Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0014457

Physical Location & Seq

Genomic Coordinates Forward (+)

40957530 .. 40960562

Gene Structure 3033 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1332000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGGTGTCGGACCAAGAAATAGCCGAAGCTGTGGAGACTGTGCTCCGTCAATCAGGCCCTAACGACGTCGCCTCCGTAAACGCCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTCTCTCACAAGGCTGCCTTTATTCGCGACCAGATCAACTTCCTCCTCCGCCCCTTCGCCCAACCGCCGCAACCCCCCAAAGACCATTTTGCCCTACATTACAACCTCAACCCCCACCACCACAACCACCCTCACAACCTCCCCCACAACCACCATCCTCAATTCCTCCCCCAACAATTCCCTACCCATTTTGCCCTCCACCCCCACCACCGCGCCCCCGAACCCCACAACTTCCACCCGCCGCCGCCGCCGCATCAGCAACTACGCCCTCAGACTCAGCAACTACGCCCTCAGCCTCAGTCACAGCCTCAGCCTCCGCCTCCGCCTGTGAAGACCGAGGCTTTCCCCCAAAATGCCCCCACAGCCGCCCCGGAAACGCCCAAAGAGAGTGCTCCATCTTCTGGAACCAAGAGAAGAGGAGGGCCAGGGGGGCTTAACAAAGTCTGTGGTGTCACACCTGAGCTTCAGGCTGTTGTTGGTGAACCGGCCTTGGCGAGGACTGAGATTGTGAAGCAGCTCTGGGCATACATAAGGAAAAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCCTTACGTGTGGTATTCGAGACAGACTGTACCGACATGTTCAAAATGAATAAGCTGCTATCCAAACATATTATACCCCTTGAACCTAACAAGGAGTCAAGTCAAGCTAAACGATTGAAGGTAGAGGCCAAGTCTACAACTGAGAATACTGAACCTCAACCACAACTGCAACCGCAACCGCAACCGCAACCAGGGTCCCTTACTGTAGGAATATCTGAAGCACTAGCTAAGTTTTTGGGCTTTGGAGGAAGTGAGATGCTCCTATCTGAGGCAACAAGACTTGTTTGGGAGTATGTAAAGGTTAACCGTTTGGAGGATCCTCTAAATTCTACGGTGATATTATGTGACGCAAAGCTCCACGAGCTTCTTGGATGCGAAAGCATTTCTGCTGCGGGGATGCACGAGATCTTAGATCGGTATCATTTATTCAAACAATTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000120 GO:0000500 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005667 GO:0005730 GO:0006355 GO:0006356 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044452 GO:0044464 GO:0044798 GO:0045893 GO:0045935 GO:0045943 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0070013 GO:0080090 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEK_C SWIB

Protein Analysis

382

Amino Acids

42.55

Weight (kDa)

7.38

Isoelectric Point (pI)

70.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEK_C	PF08766	2 - 53	4.3e-12	DEK C terminal domain
SWIB	PF02201	189 - 259	3.5e-28	SWIB/MDM2 domain
SWIB	PF02201	305 - 375	1.2e-15	SWIB/MDM2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014457)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G22360
fragaria_vesca	FvH4_3g00950
malus_domestica	MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica	Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis	pycom05g32390
rosa_chinensis	RchiOBHm_Chr5g0001471
rosa_laevigata	RLG00000030931
rosa_multiflora	Rmu_sc0003749.1_g000011
rosa_roxburghii	Rroxscaffold_1G00074920
rosa_rugosa	Rorug04G0390500
rosa_samantha	Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana	Rw5G001080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	69
AccB7I	CCANNNNNTGG	1 cut(s)	521
AccI	GTMKAC	1 cut(s)	839
AccII	CGCG	2 cut(s)	147, 333
AclWI	GGATC	3 cut(s)	665, 1016, 1029
AcsI	RAATTY	1 cut(s)	1030
AcuI	CTGAAG	2 cut(s)	569, 942
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	736
AfiI	CCNNNNNNNGG	6 cut(s)	111, 521, 615, 896, 973, 1018
AflIII	ACRYGT	2 cut(s)	712, 741
AgsI	TTSAA	4 cut(s)	748, 788, 823, 1135
AjnI	CCWGG	2 cut(s)	544, 895
Alw21I	GWGCWC	2 cut(s)	45, 514
Alw26I	GTCTC	2 cut(s)	29, 719
AlwI	GGATC	3 cut(s)	665, 1016, 1029
Ama87I	CYCGRG	1 cut(s)	98
AoxI	GGCC	5 cut(s)	55, 102, 542, 606, 831
ApeKI	GCWGC	5 cut(s)	94, 134, 634, 760, 1094
ApoI	RAATTY	1 cut(s)	1030
AspLEI	GCGC	1 cut(s)	335
AspS9I	GGNCC	5 cut(s)	10, 56, 118, 542, 900
AsuC2I	CCSGG	1 cut(s)	491
AsuHPI	GGTGA	2 cut(s)	611, 1051
AvaI	CYCGRG	1 cut(s)	98
AvaII	GGWCC	3 cut(s)	10, 118, 900
BamHI	GGATCC	1 cut(s)	1021
BauI	CACGAG	2 cut(s)	1064, 1106
BbsI	GAAGAC	1 cut(s)	458
Bbv12I	GWGCWC	2 cut(s)	45, 514
BbvCI	CCTCAGC	2 cut(s)	411, 429
BbvI	GCAGC	5 cut(s)	106, 121, 646, 747, 1081
BccI	CCATC	2 cut(s)	282, 523
BceAI	ACGGC	1 cut(s)	68
BciT130I	CCWGG	2 cut(s)	546, 897
BcnI	CCSGG	1 cut(s)	491
BcoDI	GTCTC	2 cut(s)	29, 719
BfaI	CTAG	2 cut(s)	110, 929
BfmI	CTRYAG	1 cut(s)	909
BglI	GCCNNNNNGGC	1 cut(s)	550
BglII	AGATCT	1 cut(s)	1110
Bme1390I	CCNGG	3 cut(s)	491, 546, 897
Bme18I	GGWCC	3 cut(s)	10, 118, 900
BmeT110I	CYCGRG	1 cut(s)	98
BmgT120I	GGNCC	5 cut(s)	10, 56, 118, 542, 900
BmiI	GGNNCC	4 cut(s)	526, 901, 902, 1023
BmrFI	CCNGG	3 cut(s)	491, 546, 897
BmsI	GCATC	5 cut(s)	382, 694, 951, 1067, 1092
BpiI	GAAGAC	1 cut(s)	458
Bpu10I	CCTNAGC	3 cut(s)	411, 429, 579
BpuMI	CCSGG	1 cut(s)	491
BsaAI	YACGTR	1 cut(s)	713
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaHI	GRCGYC	1 cut(s)	66
BsaJI	CCNNGG	5 cut(s)	456, 489, 545, 609, 896
BsaXI	ACNNNNNCTCC	2 cut(s)	56, 86
Bsc4I	CCNNNNNNNGG	6 cut(s)	111, 521, 615, 896, 973, 1018
Bse118I	RCCGGY	1 cut(s)	604
Bse8I	GATNNNNATC	1 cut(s)	1122
BseBI	CCWGG	2 cut(s)	546, 897
BseDI	CCNNGG	5 cut(s)	456, 489, 545, 609, 896
BseGI	GGATG	3 cut(s)	274, 1082, 1107
BseJI	GATNNNNATC	1 cut(s)	1122
BseLI	CCNNNNNNNGG	6 cut(s)	111, 521, 615, 896, 973, 1018
BseMII	CTCAG	9 cut(s)	404, 410, 425, 431, 443, 570, 612, 837, 963
BseRI	GAGGAG	2 cut(s)	155, 552
BseXI	GCAGC	5 cut(s)	106, 121, 646, 747, 1081
Bsh1236I	CGCG	2 cut(s)	147, 333
BshFI	GGCC	5 cut(s)	57, 104, 544, 608, 833
BsiHKAI	GWGCWC	2 cut(s)	45, 514
BsiHKCI	CYCGRG	1 cut(s)	98
BsiSI	CCGG	2 cut(s)	491, 605
BslFI	GGGAC	1 cut(s)	886
BslI	CCNNNNNNNGG	6 cut(s)	111, 521, 615, 896, 973, 1018
BsmAI	GTCTC	2 cut(s)	29, 719
BsmFI	GGGAC	1 cut(s)	886
BsnI	GGCC	5 cut(s)	57, 104, 544, 608, 833
BsoBI	CYCGRG	1 cut(s)	98
Bsp1286I	GDGCHC	2 cut(s)	45, 514
Bsp143I	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
Bsp68I	TCGCGA	1 cut(s)	147
BspANI	GGCC	5 cut(s)	57, 104, 544, 608, 833
BspCNI	CTCAG	9 cut(s)	403, 409, 424, 430, 442, 571, 613, 838, 964
BspFNI	CGCG	2 cut(s)	147, 333
BspLI	GGNNCC	4 cut(s)	526, 901, 902, 1023
BspPI	GGATC	3 cut(s)	665, 1016, 1029
BsrFI	RCCGGY	1 cut(s)	604
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	5 cut(s)	456, 489, 545, 609, 896
BssMI	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
BssNI	GRCGYC	1 cut(s)	66
BssSI	CACGAG	2 cut(s)	1064, 1106
BssT1I	CCWWGG	1 cut(s)	609
Bst2BI	CACGAG	2 cut(s)	1064, 1106
Bst2UI	CCWGG	2 cut(s)	546, 897
Bst4CI	ACNGT	5 cut(s)	40, 734, 910, 1013, 1039
Bst6I	CTCTTC	1 cut(s)	529
BstACI	GRCGYC	1 cut(s)	66
BstBAI	YACGTR	1 cut(s)	713
BstENI	CCTNNNNNAGG	2 cut(s)	613, 971
BstF5I	GGATG	3 cut(s)	274, 1082, 1107
BstFNI	CGCG	2 cut(s)	147, 333
BstHHI	GCGC	1 cut(s)	335
BstKTI	GATC	5 cut(s)	156, 673, 1024, 1113, 1120
BstMAI	GTCTC	2 cut(s)	29, 719
BstMBI	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
BstMWI	GCNNNNNNNGC	6 cut(s)	367, 370, 376, 482, 550, 1066
BstNI	CCWGG	2 cut(s)	546, 897
BstNSI	RCATGY	1 cut(s)	745
BstSCI	CCNGG	3 cut(s)	489, 544, 895
BstSFI	CTRYAG	1 cut(s)	909
BstUI	CGCG	2 cut(s)	147, 333
BstV1I	GCAGC	5 cut(s)	106, 121, 646, 747, 1081
BstV2I	GAAGAC	1 cut(s)	458
BstX2I	RGATCY	3 cut(s)	670, 1021, 1110
BstYI	RGATCY	3 cut(s)	670, 1021, 1110
BsuRI	GGCC	5 cut(s)	57, 104, 544, 608, 833
BtsCI	GGATG	3 cut(s)	274, 1082, 1107
BtuMI	TCGCGA	1 cut(s)	147
CfoI	GCGC	1 cut(s)	335
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	5 cut(s)	10, 56, 118, 542, 900
CseI	GACGC	1 cut(s)	1061
Csp6I	GTAC	1 cut(s)	735
CspCI	CAANNNNNGTGG	2 cut(s)	547, 582
CviAII	CATG	1 cut(s)	742
CviQI	GTAC	1 cut(s)	735
DpnI	GATC	5 cut(s)	155, 672, 1023, 1112, 1119
DpnII	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
Eam1104I	CTCTTC	1 cut(s)	529
EarI	CTCTTC	1 cut(s)	529
EciI	GGCGGA	3 cut(s)	158, 426, 432
Eco130I	CCWWGG	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	10, 118, 900
Eco57I	CTGAAG	2 cut(s)	569, 942
Eco88I	CYCGRG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	2 cut(s)	613, 971
EcoO109I	RGGNCCY	2 cut(s)	56, 900
EcoRII	CCWGG	2 cut(s)	544, 895
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	1 cut(s)	745
FaiI	YATR	8 cut(s)	646, 650, 743, 774, 779, 999, 1048, 1144
FalI	AAGNNNNNCTT	2 cut(s)	122, 154
FaqI	GGGAC	1 cut(s)	886
FatI	CATG	1 cut(s)	741
FauI	CCCGC	2 cut(s)	366, 1090
FblI	GTMKAC	1 cut(s)	839
FokI	GGATG	3 cut(s)	261, 1089, 1114
FspBI	CTAG	2 cut(s)	110, 929
GlaI	GCGC	1 cut(s)	334
HaeIII	GGCC	5 cut(s)	57, 104, 544, 608, 833
HapII	CCGG	2 cut(s)	491, 605
HgaI	GACGC	1 cut(s)	1061
HhaI	GCGC	1 cut(s)	335
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	1 cut(s)	745
Hin6I	GCGC	1 cut(s)	333
HinP1I	GCGC	1 cut(s)	333
HincII	GTYRAC	1 cut(s)	1009
HindII	GTYRAC	1 cut(s)	1009
HinfI	GANTC	2 cut(s)	394, 800
HpaI	GTTAAC	1 cut(s)	1009
HpaII	CCGG	2 cut(s)	491, 605
HphI	GGTGA	2 cut(s)	611, 1051
Hpy166II	GTNNAC	4 cut(s)	79, 602, 840, 1009
Hpy188I	TCNGA	4 cut(s)	10, 393, 922, 973
Hpy188III	TCNNGA	3 cut(s)	146, 522, 724
Hpy8I	GTNNAC	4 cut(s)	79, 602, 840, 1009
Hpy99I	CGWCG	3 cut(s)	68, 71, 89
HpyAV	CCTTC	2 cut(s)	184, 817
HpyCH4III	ACNGT	5 cut(s)	40, 734, 910, 1013, 1039
HpyCH4IV	ACGT	2 cut(s)	66, 712
HpyCH4V	TGCA	2 cut(s)	874, 1105
HpyF10VI	GCNNNNNNNGC	6 cut(s)	367, 370, 376, 482, 550, 1066
HpySE526I	ACGT	2 cut(s)	66, 712
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	1 cut(s)	745
HspAI	GCGC	1 cut(s)	333
KflI	GGGWCCC	1 cut(s)	900
KspAI	GTTAAC	1 cut(s)	1009
Kzo9I	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
LmnI	GCTCC	4 cut(s)	48, 517, 969, 1065
Lsp1109I	GCAGC	5 cut(s)	106, 121, 646, 747, 1081
LweI	GCATC	5 cut(s)	382, 694, 951, 1067, 1092
MaeI	CTAG	2 cut(s)	110, 929
MaeII	ACGT	2 cut(s)	66, 712
MaeIII	GTNAC	3 cut(s)	420, 571, 1049
MalI	GATC	5 cut(s)	155, 672, 1023, 1112, 1119
MboI	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
MboII	GAAGA	3 cut(s)	463, 510, 546
MflI	RGATCY	3 cut(s)	670, 1021, 1110
MhlI	GDGCHC	2 cut(s)	45, 514
MluCI	AATT	4 cut(s)	281, 296, 1030, 1139
MlyI	GAGTC	2 cut(s)	388, 809
MmeI	TCCRAC	1 cut(s)	96
MseI	TTAA	2 cut(s)	555, 1008
MspI	CCGG	2 cut(s)	491, 605
MspR9I	CCNGG	3 cut(s)	491, 546, 897
MvaI	CCWGG	2 cut(s)	546, 897
MvnI	CGCG	2 cut(s)	147, 333
MwoI	GCNNNNNNNGC	6 cut(s)	367, 370, 376, 482, 550, 1066
NciI	CCSGG	1 cut(s)	491
NdeII	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
NlaIII	CATG	1 cut(s)	745
NlaIV	GGNNCC	4 cut(s)	526, 901, 902, 1023
NmuCI	GTSAC	3 cut(s)	420, 571, 1049
NruI	TCGCGA	1 cut(s)	147
NspI	RCATGY	1 cut(s)	745
PaeR7I	CTCGAG	1 cut(s)	98
PciI	ACATGT	1 cut(s)	741
PcsI	WCGNNNNNNNCGW	1 cut(s)	72
PflMI	CCANNNNNTGG	1 cut(s)	521
PleI	GAGTC	2 cut(s)	388, 808
PpsI	GAGTC	2 cut(s)	388, 808
Ppu21I	YACGTR	1 cut(s)	713
PpuMI	RGGWCCY	1 cut(s)	900
PscI	ACATGT	1 cut(s)	741
Psp5II	RGGWCCY	1 cut(s)	900
Psp6I	CCWGG	2 cut(s)	544, 895
PspGI	CCWGG	2 cut(s)	544, 895
PspN4I	GGNNCC	4 cut(s)	526, 901, 902, 1023
PspPI	GGNCC	5 cut(s)	10, 56, 118, 542, 900
PspPPI	RGGWCCY	1 cut(s)	900
PspXI	VCTCGAGB	1 cut(s)	98
PsuI	RGATCY	3 cut(s)	670, 1021, 1110
RruI	TCGCGA	1 cut(s)	147
RsaI	GTAC	1 cut(s)	736
RsaNI	GTAC	1 cut(s)	735
SaqAI	TTAA	2 cut(s)	555, 1008
Sau3AI	GATC	5 cut(s)	153, 670, 1021, 1110, 1117
Sau96I	GGNCC	5 cut(s)	10, 56, 118, 542, 900
SchI	GAGTC	2 cut(s)	388, 809
ScrFI	CCNGG	3 cut(s)	491, 546, 897
SduI	GDGCHC	2 cut(s)	45, 514
SfaNI	GCATC	5 cut(s)	382, 694, 951, 1067, 1092
SfcI	CTRYAG	1 cut(s)	909
Sfr274I	CTCGAG	1 cut(s)	98
SinI	GGWCC	3 cut(s)	10, 118, 900
SlaI	CTCGAG	1 cut(s)	98
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	4 cut(s)	281, 296, 1030, 1139
SspMI	CTAG	2 cut(s)	110, 929
StyD4I	CCNGG	3 cut(s)	489, 544, 895
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	5 cut(s)	40, 734, 910, 1013, 1039
TaiI	ACGT	2 cut(s)	69, 715
TaqI	TCGA	2 cut(s)	99, 723
TaqII	GACCGA	1 cut(s)	470
TasI	AATT	4 cut(s)	281, 296, 1030, 1139
TauI	GCSGC	6 cut(s)	190, 364, 367, 370, 373, 488
Tru1I	TTAA	2 cut(s)	555, 1008
Tru9I	TTAA	2 cut(s)	555, 1008
TseFI	GTSAC	3 cut(s)	420, 571, 1049
TseI	GCWGC	5 cut(s)	94, 134, 634, 760, 1094
Tsp45I	GTSAC	3 cut(s)	420, 571, 1049
TspDTI	ATGAA	1 cut(s)	767
TspGWI	ACGGA	2 cut(s)	35, 64
Van91I	CCANNNNNTGG	1 cut(s)	521
VpaK11BI	GGWCC	3 cut(s)	10, 118, 900
XagI	CCTNNNNNAGG	2 cut(s)	613, 971
XapI	RAATTY	1 cut(s)	1030
XceI	RCATGY	1 cut(s)	745
XcmI	CCANNNNNNNNNTGG	2 cut(s)	112, 1070
XhoI	CTCGAG	1 cut(s)	98
XmiI	GTMKAC	1 cut(s)	839
XspI	CTAG	2 cut(s)	110, 929
ZraI	GACGTC	1 cut(s)	67

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.