FvH4_3g00950

Upstream activation factor subunit

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
Physical Location & Seq
Reverse (-)
477532 .. 480720
3189 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00950.t1

Sequence Viewer

Length: 1104 bp
ATGGTGTCGGACCAAGAAATAGCCGAAGGGGTGGAGACTGTGCTCCGTCAACGAGGCCCTAACGACGTCACCTCCGTAAACGGCGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTGGACCTTTCCCACAAGGCTGCCTTCATTCGCGACCAGATCAACTTCCTCCTCCGCCCCTACCCCCAACAACAACAACAACAACCCCAACCGCCCCCAAAAGACCATTTTGCCCTCCACCCCAGCCACAACCCTTACCACCCCCATCACCTCCACCCTCAATTCGCTCAGGCACAATTCCTCCCCCAACAATTTCCTTCCCATTTTGCCCTCCACCCCCACTCCCGTCCTCCCCCTCCTCCTGAGGCCTACACCTTCCAGGCGCCGCCGCCTCAGCAGCTTCGCCATCCGGTGGTCCAGCCGCAGCAGCCGGCTCCCAAGTTTGAGGTCGTCTTCCCCGCACAGAATGCCACCGCCGCCGCCCCGGAAACGCCCAAGGACAGTGCCACGAATACTGGAACCAAAAGAAAGGGTGGGGCTGGGGGTTTAAATAAAGTCTGTGGTGTCACACCTGAGCTTCAGGTTATTGTTGGTGAACCAGCCTTGCCAAGGACTGAGATTGTGAAGCAGCTCTGGGCGTACATAAGGAAGCACAACCTCCAAGATCCAAGTAATAAGAGAAAGATTATTTGTGATGATGCGTTGCGCGTGGTATTTGAGACTGATTGTACTGACATGTTCAAGATGAATAAGCTGCTGTCCAAGCATATTATAACCCTTGGACCTAAAAAGGAGCCACCTCAAGCTAAGCGAGTGAAGTTAGATGTTGAGTCTGCAACTGACACTGATAGTACTCAACCTGGTTCCTCTACTGTTACAATATCTGAAGCACTAGCTAAGTTTCTGGGTTTGGAAGGGAGGGAGATGCTCAAGTCTGAGGCAATTAGACTTGTTTGGGAGTACGTAAAGGCTAACAATTTGGAGGATCCTGTAAATTCTATGGTGATAGTATGTGATCCAAAGCTCCATGAGCTTCTTGGATGCGATAGCATATCTGCTCTGGGGGTCCAAGAGATGTTAGACCGCTATCATTTCATCAAACAGTCATGA

Protein Analysis

368

Amino Acids

40.91

Weight (kDa)

7.28

Isoelectric Point (pI)

55.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEK_C PF08766 2 - 53 5.2e-11 DEK C terminal domain
SWIB PF02201 185 - 255 9e-28 SWIB/MDM2 domain
SWIB PF02201 290 - 361 7.8e-18 SWIB/MDM2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22360
fragaria_vesca FvH4_3g00950
malus_domestica MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis pycom05g32390
rosa_chinensis RchiOBHm_Chr5g0001471
rosa_laevigata RLG00000030931
rosa_multiflora Rmu_sc0003749.1_g000011
rosa_roxburghii Rroxscaffold_1G00074920
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana Rw5G001080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 767
AatII GACGTC 1 cut(s) 69
AccB1I GGYRCC 1 cut(s) 376
AccB7I CCANNNNNTGG 1 cut(s) 406
AccII CGCG 2 cut(s) 147, 702
AclWI GGATC 4 cut(s) 653, 974, 987, 1004
AcsI RAATTY 1 cut(s) 988
AcuI CTGAAG 2 cut(s) 557, 900
AcyI GRCGYC 3 cut(s) 66, 84, 377
AfaI GTAC 4 cut(s) 635, 724, 847, 956
AfiI CCNNNNNNNGG 3 cut(s) 111, 406, 603
AflIII ACRYGT 1 cut(s) 729
AgsI TTSAA 1 cut(s) 736
AjnI CCWGG 2 cut(s) 372, 853
Alw21I GWGCWC 1 cut(s) 45
Alw26I GTCTC 2 cut(s) 29, 707
AlwI GGATC 4 cut(s) 653, 974, 987, 1004
Ama87I CYCGRG 1 cut(s) 98
AoxI GGCC 3 cut(s) 55, 102, 360
ApeKI GCWGC 7 cut(s) 94, 134, 391, 418, 421, 622, 748
ApoI RAATTY 1 cut(s) 988
AspLEI GCGC 2 cut(s) 379, 702
AspS9I GGNCC 6 cut(s) 10, 56, 118, 409, 776, 1060
AsuC2I CCSGG 1 cut(s) 479
AsuHPI GGTGA 4 cut(s) 61, 254, 599, 1009
AvaI CYCGRG 1 cut(s) 98
AvaII GGWCC 5 cut(s) 10, 118, 409, 776, 1060
AxyI CCTNAGG 1 cut(s) 357
BamHI GGATCC 1 cut(s) 979
BanI GGYRCC 1 cut(s) 376
BbsI GAAGAC 1 cut(s) 439
Bbv12I GWGCWC 1 cut(s) 45
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 7 cut(s) 106, 121, 403, 430, 433, 634, 735
BccI CCATC 2 cut(s) 267, 408
BceAI ACGGC 1 cut(s) 97
BciT130I CCWGG 2 cut(s) 374, 855
BcnI CCSGG 1 cut(s) 479
BcoDI GTCTC 2 cut(s) 29, 707
BfaI CTAG 2 cut(s) 110, 887
BfoI RGCGCY 1 cut(s) 380
BlpI GCTNAGC 1 cut(s) 801
BmcAI AGTACT 1 cut(s) 847
Bme1390I CCNGG 3 cut(s) 374, 479, 855
Bme18I GGWCC 5 cut(s) 10, 118, 409, 776, 1060
BmeT110I CYCGRG 1 cut(s) 98
BmgT120I GGNCC 6 cut(s) 10, 56, 118, 409, 776, 1060
BmiI GGNNCC 7 cut(s) 378, 429, 514, 789, 859, 981, 1061
BmrFI CCNGG 3 cut(s) 374, 479, 855
BmsI GCATC 3 cut(s) 682, 909, 1025
BpiI GAAGAC 1 cut(s) 439
Bpu10I CCTNAGC 3 cut(s) 282, 387, 567
Bpu1102I GCTNAGC 1 cut(s) 801
BpuEI CTTGAG 2 cut(s) 780, 908
BpuMI CCSGG 1 cut(s) 479
BsaAI YACGTR 1 cut(s) 958
BsaHI GRCGYC 3 cut(s) 66, 84, 377
BsaJI CCNNGG 4 cut(s) 477, 489, 602, 772
BsaWI WCCGGW 1 cut(s) 403
BsaXI ACNNNNNCTCC 6 cut(s) 56, 86, 279, 309, 320, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 111, 406, 603
Bse118I RCCGGY 1 cut(s) 424
Bse1I ACTGG 1 cut(s) 514
Bse21I CCTNAGG 1 cut(s) 357
BseBI CCWGG 2 cut(s) 374, 855
BseDI CCNNGG 4 cut(s) 477, 489, 602, 772
BseGI GGATG 2 cut(s) 400, 1040
BseLI CCNNNNNNNGG 3 cut(s) 111, 406, 603
BseMII CTCAG 6 cut(s) 296, 348, 401, 558, 600, 921
BseNI ACTGG 1 cut(s) 514
BseRI GAGGAG 2 cut(s) 155, 342
BseXI GCAGC 7 cut(s) 106, 121, 403, 430, 433, 634, 735
BseYI CCCAGC 2 cut(s) 236, 533
Bsh1236I CGCG 2 cut(s) 147, 702
BshFI GGCC 3 cut(s) 57, 104, 362
BshNI GGYRCC 1 cut(s) 376
BsiHKAI GWGCWC 1 cut(s) 45
BsiHKCI CYCGRG 1 cut(s) 98
BsiSI CCGG 3 cut(s) 404, 425, 479
BslI CCNNNNNNNGG 3 cut(s) 111, 406, 603
BsmAI GTCTC 2 cut(s) 29, 707
BsmI GAATGC 1 cut(s) 466
BsnI GGCC 3 cut(s) 57, 104, 362
BsoBI CYCGRG 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 45
Bsp143I GATC 4 cut(s) 153, 658, 979, 1009
Bsp1720I GCTNAGC 1 cut(s) 801
Bsp68I TCGCGA 1 cut(s) 147
BspANI GGCC 3 cut(s) 57, 104, 362
BspCNI CTCAG 6 cut(s) 295, 349, 400, 559, 601, 922
BspFNI CGCG 2 cut(s) 147, 702
BspHI TCATGA 1 cut(s) 1100
BspLI GGNNCC 7 cut(s) 378, 429, 514, 789, 859, 981, 1061
BspPI GGATC 4 cut(s) 653, 974, 987, 1004
BspT107I GGYRCC 1 cut(s) 376
BsrFI RCCGGY 1 cut(s) 424
BsrI ACTGG 1 cut(s) 514
BssAI RCCGGY 1 cut(s) 424
BssECI CCNNGG 4 cut(s) 477, 489, 602, 772
BssMI GATC 4 cut(s) 153, 658, 979, 1009
BssNI GRCGYC 3 cut(s) 66, 84, 377
BssT1I CCWWGG 3 cut(s) 489, 602, 772
Bst2UI CCWGG 2 cut(s) 374, 855
Bst4CI ACNGT 4 cut(s) 40, 497, 868, 1098
BstACI GRCGYC 3 cut(s) 66, 84, 377
BstAPI GCANNNNNTGC 1 cut(s) 461
BstBAI YACGTR 1 cut(s) 958
BstC8I GCNNGC 1 cut(s) 426
BstDEI CTNAG 8 cut(s) 282, 357, 387, 567, 609, 801, 891, 930
BstENI CCTNNNNNAGG 1 cut(s) 601
BstF5I GGATG 2 cut(s) 400, 1040
BstFNI CGCG 2 cut(s) 147, 702
BstH2I RGCGCY 1 cut(s) 380
BstHHI GCGC 2 cut(s) 379, 702
BstKTI GATC 4 cut(s) 156, 661, 982, 1012
BstMAI GTCTC 2 cut(s) 29, 707
BstMBI GATC 4 cut(s) 153, 658, 979, 1009
BstMWI GCNNNNNNNGC 7 cut(s) 388, 391, 421, 461, 470, 757, 1024
BstNI CCWGG 2 cut(s) 374, 855
BstNSI RCATGY 1 cut(s) 733
BstSCI CCNGG 3 cut(s) 372, 477, 853
BstSNI TACGTA 1 cut(s) 958
BstUI CGCG 2 cut(s) 147, 702
BstV1I GCAGC 7 cut(s) 106, 121, 403, 430, 433, 634, 735
BstV2I GAAGAC 1 cut(s) 439
BstX2I RGATCY 2 cut(s) 658, 979
BstYI RGATCY 2 cut(s) 658, 979
Bsu36I CCTNAGG 1 cut(s) 357
BsuRI GGCC 3 cut(s) 57, 104, 362
BtsCI GGATG 2 cut(s) 400, 1040
BtsIMutI CAGTG 2 cut(s) 502, 837
BtuMI TCGCGA 1 cut(s) 147
Cac8I GCNNGC 1 cut(s) 426
CciI TCATGA 1 cut(s) 1100
CfoI GCGC 2 cut(s) 379, 702
Cfr10I RCCGGY 1 cut(s) 424
Cfr13I GGNCC 6 cut(s) 10, 56, 118, 409, 776, 1060
CseI GACGC 1 cut(s) 73
CsiI ACCWGGT 1 cut(s) 853
Csp6I GTAC 4 cut(s) 634, 723, 846, 955
CviAII CATG 3 cut(s) 730, 1022, 1101
CviQI GTAC 4 cut(s) 634, 723, 846, 955
DdeI CTNAG 8 cut(s) 282, 357, 387, 567, 609, 801, 891, 930
DinI GGCGCC 1 cut(s) 378
DpnI GATC 4 cut(s) 155, 660, 981, 1011
DpnII GATC 4 cut(s) 153, 658, 979, 1009
DraI TTTAAA 1 cut(s) 543
EciI GGCGGA 1 cut(s) 158
Eco105I TACGTA 1 cut(s) 958
Eco130I CCWWGG 3 cut(s) 489, 602, 772
Eco147I AGGCCT 1 cut(s) 362
Eco47I GGWCC 5 cut(s) 10, 118, 409, 776, 1060
Eco57I CTGAAG 2 cut(s) 557, 900
Eco81I CCTNAGG 1 cut(s) 357
Eco88I CYCGRG 1 cut(s) 98
EcoNI CCTNNNNNAGG 1 cut(s) 601
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 2 cut(s) 372, 853
EcoT14I CCWWGG 3 cut(s) 489, 602, 772
EgeI GGCGCC 1 cut(s) 378
EheI GGCGCC 1 cut(s) 378
ErhI CCWWGG 3 cut(s) 489, 602, 772
FaeI CATG 3 cut(s) 733, 1025, 1104
FaiI YATR 9 cut(s) 638, 731, 762, 767, 995, 1006, 1023, 1046, 1102
FalI AAGNNNNNCTT 2 cut(s) 122, 154
FatI CATG 3 cut(s) 729, 1021, 1100
FauI CCCGC 1 cut(s) 460
FokI GGATG 2 cut(s) 387, 1047
FspBI CTAG 2 cut(s) 110, 887
GlaI GCGC 2 cut(s) 378, 701
GsaI CCCAGC 2 cut(s) 240, 537
HaeII RGCGCY 1 cut(s) 380
HaeIII GGCC 3 cut(s) 57, 104, 362
HapII CCGG 3 cut(s) 404, 425, 479
HgaI GACGC 1 cut(s) 73
HhaI GCGC 2 cut(s) 379, 702
Hin1I GRCGYC 3 cut(s) 66, 84, 377
Hin1II CATG 3 cut(s) 733, 1025, 1104
Hin6I GCGC 2 cut(s) 377, 700
HinP1I GCGC 2 cut(s) 377, 700
HincII GTYRAC 1 cut(s) 50
HindII GTYRAC 1 cut(s) 50
HinfI GANTC 1 cut(s) 824
HpaII CCGG 3 cut(s) 404, 425, 479
HphI GGTGA 4 cut(s) 61, 254, 599, 1009
Hpy166II GTNNAC 3 cut(s) 50, 79, 590
Hpy188I TCNGA 3 cut(s) 10, 880, 931
Hpy188III TCNNGA 4 cut(s) 146, 356, 736, 1101
Hpy8I GTNNAC 3 cut(s) 50, 79, 590
Hpy99I CGWCG 2 cut(s) 68, 89
HpyAV CCTTC 5 cut(s) 20, 148, 321, 379, 902
HpyCH4III ACNGT 4 cut(s) 40, 497, 868, 1098
HpyCH4IV ACGT 2 cut(s) 66, 957
HpyCH4V TGCA 1 cut(s) 830
HpyF10VI GCNNNNNNNGC 7 cut(s) 388, 391, 421, 461, 470, 757, 1024
HpyF3I CTNAG 8 cut(s) 282, 357, 387, 567, 609, 801, 891, 930
HpySE526I ACGT 2 cut(s) 66, 957
Hsp92I GRCGYC 3 cut(s) 66, 84, 377
Hsp92II CATG 3 cut(s) 733, 1025, 1104
HspAI GCGC 2 cut(s) 377, 700
KasI GGCGCC 1 cut(s) 376
KroI GCCGGC 1 cut(s) 424
KroNI GCCGGC 1 cut(s) 426
Kzo9I GATC 4 cut(s) 153, 658, 979, 1009
LmnI GCTCC 4 cut(s) 48, 433, 787, 1023
Lsp1109I GCAGC 7 cut(s) 106, 121, 403, 430, 433, 634, 735
LweI GCATC 3 cut(s) 682, 909, 1025
MabI ACCWGGT 1 cut(s) 853
MaeI CTAG 2 cut(s) 110, 887
MaeII ACGT 2 cut(s) 66, 957
MaeIII GTNAC 3 cut(s) 67, 559, 868
MalI GATC 4 cut(s) 155, 660, 981, 1011
MboI GATC 4 cut(s) 153, 658, 979, 1009
MboII GAAGA 1 cut(s) 439
MflI RGATCY 2 cut(s) 658, 979
MhlI GDGCHC 1 cut(s) 45
MluCI AATT 6 cut(s) 275, 290, 305, 936, 970, 988
Mly113I GGCGCC 1 cut(s) 377
MlyI GAGTC 1 cut(s) 833
MmeI TCCRAC 1 cut(s) 96
MroNI GCCGGC 1 cut(s) 424
MseI TTAA 1 cut(s) 542
MspI CCGG 3 cut(s) 404, 425, 479
MspR9I CCNGG 3 cut(s) 374, 479, 855
Mva1269I GAATGC 1 cut(s) 466
MvaI CCWGG 2 cut(s) 374, 855
MvnI CGCG 2 cut(s) 147, 702
MwoI GCNNNNNNNGC 7 cut(s) 388, 391, 421, 461, 470, 757, 1024
NaeI GCCGGC 1 cut(s) 426
NarI GGCGCC 1 cut(s) 377
NciI CCSGG 1 cut(s) 479
NdeII GATC 4 cut(s) 153, 658, 979, 1009
NgoMIV GCCGGC 1 cut(s) 424
NlaIII CATG 3 cut(s) 733, 1025, 1104
NlaIV GGNNCC 7 cut(s) 378, 429, 514, 789, 859, 981, 1061
NmuCI GTSAC 2 cut(s) 67, 559
NruI TCGCGA 1 cut(s) 147
NspI RCATGY 1 cut(s) 733
PaeR7I CTCGAG 1 cut(s) 98
PagI TCATGA 1 cut(s) 1100
PceI AGGCCT 1 cut(s) 362
PciI ACATGT 1 cut(s) 729
PcsI WCGNNNNNNNCGW 1 cut(s) 72
PctI GAATGC 1 cut(s) 466
PdiI GCCGGC 1 cut(s) 426
PflMI CCANNNNNTGG 1 cut(s) 406
PleI GAGTC 1 cut(s) 832
PluTI GGCGCC 1 cut(s) 380
PpsI GAGTC 1 cut(s) 832
Ppu21I YACGTR 1 cut(s) 958
PscI ACATGT 1 cut(s) 729
PsiI TTATAA 1 cut(s) 767
Psp6I CCWGG 2 cut(s) 372, 853
PspFI CCCAGC 2 cut(s) 236, 533
PspGI CCWGG 2 cut(s) 372, 853
PspN4I GGNNCC 7 cut(s) 378, 429, 514, 789, 859, 981, 1061
PspPI GGNCC 6 cut(s) 10, 56, 118, 409, 776, 1060
PspXI VCTCGAGB 1 cut(s) 98
PsuI RGATCY 2 cut(s) 658, 979
RruI TCGCGA 1 cut(s) 147
RsaI GTAC 4 cut(s) 635, 724, 847, 956
RsaNI GTAC 4 cut(s) 634, 723, 846, 955
SaqAI TTAA 1 cut(s) 542
Sau3AI GATC 4 cut(s) 153, 658, 979, 1009
Sau96I GGNCC 6 cut(s) 10, 56, 118, 409, 776, 1060
ScaI AGTACT 1 cut(s) 847
SchI GAGTC 1 cut(s) 833
ScrFI CCNGG 3 cut(s) 374, 479, 855
SduI GDGCHC 1 cut(s) 45
SexAI ACCWGGT 1 cut(s) 853
SfaNI GCATC 3 cut(s) 682, 909, 1025
SfoI GGCGCC 1 cut(s) 378
Sfr274I CTCGAG 1 cut(s) 98
SinI GGWCC 5 cut(s) 10, 118, 409, 776, 1060
SlaI CTCGAG 1 cut(s) 98
SmlI CTYRAG 3 cut(s) 98, 795, 923
SmoI CTYRAG 3 cut(s) 98, 795, 923
SnaBI TACGTA 1 cut(s) 958
Sse9I AATT 6 cut(s) 275, 290, 305, 936, 970, 988
SseBI AGGCCT 1 cut(s) 362
SspDI GGCGCC 1 cut(s) 376
SspMI CTAG 2 cut(s) 110, 887
StuI AGGCCT 1 cut(s) 362
StyD4I CCNGG 3 cut(s) 372, 477, 853
StyI CCWWGG 3 cut(s) 489, 602, 772
TaaI ACNGT 4 cut(s) 40, 497, 868, 1098
TaiI ACGT 2 cut(s) 69, 960
TaqI TCGA 1 cut(s) 99
TasI AATT 6 cut(s) 275, 290, 305, 936, 970, 988
TatI WGTACW 2 cut(s) 722, 845
TauI GCSGC 5 cut(s) 382, 385, 418, 473, 476
Tru1I TTAA 1 cut(s) 542
Tru9I TTAA 1 cut(s) 542
TscAI CASTG 2 cut(s) 502, 844
TseFI GTSAC 2 cut(s) 67, 559
TseI GCWGC 7 cut(s) 94, 134, 391, 418, 421, 622, 748
Tsp45I GTSAC 2 cut(s) 67, 559
TspDTI ATGAA 3 cut(s) 130, 755, 1078
TspGWI ACGGA 2 cut(s) 35, 64
TspRI CASTG 2 cut(s) 502, 844
Van91I CCANNNNNTGG 1 cut(s) 406
VpaK11BI GGWCC 5 cut(s) 10, 118, 409, 776, 1060
XagI CCTNNNNNAGG 1 cut(s) 601
XapI RAATTY 1 cut(s) 988
XceI RCATGY 1 cut(s) 733
XcmI CCANNNNNNNNNTGG 2 cut(s) 112, 1028
XhoI CTCGAG 1 cut(s) 98
XspI CTAG 2 cut(s) 110, 887
ZraI GACGTC 1 cut(s) 67
ZrmI AGTACT 1 cut(s) 847
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.