC 1 cut(s) 134
MseI TTAA 2 cut(s) 510, 963
MspI CCGG 4 cut(s) 135, 446, 560, 851
MspR9I CCNGG 3 cut(s) 446, 501, 852
MvaI CCWGG 1 cut(s) 501
MvnI CGCG 1 cut(s) 147
MwoI GCNNNNNNNGC 8 cut(s) 144, 200, 346, 352, 382, 391, 397, 1038
NaeI GCCGGC 1 cut(s) 136
NciI CCSGG 2 cut(s) 446, 852
NdeII GATC 4 cut(s) 153, 625, 976, 1072
NgoMIV GCCGGC 1 cut(s) 134
NlaIII CATG 2 cut(s) 700, 1101
NlaIV GGNNCC 5 cut(s) 481, 498, 856, 857, 978
NmeAIII GCCGAG 1 cut(s) 594
NmuCI GTSAC 1 cut(s) 1004
NruI TCGCGA 1 cut(s) 147
NspI RCATGY 1 cut(s) 700
PaeR7I CTCGAG 1 cut(s) 98
PagI TCATGA 1 cut(s) 1097
PciI ACATGT 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PdiI GCCGGC 1 cut(s) 136
PkrI GCNGC 8 cut(s) 96, 348, 387, 390, 393, 591, 717, 1034
PpuMI RGGWCCY 1 cut(s) 855
PscI ACATGT 1 cut(s) 696
Psp5II RGGWCCY 1 cut(s) 855
Psp6I CCWGG 1 cut(s) 499
PspGI CCWGG 1 cut(s) 499
PspN4I GGNNCC 5 cut(s) 481, 498, 856, 857, 978
PspPI GGNCC 5 cut(s) 10, 56, 118, 497, 855
PspPPI RGGWCCY 1 cut(s) 855
PspXI VCTCGAGB 1 cut(s) 98
PstNI CAGNNNCTG 1 cut(s) 397
PsuI RGATCY 2 cut(s) 625, 976
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 2 cut(s) 691, 808
RsaNI GTAC 2 cut(s) 690, 807
SaqAI TTAA 2 cut(s) 510, 963
SatI GCNGC 8 cut(s) 95, 347, 386, 389, 392, 590, 716, 1033
Sau3AI GATC 4 cut(s) 153, 625, 976, 1072
Sau96I GGNCC 5 cut(s) 10, 56, 118, 497, 855
ScaI AGTACT 1 cut(s) 808
ScrFI CCNGG 3 cut(s) 446, 501, 852
SduI GDGCHC 2 cut(s) 45, 469
SfaNI GCATC 3 cut(s) 358, 649, 906
SfcI CTRYAG 2 cut(s) 864, 990
Sfr274I CTCGAG 1 cut(s) 98
SinI GGWCC 3 cut(s) 10, 118, 855
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 2 cut(s) 98, 539
SmoI CTYRAG 2 cut(s) 98, 539
Sse9I AATT 5 cut(s) 18, 257, 272, 648, 985
SsiI CCGC 8 cut(s) 23, 169, 299, 338, 344, 347, 389, 441
SspMI CTAG 2 cut(s) 110, 884
StyD4I CCNGG 3 cut(s) 444, 499, 850
TaaI ACNGT 5 cut(s) 40, 689, 865, 968, 994
TaiI ACGT 1 cut(s) 69
TaqI TCGA 2 cut(s) 99, 678
TaqII GACCGA 1 cut(s) 425
TasI AATT 5 cut(s) 18, 257, 272, 648, 985
TatI WGTACW 2 cut(s) 689, 806
TauI GCSGC 2 cut(s) 349, 391
Tru1I TTAA 2 cut(s) 510, 963
Tru9I TTAA 2 cut(s) 510, 963
TscAI CASTG 2 cut(s) 868, 999
TseFI GTSAC 1 cut(s) 1004
TseI GCWGC 6 cut(s) 94, 385, 391, 589, 715, 1032
Tsp45I GTSAC 1 cut(s) 1004
TspDTI ATGAA 2 cut(s) 130, 722
TspGWI ACGGA 3 cut(s) 35, 64, 459
TspRI CASTG 2 cut(s) 868, 999
VpaK11BI GGWCC 3 cut(s) 10, 118, 855
XagI CCTNNNNNAGG 2 cut(s) 568, 926
XapI RAATTY 1 cut(s) 985
XceI RCATGY 1 cut(s) 700
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 1025
XhoI CTCGAG 1 cut(s) 98
XmiI GTMKAC 1 cut(s) 794
XspI CTAG 2 cut(s) 110, 884
ZraI GACGTC 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 808
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.