Prupe.4G010100_v2.0.a1

Upstream activation factor subunit

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
Physical Location & Seq
Reverse (-)
499857 .. 503844
3988 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G010100.2

Sequence Viewer

Length: 1254 bp
ATGAAGGGATATTTTCGTCATTTCAGCGTTATAAAGAGAGCGGTAAAGAGTAGAGAGAGACAGAGAGAGGAAGAGAGAGACAGAGAGAAGAAGAGAGAGAGCAGGCTGAGAGAGAGAGTGAAGAGCGTTTGGTTTCCGTTTATTCTGTTAATATATGTGTGTACCAGCATGGTGTCGGACCAAGAAATAGCGGAAGGTGTGGAGACTGTTCTCCGTCAATCAGGCCCTAACGACGTCACCTCCGTAAACGGTGTCGTTCAGCAGCTCGAGGCCAAGCTAGGGTTAGACCTGTCCCACAAGGCTGGCTTCATTCGGGACCAGATCAGCTTCCTCCTCCGCCCGTACGCCCAACCGCAACCCCAACACCAACCTCCGAAAGACCATTTTGCCCTCCACACCAACCCCCAGCACCATTACCACCACCATCCTCAATTCCTCCCCCAACAATTTCCTCCCCATTTTGCCCTCCACCCCCACCACCGCGCCCCCGAGCCCCACAGCTTCCAGCAGCCGCCGCCGCCTCAGCAACTGCGGCCTCAGGCTCAGCTGCAGCCTCCCGCTGTGAAGCACGAGGCCTTGGCGCAGAATGCCACTAAAGTCGCCCCAGAAACTCCCAAAGAGAGTGCTCCGGCTTCTGGAACCAAGAGAAGAGGTGGGCCAGGGGGTCTTAACAAAGTCTGTGGTGTCTCACCTGAGCTTCAGGCTGTTGTTGGTGAACCGGCCTTGCCAAGGACTGAGATTGTAAAGCAGCTCTGGGCATACATAAGGAAGAACAACCTCCAAGATCCAAGTAATAAGAGAAAGATAATTTGTGATGATGCCTTGCGTGTGGTATTTGAGACAGACTGTACTGACATGTTCAAGATGAATAAGCTGCTAGCTAAACATATTATACCCCTTGGACCTAACAAGGAGTCAACTCAAGCTAAACGATTGAAGTTAGAGGCCAAGTCCACCACTGATAGTACTGAACCTCAACCTCAAGTTCAACCACAACCACAACCTGGTTCCCCTACTGTAGGAATATCTGAAGCACTAGCTAAGTTTTTGGGCTTTGGAGGAAGGGAGATGCTCCTATCTAAGGCAAGAAGCCTTGTTTGGGAGTATGTAAAGGCTAACCGTTTGGAGGATCCTTTAAATTCTACGGTGATATTATGTGACGCAAAGCTCCACGAGCTTCTTGGATGCGAAAGCATTTCTGCAGTGGGGTTGCACGAGATGTTAGATCGCTATCACTTGTTCAAACAATTGTGA

Protein Analysis

418

Amino Acids

47.19

Weight (kDa)

9.41

Isoelectric Point (pI)

61.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0014457)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G22360
fragaria_vesca FvH4_3g00950
malus_domestica MD05G1358100.v1.1 MD10G1332000.v1.1
prunus_persica Prupe.4G010100_v2.0.a1 Prupe.4G010100_v2.0.a1
pyrus_communis pycom05g32390
rosa_chinensis RchiOBHm_Chr5g0001471
rosa_laevigata RLG00000030931
rosa_multiflora Rmu_sc0003749.1_g000011
rosa_roxburghii Rroxscaffold_1G00074920
rosa_rugosa Rorug04G0390500
rosa_samantha Rh5AG011400 Rh5BG013900 Rh5CG012400 Rh5DG011600
rosa_wichuraiana Rw5G001080

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 32
AatII GACGTC 1 cut(s) 237
AccB7I CCANNNNNTGG 1 cut(s) 1004
AccBSI CCGCTC 1 cut(s) 41
AccII CGCG 1 cut(s) 483
AclWI GGATC 3 cut(s) 779, 1124, 1137
AcsI RAATTY 1 cut(s) 1138
AcuI CTGAAG 2 cut(s) 683, 1050
AcyI GRCGYC 1 cut(s) 234
AfaI GTAC 4 cut(s) 163, 344, 850, 967
AfiI CCNNNNNNNGG 8 cut(s) 279, 635, 729, 1004, 1019, 1081, 1099, 1126
AflIII ACRYGT 1 cut(s) 855
AgsI TTSAA 4 cut(s) 862, 937, 989, 1243
AjnI CCWGG 2 cut(s) 658, 1003
AjuI GAANNNNNNNTTGG 2 cut(s) 1081, 1113
Alw21I GWGCWC 1 cut(s) 628
Alw26I GTCTC 5 cut(s) 52, 72, 197, 691, 833
AlwI GGATC 3 cut(s) 779, 1124, 1137
AlwNI CAGNNNCTG 1 cut(s) 529
Ama87I CYCGRG 2 cut(s) 266, 488
AoxI GGCC 7 cut(s) 223, 270, 533, 573, 656, 720, 945
ApeKI GCWGC 6 cut(s) 262, 508, 547, 550, 748, 874
ApoI RAATTY 1 cut(s) 1138
AspLEI GCGC 2 cut(s) 485, 583
AspS9I GGNCC 5 cut(s) 178, 224, 316, 656, 902
AsuHPI GGTGA 4 cut(s) 229, 681, 725, 1159
AsuNHI GCTAGC 1 cut(s) 877
AvaI CYCGRG 2 cut(s) 266, 488
AvaII GGWCC 3 cut(s) 178, 316, 902
AxyI CCTNAGG 1 cut(s) 537
BamHI GGATCC 1 cut(s) 1129
BanII GRGCYC 1 cut(s) 495
BauI CACGAG 3 cut(s) 569, 1172, 1214
Bbv12I GWGCWC 1 cut(s) 628
BbvCI CCTCAGC 1 cut(s) 522
BbvI GCAGC 6 cut(s) 274, 520, 534, 562, 760, 861
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 660, 1005
BcoDI GTCTC 5 cut(s) 52, 72, 197, 691, 833
BfaI CTAG 3 cut(s) 278, 878, 1037
BfmI CTRYAG 3 cut(s) 548, 1017, 1200
BlpI GCTNAGC 1 cut(s) 543
BmcAI AGTACT 1 cut(s) 967
Bme1390I CCNGG 2 cut(s) 660, 1005
Bme18I GGWCC 3 cut(s) 178, 316, 902
BmeT110I CYCGRG 2 cut(s) 266, 488
BmgT120I GGNCC 5 cut(s) 178, 224, 316, 656, 902
BmiI GGNNCC 4 cut(s) 317, 640, 1009, 1131
BmrFI CCNGG 2 cut(s) 660, 1005
BmsI GCATC 3 cut(s) 808, 1059, 1175
BmtI GCTAGC 1 cut(s) 881
Bpu10I CCTNAGC 2 cut(s) 522, 693
Bpu1102I GCTNAGC 1 cut(s) 543
BpuEI CTTGAG 2 cut(s) 906, 966
BsaBI GATNNNNATC 1 cut(s) 1230
BsaHI GRCGYC 1 cut(s) 234
BsaJI CCNNGG 4 cut(s) 576, 659, 728, 898
BsaXI ACNNNNNCTCC 2 cut(s) 224, 254
Bsc4I CCNNNNNNNGG 8 cut(s) 279, 635, 729, 1004, 1019, 1081, 1099, 1126
Bse118I RCCGGY 1 cut(s) 718
Bse21I CCTNAGG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 1230
BseBI CCWGG 2 cut(s) 660, 1005
BseDI CCNNGG 4 cut(s) 576, 659, 728, 898
BseGI GGATG 2 cut(s) 424, 1190
BseJI GATNNNNATC 1 cut(s) 1230
BseLI CCNNNNNNNGG 8 cut(s) 279, 635, 729, 1004, 1019, 1081, 1099, 1126
BseMII CTCAG 6 cut(s) 98, 536, 551, 557, 684, 726
BseRI GAGGAG 1 cut(s) 323
BseXI GCAGC 6 cut(s) 274, 520, 534, 562, 760, 861
BseYI CCCAGC 1 cut(s) 405
Bsh1236I CGCG 1 cut(s) 483
BshFI GGCC 7 cut(s) 225, 272, 535, 575, 658, 722, 947
BsiHKAI GWGCWC 1 cut(s) 628
BsiHKCI CYCGRG 2 cut(s) 266, 488
BsiSI CCGG 2 cut(s) 629, 719
BsiWI CGTACG 1 cut(s) 342
BslFI GGGAC 2 cut(s) 277, 329
BslI CCNNNNNNNGG 8 cut(s) 279, 635, 729, 1004, 1019, 1081, 1099, 1126
BsmAI GTCTC 5 cut(s) 52, 72, 197, 691, 833
BsmFI GGGAC 2 cut(s) 277, 329
BsmI GAATGC 1 cut(s) 592
BsnI GGCC 7 cut(s) 225, 272, 535, 575, 658, 722, 947
BsoBI CYCGRG 2 cut(s) 266, 488
Bsp1286I GDGCHC 2 cut(s) 495, 628
Bsp143I GATC 4 cut(s) 321, 784, 1129, 1225
Bsp1720I GCTNAGC 1 cut(s) 543
BspANI GGCC 7 cut(s) 225, 272, 535, 575, 658, 722, 947
BspCNI CTCAG 6 cut(s) 99, 535, 550, 556, 685, 727
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 4 cut(s) 317, 640, 1009, 1131
BspMAI CTGCAG 2 cut(s) 552, 1204
BspOI GCTAGC 1 cut(s) 881
BspPI GGATC 3 cut(s) 779, 1124, 1137
BspQI GCTCTTC 1 cut(s) 116
BsrBI CCGCTC 1 cut(s) 41
BsrFI RCCGGY 1 cut(s) 718
BssAI RCCGGY 1 cut(s) 718
BssECI CCNNGG 4 cut(s) 576, 659, 728, 898
BssMI GATC 4 cut(s) 321, 784, 1129, 1225
BssNI GRCGYC 1 cut(s) 234
BssSI CACGAG 3 cut(s) 569, 1172, 1214
BssT1I CCWWGG 3 cut(s) 576, 728, 898
Bst2BI CACGAG 3 cut(s) 569, 1172, 1214
Bst2UI CCWGG 2 cut(s) 660, 1005
Bst4CI ACNGT 6 cut(s) 208, 251, 848, 1018, 1121, 1147
Bst6I CTCTTC 4 cut(s) 66, 86, 116, 643
BstACI GRCGYC 1 cut(s) 234
BstC8I GCNNGC 3 cut(s) 104, 304, 879
BstDEI CTNAG 8 cut(s) 107, 522, 537, 543, 693, 735, 1041, 1080
BstENI CCTNNNNNAGG 3 cut(s) 727, 1017, 1079
BstF5I GGATG 2 cut(s) 424, 1190
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 2 cut(s) 485, 583
BstKTI GATC 4 cut(s) 324, 787, 1132, 1228
BstMAI GTCTC 5 cut(s) 52, 72, 197, 691, 833
BstMBI GATC 4 cut(s) 321, 784, 1129, 1225
BstMWI GCNNNNNNNGC 6 cut(s) 514, 517, 523, 532, 587, 1174
BstNI CCWGG 2 cut(s) 660, 1005
BstNSI RCATGY 1 cut(s) 859
BstSCI CCNGG 2 cut(s) 658, 1003
BstSFI CTRYAG 3 cut(s) 548, 1017, 1200
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 6 cut(s) 274, 520, 534, 562, 760, 861
BstX2I RGATCY 2 cut(s) 784, 1129
BstXI CCANNNNNNTGG 1 cut(s) 302
BstYI RGATCY 2 cut(s) 784, 1129
Bsu36I CCTNAGG 1 cut(s) 537
BsuRI GGCC 7 cut(s) 225, 272, 535, 575, 658, 722, 947
BtsCI GGATG 2 cut(s) 424, 1190
BtsI GCAGTG 1 cut(s) 1209
BtsIMutI CAGTG 2 cut(s) 957, 1209
Cac8I GCNNGC 3 cut(s) 104, 304, 879
CaiI CAGNNNCTG 1 cut(s) 529
CfoI GCGC 2 cut(s) 485, 583
Cfr10I RCCGGY 1 cut(s) 718
Cfr13I GGNCC 5 cut(s) 178, 224, 316, 656, 902
CseI GACGC 1 cut(s) 1169
CsiI ACCWGGT 1 cut(s) 1003
Csp6I GTAC 4 cut(s) 162, 343, 849, 966
CspCI CAANNNNNGTGG 2 cut(s) 661, 696
CviAII CATG 2 cut(s) 169, 856
CviQI GTAC 4 cut(s) 162, 343, 849, 966
DdeI CTNAG 8 cut(s) 107, 522, 537, 543, 693, 735, 1041, 1080
DpnI GATC 4 cut(s) 323, 786, 1131, 1227
DpnII GATC 4 cut(s) 321, 784, 1129, 1225
DraI TTTAAA 1 cut(s) 1137
Eam1104I CTCTTC 4 cut(s) 66, 86, 116, 643
EarI CTCTTC 4 cut(s) 66, 86, 116, 643
EciI GGCGGA 1 cut(s) 326
Eco130I CCWWGG 3 cut(s) 576, 728, 898
Eco147I AGGCCT 1 cut(s) 575
Eco24I GRGCYC 1 cut(s) 495
Eco47I GGWCC 3 cut(s) 178, 316, 902
Eco57I CTGAAG 2 cut(s) 683, 1050
Eco81I CCTNAGG 1 cut(s) 537
Eco88I CYCGRG 2 cut(s) 266, 488
EcoNI CCTNNNNNAGG 3 cut(s) 727, 1017, 1079
EcoO109I RGGNCCY 1 cut(s) 224
EcoRII CCWGG 2 cut(s) 658, 1003
EcoT14I CCWWGG 3 cut(s) 576, 728, 898
EcoT38I GRGCYC 1 cut(s) 495
ErhI CCWWGG 3 cut(s) 576, 728, 898
FaeI CATG 2 cut(s) 172, 859
FalI AAGNNNNNCTT 2 cut(s) 290, 322
FaqI GGGAC 2 cut(s) 277, 329
FatI CATG 2 cut(s) 168, 855
FauI CCCGC 1 cut(s) 565
FokI GGATG 2 cut(s) 411, 1197
FriOI GRGCYC 1 cut(s) 495
FspBI CTAG 3 cut(s) 278, 878, 1037
GlaI GCGC 2 cut(s) 484, 582
GsaI CCCAGC 1 cut(s) 409
HaeIII GGCC 7 cut(s) 225, 272, 535, 575, 658, 722, 947
HapII CCGG 2 cut(s) 629, 719
HgaI GACGC 1 cut(s) 1169
HhaI GCGC 2 cut(s) 485, 583
Hin1I GRCGYC 1 cut(s) 234
Hin1II CATG 2 cut(s) 172, 859
Hin6I GCGC 2 cut(s) 483, 581
HinP1I GCGC 2 cut(s) 483, 581
HincII GTYRAC 1 cut(s) 918
HindII GTYRAC 1 cut(s) 918
HinfI GANTC 1 cut(s) 914
HpaII CCGG 2 cut(s) 629, 719
HphI GGTGA 4 cut(s) 229, 681, 725, 1159
Hpy166II GTNNAC 5 cut(s) 162, 247, 716, 918, 954
Hpy188I TCNGA 3 cut(s) 178, 375, 1030
Hpy188III TCNNGA 3 cut(s) 314, 636, 862
Hpy8I GTNNAC 5 cut(s) 162, 247, 716, 918, 954
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 2 cut(s) 188, 1056
HpyCH4III ACNGT 6 cut(s) 208, 251, 848, 1018, 1121, 1147
HpyCH4IV ACGT 1 cut(s) 234
HpyCH4V TGCA 3 cut(s) 550, 1202, 1213
HpyF10VI GCNNNNNNNGC 6 cut(s) 514, 517, 523, 532, 587, 1174
HpyF3I CTNAG 8 cut(s) 107, 522, 537, 543, 693, 735, 1041, 1080
HpySE526I ACGT 1 cut(s) 234
Hsp92I GRCGYC 1 cut(s) 234
Hsp92II CATG 2 cut(s) 172, 859
HspAI GCGC 2 cut(s) 483, 581
Kzo9I GATC 4 cut(s) 321, 784, 1129, 1225
LguI GCTCTTC 1 cut(s) 116
LmnI GCTCC 3 cut(s) 631, 1077, 1173
Lsp1109I GCAGC 6 cut(s) 274, 520, 534, 562, 760, 861
LweI GCATC 3 cut(s) 808, 1059, 1175
MabI ACCWGGT 1 cut(s) 1003
MaeI CTAG 3 cut(s) 278, 878, 1037
MaeII ACGT 1 cut(s) 234
MaeIII GTNAC 2 cut(s) 235, 1157
MalI GATC 4 cut(s) 323, 786, 1131, 1227
MbiI CCGCTC 1 cut(s) 41
MboI GATC 4 cut(s) 321, 784, 1129, 1225
MboII GAAGA 6 cut(s) 83, 100, 103, 133, 660, 781
MfeI CAATTG 1 cut(s) 1247
MflI RGATCY 2 cut(s) 784, 1129
MhlI GDGCHC 2 cut(s) 495, 628
MluCI AATT 5 cut(s) 431, 446, 807, 1138, 1247
MlyI GAGTC 1 cut(s) 923
MmeI TCCRAC 1 cut(s) 156
MseI TTAA 3 cut(s) 149, 669, 1136
MspA1I CMGCKG 2 cut(s) 547, 560
MspI CCGG 2 cut(s) 629, 719
MspR9I CCNGG 2 cut(s) 660, 1005
MunI CAATTG 1 cut(s) 1247
Mva1269I GAATGC 1 cut(s) 592
MvaI CCWGG 2 cut(s) 660, 1005
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 6 cut(s) 514, 517, 523, 532, 587, 1174
NdeII GATC 4 cut(s) 321, 784, 1129, 1225
NheI GCTAGC 1 cut(s) 877
NlaIII CATG 2 cut(s) 172, 859
NlaIV GGNNCC 4 cut(s) 317, 640, 1009, 1131
NmuCI GTSAC 2 cut(s) 235, 1157
NspI RCATGY 1 cut(s) 859
PaeR7I CTCGAG 1 cut(s) 266
PceI AGGCCT 1 cut(s) 575
PciI ACATGT 1 cut(s) 855
PciSI GCTCTTC 1 cut(s) 116
PcsI WCGNNNNNNNCGW 1 cut(s) 240
PctI GAATGC 1 cut(s) 592
Pfl23II CGTACG 1 cut(s) 342
PflMI CCANNNNNTGG 1 cut(s) 1004
PleI GAGTC 1 cut(s) 922
PpsI GAGTC 1 cut(s) 922
PscI ACATGT 1 cut(s) 855
PsiI TTATAA 1 cut(s) 32
Psp6I CCWGG 2 cut(s) 658, 1003
PspFI CCCAGC 1 cut(s) 405
PspGI CCWGG 2 cut(s) 658, 1003
PspLI CGTACG 1 cut(s) 342
PspN4I GGNNCC 4 cut(s) 317, 640, 1009, 1131
PspPI GGNCC 5 cut(s) 178, 224, 316, 656, 902
PspXI VCTCGAGB 1 cut(s) 266
PstI CTGCAG 2 cut(s) 552, 1204
PstNI CAGNNNCTG 1 cut(s) 529
PsuI RGATCY 2 cut(s) 784, 1129
PvuII CAGCTG 1 cut(s) 547
RsaI GTAC 4 cut(s) 163, 344, 850, 967
RsaNI GTAC 4 cut(s) 162, 343, 849, 966
SapI GCTCTTC 1 cut(s) 116
SaqAI TTAA 3 cut(s) 149, 669, 1136
Sau3AI GATC 4 cut(s) 321, 784, 1129, 1225
Sau96I GGNCC 5 cut(s) 178, 224, 316, 656, 902
ScaI AGTACT 1 cut(s) 967
SchI GAGTC 1 cut(s) 923
ScrFI CCNGG 2 cut(s) 660, 1005
SduI GDGCHC 2 cut(s) 495, 628
SexAI ACCWGGT 1 cut(s) 1003
SfaNI GCATC 3 cut(s) 808, 1059, 1175
SfcI CTRYAG 3 cut(s) 548, 1017, 1200
Sfr274I CTCGAG 1 cut(s) 266
SinI GGWCC 3 cut(s) 178, 316, 902
SlaI CTCGAG 1 cut(s) 266
SmlI CTYRAG 3 cut(s) 266, 921, 981
SmoI CTYRAG 3 cut(s) 266, 921, 981
Sse9I AATT 5 cut(s) 431, 446, 807, 1138, 1247
SseBI AGGCCT 1 cut(s) 575
SspMI CTAG 3 cut(s) 278, 878, 1037
StuI AGGCCT 1 cut(s) 575
StyD4I CCNGG 2 cut(s) 658, 1003
StyI CCWWGG 3 cut(s) 576, 728, 898
TaaI ACNGT 6 cut(s) 208, 251, 848, 1018, 1121, 1147
TaiI ACGT 1 cut(s) 237
TaqI TCGA 1 cut(s) 267
TasI AATT 5 cut(s) 431, 446, 807, 1138, 1247
TatI WGTACW 2 cut(s) 848, 965
TauI GCSGC 4 cut(s) 514, 517, 520, 535
Tru1I TTAA 3 cut(s) 149, 669, 1136
Tru9I TTAA 3 cut(s) 149, 669, 1136
TscAI CASTG 2 cut(s) 964, 1209
TseFI GTSAC 2 cut(s) 235, 1157
TseI GCWGC 6 cut(s) 262, 508, 547, 550, 748, 874
Tsp45I GTSAC 2 cut(s) 235, 1157
TspDTI ATGAA 3 cut(s) 17, 298, 881
TspGWI ACGGA 3 cut(s) 126, 203, 232
TspRI CASTG 2 cut(s) 964, 1209
Van91I CCANNNNNTGG 1 cut(s) 1004
VpaK11BI GGWCC 3 cut(s) 178, 316, 902
XagI CCTNNNNNAGG 3 cut(s) 727, 1017, 1079
XapI RAATTY 1 cut(s) 1138
XceI RCATGY 1 cut(s) 859
XcmI CCANNNNNNNNNTGG 1 cut(s) 1178
XhoI CTCGAG 1 cut(s) 266
XspI CTAG 3 cut(s) 278, 878, 1037
ZraI GACGTC 1 cut(s) 235
ZrmI AGTACT 1 cut(s) 967
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.