Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Reverse (-)

1038953 .. 1041902

Gene Structure 2950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG013900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1113 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACAAGGCCCTAACAACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTAGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAGCTTCCTCCTCCGCCCATATCCCCAGCACCAACAACAACAACAACAACCCCAACCGCCCCCACCAAAAGACCGTTTTGCCCTCCACCACAACCCTTACCACCACCACCCTCAGTTCGCTCCCACACCATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGCCCTCCCCCTGAGGCCTACACCTTCCAGGCGCAGCAGCCGCCTCAGCAGCAGCCGCCTCAGCAGCAGCTCCGGCATCCGGTGGCCCAGCCGCAGCAGCAGCCGCCTCCCAAGTTCGAGGTCTTCGCCGCCCAGAATGCCACCGCCGTCGCCCCGGAACCGCCCAAAGACAGTGCTCCGACTACTGGAACCAAAAGAAAGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCTCACCTGAGCTTCAGGTTGTTGTTGGTGAACCGGCTTTGCCAAGGACTGAGATTGTGAAGCAGCTCTGGGCATATATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCCTTGCGCGTGGTATTTGAGACTGATTGTACGGACATGTTCAAGATGAATAAGCTGCTGTCCAAGCATATAATAACCCTTGGACCTAAAAAGGAGCCAACTCAAGCAAAGCGAGTGAAGTTAGATGCTGAGTCTGCAACTGACACTGATGGTACTCAACCTGGTTCCTCTACTGTTACAATATCTGATGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTCAAATCTGAGGCAATAAGACTTGTTTGGGAATATGTAAAGGCTAACAATTTGGAGGATCCTGTAAATTCTATGGTGATTGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGAAAGCATATCTGCTCTGGGGGTTCAAGAGATGTTAGACCGCTATCATTTCATCAAAAAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

370

Amino Acids

41.25

Weight (kDa)

8.19

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.6e-12	DEK C terminal domain
SWIB	PF02201	188 - 258	1.5e-28	SWIB/MDM2 domain
SWIB	PF02201	293 - 364	1.3e-17	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 711
AclWI	GGATC	4 cut(s)	662, 983, 996, 1013
AcsI	RAATTY	1 cut(s)	997
AcuI	CTGAAG	1 cut(s)	566
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	733, 856
AfiI	CCNNNNNNNGG	3 cut(s)	111, 412, 518
AflIII	ACRYGT	1 cut(s)	738
AgsI	TTSAA	2 cut(s)	745, 1073
AjnI	CCWGG	2 cut(s)	360, 862
Alw21I	GWGCWC	2 cut(s)	45, 511
Alw26I	GTCTC	3 cut(s)	29, 574, 716
AlwI	GGATC	4 cut(s)	662, 983, 996, 1013
AoxI	GGCC	4 cut(s)	55, 102, 348, 417
ApoI	RAATTY	1 cut(s)	997
AspLEI	GCGC	2 cut(s)	367, 711
AspS9I	GGNCC	5 cut(s)	10, 56, 118, 418, 785
AsuC2I	CCSGG	1 cut(s)	488
AsuHPI	GGTGA	4 cut(s)	61, 564, 608, 1018
AvaII	GGWCC	3 cut(s)	10, 118, 785
AxyI	CCTNAGG	1 cut(s)	345
BamHI	GGATCC	1 cut(s)	988
BbsI	GAAGAC	1 cut(s)	448
Bbv12I	GWGCWC	2 cut(s)	45, 511
BbvCI	CCTCAGC	2 cut(s)	378, 393
BccI	CCATC	1 cut(s)	845
BceAI	ACGGC	2 cut(s)	97, 464
BciT130I	CCWGG	2 cut(s)	362, 864
BcnI	CCSGG	1 cut(s)	488
BcoDI	GTCTC	3 cut(s)	29, 574, 716
BfaI	CTAG	3 cut(s)	98, 110, 896
Bme1390I	CCNGG	3 cut(s)	362, 488, 864
Bme18I	GGWCC	3 cut(s)	10, 118, 785
BmgT120I	GGNCC	5 cut(s)	10, 56, 118, 418, 785
BmiI	GGNNCC	5 cut(s)	492, 523, 798, 868, 990
BmrFI	CCNGG	3 cut(s)	362, 488, 864
BmsI	GCATC	6 cut(s)	418, 691, 817, 880, 918, 1034
BpiI	GAAGAC	1 cut(s)	448
Bpu10I	CCTNAGC	3 cut(s)	378, 393, 576
BpuEI	CTTGAG	1 cut(s)	789
BpuMI	CCSGG	1 cut(s)	488
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	486, 611, 781
BsaWI	WCCGGW	1 cut(s)	412
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 273, 303, 314, 344
Bsc4I	CCNNNNNNNGG	3 cut(s)	111, 412, 518
Bse118I	RCCGGY	1 cut(s)	601
Bse1I	ACTGG	1 cut(s)	523
Bse21I	CCTNAGG	1 cut(s)	345
BseBI	CCWGG	2 cut(s)	362, 864
BseDI	CCNNGG	3 cut(s)	486, 611, 781
BseGI	GGATG	2 cut(s)	409, 1049
BseLI	CCNNNNNNNGG	3 cut(s)	111, 412, 518
BseMII	CTCAG	8 cut(s)	281, 336, 392, 407, 567, 609, 822, 930
BseNI	ACTGG	1 cut(s)	523
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	3 cut(s)	180, 420, 542
Bsh1236I	CGCG	2 cut(s)	147, 711
BshFI	GGCC	4 cut(s)	57, 104, 350, 419
BsiHKAI	GWGCWC	2 cut(s)	45, 511
BsiSI	CCGG	4 cut(s)	406, 413, 488, 602
BslI	CCNNNNNNNGG	3 cut(s)	111, 412, 518
BsmAI	GTCTC	3 cut(s)	29, 574, 716
BsmI	GAATGC	1 cut(s)	475
BsnI	GGCC	4 cut(s)	57, 104, 350, 419
Bsp1286I	GDGCHC	2 cut(s)	45, 511
Bsp143I	GATC	4 cut(s)	153, 667, 988, 1018
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	4 cut(s)	57, 104, 350, 419
BspCNI	CTCAG	8 cut(s)	280, 337, 391, 406, 568, 610, 823, 931
BspFNI	CGCG	2 cut(s)	147, 711
BspHI	TCATGA	1 cut(s)	1109
BspLI	GGNNCC	5 cut(s)	492, 523, 798, 868, 990
BspPI	GGATC	4 cut(s)	662, 983, 996, 1013
BsrFI	RCCGGY	1 cut(s)	601
BsrI	ACTGG	1 cut(s)	523
BssAI	RCCGGY	1 cut(s)	601
BssECI	CCNNGG	3 cut(s)	486, 611, 781
BssMI	GATC	4 cut(s)	153, 667, 988, 1018
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	611, 781
Bst2UI	CCWGG	2 cut(s)	362, 864
Bst4CI	ACNGT	4 cut(s)	40, 230, 506, 877
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	9 cut(s)	267, 345, 378, 393, 576, 618, 831, 900, 939
BstF5I	GGATG	2 cut(s)	409, 1049
BstFNI	CGCG	2 cut(s)	147, 711
BstHHI	GCGC	2 cut(s)	367, 711
BstKTI	GATC	4 cut(s)	156, 670, 991, 1021
BstMAI	GTCTC	3 cut(s)	29, 574, 716
BstMBI	GATC	4 cut(s)	153, 667, 988, 1018
BstNI	CCWGG	2 cut(s)	362, 864
BstNSI	RCATGY	1 cut(s)	742
BstSCI	CCNGG	3 cut(s)	360, 486, 862
BstUI	CGCG	2 cut(s)	147, 711
BstV2I	GAAGAC	1 cut(s)	448
BstX2I	RGATCY	2 cut(s)	667, 988
BstYI	RGATCY	2 cut(s)	667, 988
Bsu36I	CCTNAGG	1 cut(s)	345
BsuRI	GGCC	4 cut(s)	57, 104, 350, 419
BtsCI	GGATG	2 cut(s)	409, 1049
BtsIMutI	CAGTG	2 cut(s)	511, 846
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1109
CfoI	GCGC	2 cut(s)	367, 711
Cfr10I	RCCGGY	1 cut(s)	601
Cfr13I	GGNCC	5 cut(s)	10, 56, 118, 418, 785
CseI	GACGC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	862
Csp6I	GTAC	2 cut(s)	732, 855
CviAII	CATG	3 cut(s)	739, 1031, 1110
CviQI	GTAC	2 cut(s)	732, 855
DdeI	CTNAG	9 cut(s)	267, 345, 378, 393, 576, 618, 831, 900, 939
DpnI	GATC	4 cut(s)	155, 669, 990, 1020
DpnII	GATC	4 cut(s)	153, 667, 988, 1018
DraI	TTTAAA	1 cut(s)	552
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	611, 781
Eco147I	AGGCCT	1 cut(s)	350
Eco47I	GGWCC	3 cut(s)	10, 118, 785
Eco57I	CTGAAG	1 cut(s)	566
Eco81I	CCTNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	360, 862
EcoT14I	CCWWGG	2 cut(s)	611, 781
ErhI	CCWWGG	2 cut(s)	611, 781
FaeI	CATG	3 cut(s)	742, 1034, 1113
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	738, 1030, 1109
FauI	CCCGC	1 cut(s)	341
FokI	GGATG	2 cut(s)	396, 1056
FspBI	CTAG	3 cut(s)	98, 110, 896
GlaI	GCGC	2 cut(s)	366, 710
GsaI	CCCAGC	3 cut(s)	184, 424, 546
HaeIII	GGCC	4 cut(s)	57, 104, 350, 419
HapII	CCGG	4 cut(s)	406, 413, 488, 602
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	367, 711
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	742, 1034, 1113
Hin6I	GCGC	2 cut(s)	365, 709
HinP1I	GCGC	2 cut(s)	365, 709
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	833
HpaII	CCGG	4 cut(s)	406, 413, 488, 602
HphI	GGTGA	4 cut(s)	61, 564, 608, 1018
Hpy166II	GTNNAC	3 cut(s)	50, 79, 599
Hpy188I	TCNGA	4 cut(s)	10, 513, 889, 940
Hpy188III	TCNNGA	4 cut(s)	146, 745, 1073, 1110
Hpy8I	GTNNAC	3 cut(s)	50, 79, 599
Hpy99I	CGWCG	2 cut(s)	89, 485
HpyAV	CCTTC	5 cut(s)	20, 148, 315, 367, 911
HpyCH4III	ACNGT	4 cut(s)	40, 230, 506, 877
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	2 cut(s)	839, 893
HpyF3I	CTNAG	9 cut(s)	267, 345, 378, 393, 576, 618, 831, 900, 939
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	742, 1034, 1113
HspAI	GCGC	2 cut(s)	365, 709
Kzo9I	GATC	4 cut(s)	153, 667, 988, 1018
LmnI	GCTCC	6 cut(s)	48, 280, 408, 514, 796, 1032
LweI	GCATC	6 cut(s)	418, 691, 817, 880, 918, 1034
MabI	ACCWGGT	1 cut(s)	862
MaeI	CTAG	3 cut(s)	98, 110, 896
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 877
MalI	GATC	4 cut(s)	155, 669, 990, 1020
MboI	GATC	4 cut(s)	153, 667, 988, 1018
MboII	GAAGA	1 cut(s)	448
MflI	RGATCY	2 cut(s)	667, 988
MhlI	GDGCHC	2 cut(s)	45, 511
MluCI	AATT	3 cut(s)	299, 979, 997
MlyI	GAGTC	1 cut(s)	842
MmeI	TCCRAC	2 cut(s)	96, 536
MseI	TTAA	1 cut(s)	551
MspI	CCGG	4 cut(s)	406, 413, 488, 602
MspR9I	CCNGG	3 cut(s)	362, 488, 864
Mva1269I	GAATGC	1 cut(s)	475
MvaI	CCWGG	2 cut(s)	362, 864
MvnI	CGCG	2 cut(s)	147, 711
NciI	CCSGG	1 cut(s)	488
NdeII	GATC	4 cut(s)	153, 667, 988, 1018
NlaIII	CATG	3 cut(s)	742, 1034, 1113
NlaIV	GGNNCC	5 cut(s)	492, 523, 798, 868, 990
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	742
PagI	TCATGA	1 cut(s)	1109
PceI	AGGCCT	1 cut(s)	350
PciI	ACATGT	1 cut(s)	738
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	475
PleI	GAGTC	1 cut(s)	841
PpsI	GAGTC	1 cut(s)	841
PscI	ACATGT	1 cut(s)	738
Psp6I	CCWGG	2 cut(s)	360, 862
PspFI	CCCAGC	3 cut(s)	180, 420, 542
PspGI	CCWGG	2 cut(s)	360, 862
PspN4I	GGNNCC	5 cut(s)	492, 523, 798, 868, 990
PspPI	GGNCC	5 cut(s)	10, 56, 118, 418, 785
PsuI	RGATCY	2 cut(s)	667, 988
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	2 cut(s)	733, 856
RsaNI	GTAC	2 cut(s)	732, 855
SaqAI	TTAA	1 cut(s)	551
Sau3AI	GATC	4 cut(s)	153, 667, 988, 1018
Sau96I	GGNCC	5 cut(s)	10, 56, 118, 418, 785
SchI	GAGTC	1 cut(s)	842
ScrFI	CCNGG	3 cut(s)	362, 488, 864
SduI	GDGCHC	2 cut(s)	45, 511
SexAI	ACCWGGT	1 cut(s)	862
SfaNI	GCATC	6 cut(s)	418, 691, 817, 880, 918, 1034
SinI	GGWCC	3 cut(s)	10, 118, 785
SmlI	CTYRAG	1 cut(s)	804
SmoI	CTYRAG	1 cut(s)	804
Sse9I	AATT	3 cut(s)	299, 979, 997
SseBI	AGGCCT	1 cut(s)	350
SspMI	CTAG	3 cut(s)	98, 110, 896
StuI	AGGCCT	1 cut(s)	350
StyD4I	CCNGG	3 cut(s)	360, 486, 862
StyI	CCWWGG	2 cut(s)	611, 781
TaaI	ACNGT	4 cut(s)	40, 230, 506, 877
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	1 cut(s)	450
TasI	AATT	3 cut(s)	299, 979, 997
TauI	GCSGC	5 cut(s)	376, 391, 427, 439, 464
Tru1I	TTAA	1 cut(s)	551
Tru9I	TTAA	1 cut(s)	551
TscAI	CASTG	2 cut(s)	511, 853
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	130, 764, 1087
TspGWI	ACGGA	3 cut(s)	35, 64, 749
TspRI	CASTG	2 cut(s)	511, 853
VpaK11BI	GGWCC	3 cut(s)	10, 118, 785
XapI	RAATTY	1 cut(s)	997
XceI	RCATGY	1 cut(s)	742
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1037
XspI	CTAG	3 cut(s)	98, 110, 896

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.