Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Reverse (-)

921373 .. 924335

Gene Structure 2963 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G001080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACAAGGCCCTAACAACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAGCTTCCTCCTCCGCCCCTATCCCCAGCAACAACAACCCCAACCGCCCCCACCAAAAGACCATTTTGCCCTCCACCACAACCCTTACCACCACCACCCTCAGTTCGCCCCCACACCATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGCCCTCCCCCTGAGGCCTACACCTTCCAGGCGCAGCAGCCGCCTCAGCAGCAGCTCCGGCATCCGGTGGCCCAGCCGCAGCAGCCGCCTCCCAAGTTCGAGGTCTTCGCCCCCCAGAATGCCACCGCCGTCGCCCCGGAACCGCCCAAAGACAGTGCTCCGACTACTGGAACCAAAAGAAGGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCTCACCTGAGCTTCAGGTTGTTGTTGGTGAACCGGCCTTGCCAAGGACCGAGATTGTGAAGCAGCTCTGGGCATATATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCCTTGCGCGTGGTATTTGAGACTGATTGTACTGACATGTTCAAGATGAATAAGCTGCTCTCCAAGCATATAATAACCCTTGGACCTAAAAAGGAGCCAACTCAAGCTAAGCGAGTAAAGTTAGATGCTGAGTCTGCAACTGACACTGATAGTACTCAACCTGGTTCCTCTACTGTTACAATATCTGAAGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTCAAATCTGAGGCAATAAGACTTGTTTGGGAATATGTAAAGGCTAACAATTTGGAGGATCCTGTAAATTCTATGGTGATTGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGACAGCATATCTGCTCTGGGGGTTCAAGAGATGTTAGACCGCTATCATTTCATCAAACAGTCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

360

Amino Acids

40.09

Weight (kDa)

7.24

Isoelectric Point (pI)

60.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.4e-12	DEK C terminal domain
SWIB	PF02201	178 - 248	1.5e-28	SWIB/MDM2 domain
SWIB	PF02201	283 - 354	7.5e-18	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	147, 681
AciI	CCGC	9 cut(s)	169, 200, 322, 362, 398, 407, 447, 464, 1057
AclWI	GGATC	4 cut(s)	632, 953, 966, 983
AcsI	RAATTY	1 cut(s)	967
AcuI	CTGAAG	2 cut(s)	536, 879
AcyI	GRCGYC	1 cut(s)	84
AfaI	GTAC	2 cut(s)	703, 826
AfiI	CCNNNNNNNGG	5 cut(s)	111, 385, 488, 501, 582
AflIII	ACRYGT	1 cut(s)	708
AgsI	TTSAA	2 cut(s)	715, 1043
AjnI	CCWGG	2 cut(s)	348, 832
Alw21I	GWGCWC	2 cut(s)	45, 481
Alw26I	GTCTC	3 cut(s)	29, 544, 686
AlwI	GGATC	4 cut(s)	632, 953, 966, 983
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	5 cut(s)	55, 102, 336, 390, 573
ApoI	RAATTY	1 cut(s)	967
AspLEI	GCGC	2 cut(s)	355, 681
AspS9I	GGNCC	6 cut(s)	10, 56, 118, 391, 585, 755
AsuC2I	CCSGG	1 cut(s)	458
AsuHPI	GGTGA	4 cut(s)	61, 534, 578, 988
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	4 cut(s)	10, 118, 585, 755
AxyI	CCTNAGG	1 cut(s)	333
BamHI	GGATCC	1 cut(s)	958
BbsI	GAAGAC	1 cut(s)	418
Bbv12I	GWGCWC	2 cut(s)	45, 481
BbvCI	CCTCAGC	1 cut(s)	366
BceAI	ACGGC	2 cut(s)	97, 434
BciT130I	CCWGG	2 cut(s)	350, 834
BcnI	CCSGG	1 cut(s)	458
BcoDI	GTCTC	3 cut(s)	29, 544, 686
BfaI	CTAG	2 cut(s)	110, 866
BlpI	GCTNAGC	1 cut(s)	780
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	350, 458, 834
Bme18I	GGWCC	4 cut(s)	10, 118, 585, 755
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	6 cut(s)	10, 56, 118, 391, 585, 755
BmiI	GGNNCC	5 cut(s)	462, 493, 768, 838, 960
BmrFI	CCNGG	3 cut(s)	350, 458, 834
BmsI	GCATC	5 cut(s)	391, 661, 787, 888, 1004
BpiI	GAAGAC	1 cut(s)	418
Bpu10I	CCTNAGC	2 cut(s)	366, 546
Bpu1102I	GCTNAGC	1 cut(s)	780
BpuEI	CTTGAG	1 cut(s)	759
BpuMI	CCSGG	1 cut(s)	458
BsaHI	GRCGYC	1 cut(s)	84
BsaJI	CCNNGG	3 cut(s)	456, 581, 751
BsaWI	WCCGGW	1 cut(s)	385
BsaXI	ACNNNNNCTCC	6 cut(s)	56, 86, 261, 291, 302, 332
Bsc4I	CCNNNNNNNGG	5 cut(s)	111, 385, 488, 501, 582
Bse118I	RCCGGY	1 cut(s)	571
Bse1I	ACTGG	1 cut(s)	493
Bse21I	CCTNAGG	1 cut(s)	333
BseBI	CCWGG	2 cut(s)	350, 834
BseDI	CCNNGG	3 cut(s)	456, 581, 751
BseGI	GGATG	2 cut(s)	382, 1019
BseLI	CCNNNNNNNGG	5 cut(s)	111, 385, 488, 501, 582
BseMII	CTCAG	6 cut(s)	269, 324, 380, 537, 792, 900
BseNI	ACTGG	1 cut(s)	493
BseRI	GAGGAG	1 cut(s)	155
BseYI	CCCAGC	3 cut(s)	180, 393, 512
Bsh1236I	CGCG	2 cut(s)	147, 681
BshFI	GGCC	5 cut(s)	57, 104, 338, 392, 575
BsiHKAI	GWGCWC	2 cut(s)	45, 481
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	4 cut(s)	379, 386, 458, 572
BslI	CCNNNNNNNGG	5 cut(s)	111, 385, 488, 501, 582
BsmAI	GTCTC	3 cut(s)	29, 544, 686
BsmI	GAATGC	1 cut(s)	445
BsnI	GGCC	5 cut(s)	57, 104, 338, 392, 575
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	45, 481
Bsp143I	GATC	4 cut(s)	153, 637, 958, 988
Bsp1720I	GCTNAGC	1 cut(s)	780
Bsp68I	TCGCGA	1 cut(s)	147
BspACI	CCGC	9 cut(s)	169, 200, 322, 362, 398, 407, 447, 464, 1057
BspANI	GGCC	5 cut(s)	57, 104, 338, 392, 575
BspCNI	CTCAG	6 cut(s)	268, 325, 379, 538, 793, 901
BspFNI	CGCG	2 cut(s)	147, 681
BspHI	TCATGA	1 cut(s)	1079
BspLI	GGNNCC	5 cut(s)	462, 493, 768, 838, 960
BspPI	GGATC	4 cut(s)	632, 953, 966, 983
BsrFI	RCCGGY	1 cut(s)	571
BsrI	ACTGG	1 cut(s)	493
BssAI	RCCGGY	1 cut(s)	571
BssECI	CCNNGG	3 cut(s)	456, 581, 751
BssMI	GATC	4 cut(s)	153, 637, 958, 988
BssNI	GRCGYC	1 cut(s)	84
BssT1I	CCWWGG	2 cut(s)	581, 751
Bst2UI	CCWGG	2 cut(s)	350, 834
Bst4CI	ACNGT	4 cut(s)	40, 476, 847, 1077
BstACI	GRCGYC	1 cut(s)	84
BstDEI	CTNAG	8 cut(s)	255, 333, 366, 546, 780, 801, 870, 909
BstENI	CCTNNNNNAGG	1 cut(s)	580
BstF5I	GGATG	2 cut(s)	382, 1019
BstFNI	CGCG	2 cut(s)	147, 681
BstHHI	GCGC	2 cut(s)	355, 681
BstKTI	GATC	4 cut(s)	156, 640, 961, 991
BstMAI	GTCTC	3 cut(s)	29, 544, 686
BstMBI	GATC	4 cut(s)	153, 637, 958, 988
BstMWI	GCNNNNNNNGC	9 cut(s)	361, 367, 370, 379, 403, 406, 736, 806, 1003
BstNI	CCWGG	2 cut(s)	350, 834
BstNSI	RCATGY	1 cut(s)	712
BstSCI	CCNGG	3 cut(s)	348, 456, 832
BstUI	CGCG	2 cut(s)	147, 681
BstV2I	GAAGAC	1 cut(s)	418
BstX2I	RGATCY	2 cut(s)	637, 958
BstYI	RGATCY	2 cut(s)	637, 958
Bsu36I	CCTNAGG	1 cut(s)	333
BsuRI	GGCC	5 cut(s)	57, 104, 338, 392, 575
BtsCI	GGATG	2 cut(s)	382, 1019
BtsIMutI	CAGTG	2 cut(s)	481, 816
BtuMI	TCGCGA	1 cut(s)	147
CciI	TCATGA	1 cut(s)	1079
CfoI	GCGC	2 cut(s)	355, 681
Cfr10I	RCCGGY	1 cut(s)	571
Cfr13I	GGNCC	6 cut(s)	10, 56, 118, 391, 585, 755
CseI	GACGC	1 cut(s)	73
CsiI	ACCWGGT	1 cut(s)	832
Csp6I	GTAC	2 cut(s)	702, 825
CviAII	CATG	3 cut(s)	709, 1001, 1080
CviQI	GTAC	2 cut(s)	702, 825
DdeI	CTNAG	8 cut(s)	255, 333, 366, 546, 780, 801, 870, 909
DpnI	GATC	4 cut(s)	155, 639, 960, 990
DpnII	GATC	4 cut(s)	153, 637, 958, 988
DraI	TTTAAA	1 cut(s)	522
EciI	GGCGGA	1 cut(s)	158
Eco130I	CCWWGG	2 cut(s)	581, 751
Eco147I	AGGCCT	1 cut(s)	338
Eco47I	GGWCC	4 cut(s)	10, 118, 585, 755
Eco57I	CTGAAG	2 cut(s)	536, 879
Eco81I	CCTNAGG	1 cut(s)	333
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	580
EcoO109I	RGGNCCY	1 cut(s)	56
EcoRII	CCWGG	2 cut(s)	348, 832
EcoT14I	CCWWGG	2 cut(s)	581, 751
ErhI	CCWWGG	2 cut(s)	581, 751
FaeI	CATG	3 cut(s)	712, 1004, 1083
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FatI	CATG	3 cut(s)	708, 1000, 1079
FauI	CCCGC	1 cut(s)	329
FokI	GGATG	2 cut(s)	369, 1026
FspBI	CTAG	2 cut(s)	110, 866
GlaI	GCGC	2 cut(s)	354, 680
GsaI	CCCAGC	3 cut(s)	184, 397, 516
HaeIII	GGCC	5 cut(s)	57, 104, 338, 392, 575
HapII	CCGG	4 cut(s)	379, 386, 458, 572
HgaI	GACGC	1 cut(s)	73
HhaI	GCGC	2 cut(s)	355, 681
Hin1I	GRCGYC	1 cut(s)	84
Hin1II	CATG	3 cut(s)	712, 1004, 1083
Hin6I	GCGC	2 cut(s)	353, 679
HinP1I	GCGC	2 cut(s)	353, 679
HincII	GTYRAC	1 cut(s)	50
HindII	GTYRAC	1 cut(s)	50
HinfI	GANTC	1 cut(s)	803
HpaII	CCGG	4 cut(s)	379, 386, 458, 572
HphI	GGTGA	4 cut(s)	61, 534, 578, 988
Hpy166II	GTNNAC	3 cut(s)	50, 79, 569
Hpy188I	TCNGA	4 cut(s)	10, 483, 859, 910
Hpy188III	TCNNGA	4 cut(s)	146, 715, 1043, 1080
Hpy8I	GTNNAC	3 cut(s)	50, 79, 569
Hpy99I	CGWCG	2 cut(s)	89, 455
HpyAV	CCTTC	6 cut(s)	20, 148, 303, 355, 495, 881
HpyCH4III	ACNGT	4 cut(s)	40, 476, 847, 1077
HpyCH4IV	ACGT	1 cut(s)	66
HpyCH4V	TGCA	1 cut(s)	809
HpyF10VI	GCNNNNNNNGC	9 cut(s)	361, 367, 370, 379, 403, 406, 736, 806, 1003
HpyF3I	CTNAG	8 cut(s)	255, 333, 366, 546, 780, 801, 870, 909
HpySE526I	ACGT	1 cut(s)	66
Hsp92I	GRCGYC	1 cut(s)	84
Hsp92II	CATG	3 cut(s)	712, 1004, 1083
HspAI	GCGC	2 cut(s)	353, 679
Kzo9I	GATC	4 cut(s)	153, 637, 958, 988
LmnI	GCTCC	5 cut(s)	48, 381, 484, 766, 1002
LweI	GCATC	5 cut(s)	391, 661, 787, 888, 1004
MabI	ACCWGGT	1 cut(s)	832
MaeI	CTAG	2 cut(s)	110, 866
MaeII	ACGT	1 cut(s)	66
MaeIII	GTNAC	2 cut(s)	67, 847
MalI	GATC	4 cut(s)	155, 639, 960, 990
MboI	GATC	4 cut(s)	153, 637, 958, 988
MboII	GAAGA	1 cut(s)	418
MflI	RGATCY	2 cut(s)	637, 958
MhlI	GDGCHC	2 cut(s)	45, 481
MluCI	AATT	3 cut(s)	287, 949, 967
MlyI	GAGTC	1 cut(s)	812
MmeI	TCCRAC	2 cut(s)	96, 506
MseI	TTAA	1 cut(s)	521
MspI	CCGG	4 cut(s)	379, 386, 458, 572
MspR9I	CCNGG	3 cut(s)	350, 458, 834
Mva1269I	GAATGC	1 cut(s)	445
MvaI	CCWGG	2 cut(s)	350, 834
MvnI	CGCG	2 cut(s)	147, 681
MwoI	GCNNNNNNNGC	9 cut(s)	361, 367, 370, 379, 403, 406, 736, 806, 1003
NciI	CCSGG	1 cut(s)	458
NdeII	GATC	4 cut(s)	153, 637, 958, 988
NlaIII	CATG	3 cut(s)	712, 1004, 1083
NlaIV	GGNNCC	5 cut(s)	462, 493, 768, 838, 960
NmuCI	GTSAC	1 cut(s)	67
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	712
PaeR7I	CTCGAG	1 cut(s)	98
PagI	TCATGA	1 cut(s)	1079
PceI	AGGCCT	1 cut(s)	338
PciI	ACATGT	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PctI	GAATGC	1 cut(s)	445
PleI	GAGTC	1 cut(s)	811
PpsI	GAGTC	1 cut(s)	811
PscI	ACATGT	1 cut(s)	708
Psp6I	CCWGG	2 cut(s)	348, 832
PspFI	CCCAGC	3 cut(s)	180, 393, 512
PspGI	CCWGG	2 cut(s)	348, 832
PspN4I	GGNNCC	5 cut(s)	462, 493, 768, 838, 960
PspPI	GGNCC	6 cut(s)	10, 56, 118, 391, 585, 755
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	2 cut(s)	637, 958
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	2 cut(s)	703, 826
RsaNI	GTAC	2 cut(s)	702, 825
SaqAI	TTAA	1 cut(s)	521
Sau3AI	GATC	4 cut(s)	153, 637, 958, 988
Sau96I	GGNCC	6 cut(s)	10, 56, 118, 391, 585, 755
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	1 cut(s)	812
ScrFI	CCNGG	3 cut(s)	350, 458, 834
SduI	GDGCHC	2 cut(s)	45, 481
SexAI	ACCWGGT	1 cut(s)	832
SfaNI	GCATC	5 cut(s)	391, 661, 787, 888, 1004
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	4 cut(s)	10, 118, 585, 755
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	2 cut(s)	98, 774
SmoI	CTYRAG	2 cut(s)	98, 774
Sse9I	AATT	3 cut(s)	287, 949, 967
SseBI	AGGCCT	1 cut(s)	338
SsiI	CCGC	9 cut(s)	169, 200, 322, 362, 398, 407, 447, 464, 1057
SspMI	CTAG	2 cut(s)	110, 866
StuI	AGGCCT	1 cut(s)	338
StyD4I	CCNGG	3 cut(s)	348, 456, 832
StyI	CCWWGG	2 cut(s)	581, 751
TaaI	ACNGT	4 cut(s)	40, 476, 847, 1077
TaiI	ACGT	1 cut(s)	69
TaqI	TCGA	2 cut(s)	99, 420
TaqII	GACCGA	1 cut(s)	602
TasI	AATT	3 cut(s)	287, 949, 967
TatI	WGTACW	2 cut(s)	701, 824
TauI	GCSGC	3 cut(s)	364, 400, 409
Tru1I	TTAA	1 cut(s)	521
Tru9I	TTAA	1 cut(s)	521
TscAI	CASTG	2 cut(s)	481, 823
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	3 cut(s)	130, 734, 1057
TspGWI	ACGGA	2 cut(s)	35, 64
TspRI	CASTG	2 cut(s)	481, 823
VpaK11BI	GGWCC	4 cut(s)	10, 118, 585, 755
XagI	CCTNNNNNAGG	1 cut(s)	580
XapI	RAATTY	1 cut(s)	967
XceI	RCATGY	1 cut(s)	712
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1007
XhoI	CTCGAG	1 cut(s)	98
XspI	CTAG	2 cut(s)	110, 866
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.