Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008450

Physical Location & Seq

Genomic Coordinates Reverse (-)

12314583 .. 12316725

Gene Structure 2143 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G23620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTGCTCCGTCGTGCAAAAACACTACCCAAAACCCTACAAAACCTCCGGTTATTCTCTCCGGCGGCGAACGCAGCTCTATCCCTAGATCATATCCAAGAAACCCAATTAACTTACCTCCCTGGATTCCCTCGACCCGATCCAAAACACGCAGAGACGATCTTAGCCGTTCCAAGGTCTGTCTCCGGCAAGAGCATATCAGCGAAAGAGCGTAAAGCGGGTCGGGTTCCTTCGATCATATTCGAACAAGAGGATGGACAACACGGAGGAAACAAGAGGCTTATTTCAGTTCAGACGAATCAGATCAGGAAGCTTGTGAATCATTTGGGTTACTCTTTTTTCCTCTCTAGGCTCTTTGATGTTGAGGTTCGAGCTGAGATTGGTTCTGATGAGGTTATTGAGAAAGTCAGAGCCTTGCCTAGAGCGATTCATTTGCACTCTGGGACTGATGCTCCACTGAATGTGACATTCATAAGAGCGCCTCCAGGTGCTTTGTTGAAAGTTGATATCCCTCTTGTGTTCATTGGAGATGATGTTTCTCCTGGATTGAAGAAAGGAGCATCTCTGAATACGATTAAAAGAACAGTAAAGTTCCTATGCCCAGCAGAGATTATCCCACCATATATAGAAGTAGATCTAAGCCAATTGGATATCGGACAAAAGCTAGTAATGGGAGACCTCAAGGTTCATCCGGCTTTAAAGCTTATAAAGTCCAAAGACGAACCCATTGTTAAGGTCGCCGGAGGACGTGTCACTGACACGCAAAAGAAATCGTCTGACACGCAAAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

264

Amino Acids

29.02

Weight (kDa)

9.84

Isoelectric Point (pI)

36.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L25p	PF01386	56 - 157	4.9e-09	Ribosomal L25p family
Ribosomal_TL5_C	PF14693	166 - 247	9.6e-21	Ribosomal protein TL5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23620 AT4G23620
fragaria_vesca	FvH4_4g11490
malus_domestica	MD12G1010000.v1.1 MD14G1007200.v1.1
prunus_persica	Prupe.1G080900_v2.0.a1 Prupe.1G080900_v2.0.a1 Prupe.1G563200_v2.0.a1
pyrus_communis	pycom12g00760 pycom14g00570
rosa_chinensis	RchiOBHm_Chr4g0408271 RchiOBHm_Chr4g0408291
rosa_laevigata	RLG00000008657
rosa_multiflora	Rmu_sc0018903.1_g000008
rosa_roxburghii	Rroxscaffold_5G00352790 Rroxscaffold_5G00352830
rosa_rugosa	Rorug04G0085100
rosa_samantha	Rh4AG149600 Rh4AG149800 Rh4CG156800 Rh4CG157100 Rh4DG142600
rosa_wichuraiana	Rw0G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	707
AciI	CCGC	2 cut(s)	65, 218
AclWI	GGATC	1 cut(s)	134
AfiI	CCNNNNNNNGG	1 cut(s)	174
AflIII	ACRYGT	1 cut(s)	748
AgsI	TTSAA	2 cut(s)	499, 550
AjiI	CACGTC	1 cut(s)	749
AjnI	CCWGG	3 cut(s)	121, 484, 541
AluBI	AGCT	5 cut(s)	77, 313, 374, 664, 703
AluI	AGCT	5 cut(s)	77, 313, 374, 664, 703
Alw26I	GTCTC	3 cut(s)	149, 187, 669
AlwI	GGATC	1 cut(s)	134
ApeKI	GCWGC	1 cut(s)	74
AspLEI	GCGC	1 cut(s)	481
AsuII	TTCGAA	1 cut(s)	243
BbvI	GCAGC	1 cut(s)	86
BccI	CCATC	1 cut(s)	248
BceAI	ACGGC	1 cut(s)	152
BcgI	CGANNNNNNTGC	2 cut(s)	415, 449
BciT130I	CCWGG	3 cut(s)	123, 486, 543
BcoDI	GTCTC	3 cut(s)	149, 187, 669
BfaI	CTAG	4 cut(s)	86, 348, 420, 665
BfoI	RGCGCY	1 cut(s)	482
BglII	AGATCT	1 cut(s)	634
BisI	GCNGC	2 cut(s)	66, 75
BlsI	GCNGC	2 cut(s)	67, 76
Bme1390I	CCNGG	3 cut(s)	123, 486, 543
BmgBI	CACGTC	1 cut(s)	749
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	3 cut(s)	123, 486, 543
BmsI	GCATC	2 cut(s)	439, 569
BpmI	CTGGAG	1 cut(s)	468
Bpu14I	TTCGAA	1 cut(s)	243
BpuEI	CTTGAG	1 cut(s)	665
BsaI	GGTCTC	1 cut(s)	669
BsaJI	CCNNGG	2 cut(s)	121, 173
BsaWI	WCCGGW	1 cut(s)	48
BsaXI	ACNNNNNCTCC	8 cut(s)	30, 60, 436, 466, 519, 549, 735, 765
Bsc4I	CCNNNNNNNGG	1 cut(s)	174
BseBI	CCWGG	3 cut(s)	123, 486, 543
BseDI	CCNNGG	2 cut(s)	121, 173
BseGI	GGATG	2 cut(s)	259, 688
BseLI	CCNNNNNNNGG	1 cut(s)	174
BseMII	CTCAG	1 cut(s)	366
BseXI	GCAGC	1 cut(s)	86
BseYI	CCCAGC	1 cut(s)	601
BsiSI	CCGG	5 cut(s)	49, 62, 186, 692, 741
BslFI	GGGAC	1 cut(s)	457
BslI	CCNNNNNNNGG	1 cut(s)	174
BsmAI	GTCTC	3 cut(s)	149, 187, 669
BsmBI	CGTCTC	1 cut(s)	149
BsmFI	GGGAC	1 cut(s)	457
Bso31I	GGTCTC	1 cut(s)	669
Bsp119I	TTCGAA	1 cut(s)	243
Bsp143I	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
BspACI	CCGC	2 cut(s)	65, 218
BspCNI	CTCAG	1 cut(s)	367
BspLI	GGNNCC	1 cut(s)	228
BspPI	GGATC	1 cut(s)	134
BspT104I	TTCGAA	1 cut(s)	243
BspTNI	GGTCTC	1 cut(s)	669
BssECI	CCNNGG	2 cut(s)	121, 173
BssMI	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
BssT1I	CCWWGG	1 cut(s)	173
Bst2UI	CCWGG	3 cut(s)	123, 486, 543
Bst4CI	ACNGT	1 cut(s)	586
BstBI	TTCGAA	1 cut(s)	243
BstDEI	CTNAG	3 cut(s)	163, 375, 638
BstF5I	GGATG	2 cut(s)	259, 688
BstH2I	RGCGCY	1 cut(s)	482
BstHHI	GCGC	1 cut(s)	481
BstKTI	GATC	6 cut(s)	91, 142, 162, 237, 306, 637
BstMAI	GTCTC	3 cut(s)	149, 187, 669
BstMBI	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
BstMWI	GCNNNNNNNGC	2 cut(s)	71, 74
BstNI	CCWGG	3 cut(s)	123, 486, 543
BstSCI	CCNGG	3 cut(s)	121, 484, 541
BstV1I	GCAGC	1 cut(s)	86
BstX2I	RGATCY	1 cut(s)	634
BstYI	RGATCY	1 cut(s)	634
BtrI	CACGTC	1 cut(s)	749
BtsCI	GGATG	2 cut(s)	259, 688
BtsIMutI	CAGTG	2 cut(s)	455, 753
CfoI	GCGC	1 cut(s)	481
DdeI	CTNAG	3 cut(s)	163, 375, 638
DpnI	GATC	6 cut(s)	90, 141, 161, 236, 305, 636
DpnII	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
DraI	TTTAAA	1 cut(s)	699
Eco130I	CCWWGG	1 cut(s)	173
Eco31I	GGTCTC	1 cut(s)	669
Eco32I	GATATC	2 cut(s)	508, 652
EcoRII	CCWGG	3 cut(s)	121, 484, 541
EcoRV	GATATC	2 cut(s)	508, 652
EcoT14I	CCWWGG	1 cut(s)	173
ErhI	CCWWGG	1 cut(s)	173
Esp3I	CGTCTC	1 cut(s)	149
FaiI	YATR	9 cut(s)	93, 197, 239, 473, 598, 622, 624, 626, 707
FaqI	GGGAC	1 cut(s)	457
FauI	CCCGC	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	66, 75
FokI	GGATG	2 cut(s)	266, 675
Fsp4HI	GCNGC	2 cut(s)	66, 75
FspBI	CTAG	4 cut(s)	86, 348, 420, 665
GlaI	GCGC	1 cut(s)	480
GluI	GCNGC	2 cut(s)	66, 75
GsaI	CCCAGC	1 cut(s)	605
GsuI	CTGGAG	1 cut(s)	468
HaeII	RGCGCY	1 cut(s)	482
HapII	CCGG	5 cut(s)	49, 62, 186, 692, 741
HhaI	GCGC	1 cut(s)	481
Hin6I	GCGC	1 cut(s)	479
HinP1I	GCGC	1 cut(s)	479
HindIII	AAGCTT	2 cut(s)	311, 701
HinfI	GANTC	4 cut(s)	126, 298, 319, 427
HpaII	CCGG	5 cut(s)	49, 62, 186, 692, 741
Hpy188I	TCNGA	7 cut(s)	294, 303, 388, 410, 567, 656, 778
Hpy188III	TCNNGA	1 cut(s)	307
Hpy99I	CGWCG	1 cut(s)	15
HpyAV	CCTTC	1 cut(s)	240
HpyCH4III	ACNGT	1 cut(s)	586
HpyCH4IV	ACGT	1 cut(s)	748
HpyCH4V	TGCA	2 cut(s)	17, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	71, 74
HpyF3I	CTNAG	3 cut(s)	163, 375, 638
HpySE526I	ACGT	1 cut(s)	748
HspAI	GCGC	1 cut(s)	479
Kzo9I	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
LmnI	GCTCC	3 cut(s)	12, 457, 557
Lsp1109I	GCAGC	1 cut(s)	86
LweI	GCATC	2 cut(s)	439, 569
MaeI	CTAG	4 cut(s)	86, 348, 420, 665
MaeII	ACGT	1 cut(s)	748
MaeIII	GTNAC	3 cut(s)	329, 463, 751
MalI	GATC	6 cut(s)	90, 141, 161, 236, 305, 636
MboI	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
MboII	GAAGA	1 cut(s)	562
MfeI	CAATTG	1 cut(s)	644
MflI	RGATCY	1 cut(s)	634
MluCI	AATT	2 cut(s)	107, 644
MseI	TTAA	4 cut(s)	110, 576, 698, 732
MspI	CCGG	5 cut(s)	49, 62, 186, 692, 741
MspR9I	CCNGG	3 cut(s)	123, 486, 543
MunI	CAATTG	1 cut(s)	644
MvaI	CCWGG	3 cut(s)	123, 486, 543
MwoI	GCNNNNNNNGC	2 cut(s)	71, 74
NdeII	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
NlaIV	GGNNCC	1 cut(s)	228
NmuCI	GTSAC	2 cut(s)	463, 751
NspV	TTCGAA	1 cut(s)	243
PfeI	GAWTC	4 cut(s)	126, 298, 319, 427
PfoI	TCCNGGA	1 cut(s)	541
PkrI	GCNGC	2 cut(s)	67, 76
PsiI	TTATAA	1 cut(s)	707
Psp6I	CCWGG	3 cut(s)	121, 484, 541
PspFI	CCCAGC	1 cut(s)	601
PspGI	CCWGG	3 cut(s)	121, 484, 541
PspN4I	GGNNCC	1 cut(s)	228
PsuI	RGATCY	1 cut(s)	634
SaqAI	TTAA	4 cut(s)	110, 576, 698, 732
SatI	GCNGC	2 cut(s)	66, 75
Sau3AI	GATC	6 cut(s)	88, 139, 159, 234, 303, 634
ScrFI	CCNGG	3 cut(s)	123, 486, 543
SfaNI	GCATC	2 cut(s)	439, 569
SfuI	TTCGAA	1 cut(s)	243
SmlI	CTYRAG	1 cut(s)	680
SmoI	CTYRAG	1 cut(s)	680
Sse9I	AATT	2 cut(s)	107, 644
SsiI	CCGC	2 cut(s)	65, 218
SspMI	CTAG	4 cut(s)	86, 348, 420, 665
StyD4I	CCNGG	3 cut(s)	121, 484, 541
StyI	CCWWGG	1 cut(s)	173
TaaI	ACNGT	1 cut(s)	586
TaiI	ACGT	1 cut(s)	751
TaqI	TCGA	4 cut(s)	133, 233, 243, 370
TasI	AATT	2 cut(s)	107, 644
TauI	GCSGC	1 cut(s)	68
TfiI	GAWTC	4 cut(s)	126, 298, 319, 427
Tru1I	TTAA	4 cut(s)	110, 576, 698, 732
Tru9I	TTAA	4 cut(s)	110, 576, 698, 732
TscAI	CASTG	2 cut(s)	462, 760
TseFI	GTSAC	2 cut(s)	463, 751
TseI	GCWGC	1 cut(s)	74
Tsp45I	GTSAC	2 cut(s)	463, 751
TspDTI	ATGAA	4 cut(s)	419, 460, 511, 677
TspGWI	ACGGA	1 cut(s)	279
TspRI	CASTG	2 cut(s)	462, 760
XspI	CTAG	4 cut(s)	86, 348, 420, 665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.