Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0008450

Physical Location & Seq

Genomic Coordinates Forward (+)

758279 .. 763566

Gene Structure 5288 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1007200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTCCTCCAGAGGCAGCGCGCCTCCGTGCTCACCCAAGCCCTCCAAATCCAACTCCGCCGATACACCCAATCGTCCGCCGCCGTCCTCCTCCAACCGGACCCCGAACTCGAATCCACCACCTCCTTCCCGATACCCGACCCGAAGTACGCCGAGACCATCTTCGCAGTCCCACGCACCACTTCCGGCAAAAGCATCTCCGCCAAAGAGCGCAAGGCCGGCCGCGTCCCCAGTATCATCTTCGAGCAGGAGGACGGCCAGCACGGCGGCAACAAGCGCCTCGTTTCTGTACGGACCAACCAGATCCGCAAGCTCGTCGGTCATCTCGGTCGCTCTTTCTTCCTCTCCAGGCTCTTTGACCTTGAGGTTCGCTCCGACTTCGATTCTGAAAACGACGTCATTGAGAGGGTCCGTGTTTTGCCTCGCTCGATTCATCTGCACTCTGCGACGGACGCACCGCTGAATGTGACCTTCATAAGGGCTCCTTCCCATGCTTTGTTGAAAGTCGATATTCCCCTTGTGTTTCGAGGAGACGATGTCTCTCCTGGATTGAAGAAAAATGGTTGTCTAAACACAATCAAGAGGACCGTAAAGTTCCTTTGTCCGGCTGATGTGATTCCTCCATATATTGATGTGGATCTGAGTGAGTTGGATGTTAACCAAAAGATAGTAATGGGAGATCTCAAAGTTCATCCAGATCTCAAGCTTCTGCAGTCAAAGAATGAGCCTGTTTGTAAGATCGCGGGAGCAAGGGTTTCTGAACAAAAGAAGTCTAAAGACAAAGACTCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

265

Amino Acids

29.53

Weight (kDa)

9.58

Isoelectric Point (pI)

43.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L25p	PF01386	56 - 158	2.1e-09	Ribosomal L25p family
Ribosomal_TL5_C	PF14693	167 - 250	3.3e-20	Ribosomal protein TL5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23620 AT4G23620
fragaria_vesca	FvH4_4g11490
malus_domestica	MD12G1010000.v1.1 MD14G1007200.v1.1
prunus_persica	Prupe.1G080900_v2.0.a1 Prupe.1G080900_v2.0.a1 Prupe.1G563200_v2.0.a1
pyrus_communis	pycom12g00760 pycom14g00570
rosa_chinensis	RchiOBHm_Chr4g0408271 RchiOBHm_Chr4g0408291
rosa_laevigata	RLG00000008657
rosa_multiflora	Rmu_sc0018903.1_g000008
rosa_roxburghii	Rroxscaffold_5G00352790 Rroxscaffold_5G00352830
rosa_rugosa	Rorug04G0085100
rosa_samantha	Rh4AG149600 Rh4AG149800 Rh4CG156800 Rh4CG157100 Rh4DG142600
rosa_wichuraiana	Rw0G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	399
AccII	CGCG	3 cut(s)	21, 225, 743
AciI	CCGC	9 cut(s)	58, 78, 81, 201, 223, 267, 307, 458, 743
AclWI	GGATC	2 cut(s)	298, 645
AcoI	YGGCCR	2 cut(s)	220, 256
AcyI	GRCGYC	1 cut(s)	396
AfaI	GTAC	2 cut(s)	149, 291
AfiI	CCNNNNNNNGG	3 cut(s)	97, 477, 604
AgsI	TTSAA	2 cut(s)	502, 553
AjnI	CCWGG	2 cut(s)	347, 544
AluBI	AGCT	2 cut(s)	313, 706
AluI	AGCT	2 cut(s)	313, 706
Alw21I	GWGCWC	1 cut(s)	33
Alw26I	GTCTC	3 cut(s)	149, 525, 544
AlwI	GGATC	2 cut(s)	298, 645
AoxI	GGCC	3 cut(s)	216, 220, 256
ApeKI	GCWGC	1 cut(s)	16
AspLEI	GCGC	4 cut(s)	21, 23, 213, 279
AspS9I	GGNCC	4 cut(s)	100, 294, 409, 585
AsuHPI	GGTGA	1 cut(s)	25
AvaII	GGWCC	4 cut(s)	100, 294, 409, 585
BanII	GRGCYC	1 cut(s)	484
Bbv12I	GWGCWC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	3 cut(s)	68, 271, 280
BcgI	CGANNNNNNTGC	4 cut(s)	298, 332, 418, 452
BciT130I	CCWGG	2 cut(s)	349, 546
BcoDI	GTCTC	3 cut(s)	149, 525, 544
BfmI	CTRYAG	1 cut(s)	710
BfoI	RGCGCY	1 cut(s)	280
BglI	GCCNNNNNGGC	1 cut(s)	264
BglII	AGATCT	2 cut(s)	679, 697
BisI	GCNGC	4 cut(s)	17, 81, 223, 268
BlsI	GCNGC	4 cut(s)	18, 82, 224, 269
Bme1390I	CCNGG	2 cut(s)	349, 546
Bme18I	GGWCC	4 cut(s)	100, 294, 409, 585
BmgT120I	GGNCC	4 cut(s)	100, 294, 409, 585
BmiI	GGNNCC	3 cut(s)	102, 410, 483
BmrFI	CCNGG	2 cut(s)	349, 546
BmrI	ACTGGG	1 cut(s)	225
BmsI	GCATC	1 cut(s)	204
BmuI	ACTGGG	1 cut(s)	225
BplI	GAGNNNNNCTC	2 cut(s)	356, 388
BpmI	CTGGAG	1 cut(s)	331
BpuEI	CTTGAG	2 cut(s)	383, 686
BsaBI	GATNNNNATC	1 cut(s)	636
BsaHI	GRCGYC	1 cut(s)	396
BsaI	GGTCTC	1 cut(s)	149
BsaWI	WCCGGW	1 cut(s)	97
BsaXI	ACNNNNNCTCC	4 cut(s)	522, 552, 738, 768
Bsc4I	CCNNNNNNNGG	3 cut(s)	97, 477, 604
Bse118I	RCCGGY	1 cut(s)	218
Bse1I	ACTGG	1 cut(s)	231
Bse8I	GATNNNNATC	1 cut(s)	636
BseBI	CCWGG	2 cut(s)	349, 546
BseGI	GGATG	2 cut(s)	658, 691
BseJI	GATNNNNATC	1 cut(s)	636
BseLI	CCNNNNNNNGG	3 cut(s)	97, 477, 604
BseMII	CTCAG	1 cut(s)	632
BseNI	ACTGG	1 cut(s)	231
BsePI	GCGCGC	1 cut(s)	19
BseRI	GAGGAG	2 cut(s)	80, 543
BseX3I	CGGCCG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	28
BsgI	GTGCAG	1 cut(s)	422
Bsh1236I	CGCG	3 cut(s)	21, 225, 743
Bsh1285I	CGRYCG	2 cut(s)	223, 331
BshFI	GGCC	3 cut(s)	218, 222, 258
BsiEI	CGRYCG	2 cut(s)	223, 331
BsiHKAI	GWGCWC	1 cut(s)	33
BsiSI	CCGG	4 cut(s)	98, 186, 219, 605
BslFI	GGGAC	2 cut(s)	155, 212
BslI	CCNNNNNNNGG	3 cut(s)	97, 477, 604
BsmAI	GTCTC	3 cut(s)	149, 525, 544
BsmBI	CGTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	155, 212
BsnI	GGCC	3 cut(s)	218, 222, 258
Bso31I	GGTCTC	1 cut(s)	149
Bsp1286I	GDGCHC	2 cut(s)	33, 484
Bsp143I	GATC	5 cut(s)	303, 637, 679, 697, 738
BspACI	CCGC	9 cut(s)	58, 78, 81, 201, 223, 267, 307, 458, 743
BspANI	GGCC	3 cut(s)	218, 222, 258
BspCNI	CTCAG	1 cut(s)	633
BspFNI	CGCG	3 cut(s)	21, 225, 743
BspLI	GGNNCC	3 cut(s)	102, 410, 483
BspMAI	CTGCAG	1 cut(s)	714
BspPI	GGATC	2 cut(s)	298, 645
BspTNI	GGTCTC	1 cut(s)	149
BsrFI	RCCGGY	1 cut(s)	218
BsrI	ACTGG	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	218
BssHII	GCGCGC	1 cut(s)	19
BssMI	GATC	5 cut(s)	303, 637, 679, 697, 738
BssNI	GRCGYC	1 cut(s)	396
Bst2UI	CCWGG	2 cut(s)	349, 546
Bst4CI	ACNGT	1 cut(s)	589
BstACI	GRCGYC	1 cut(s)	396
BstC8I	GCNNGC	4 cut(s)	21, 220, 260, 311
BstDEI	CTNAG	1 cut(s)	641
BstENI	CCTNNNNNAGG	1 cut(s)	475
BstF5I	GGATG	2 cut(s)	658, 691
BstFNI	CGCG	3 cut(s)	21, 225, 743
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	4 cut(s)	21, 23, 213, 279
BstKTI	GATC	5 cut(s)	306, 640, 682, 700, 741
BstMAI	GTCTC	3 cut(s)	149, 525, 544
BstMBI	GATC	5 cut(s)	303, 637, 679, 697, 738
BstMCI	CGRYCG	2 cut(s)	223, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	219, 264, 276, 452
BstNI	CCWGG	2 cut(s)	349, 546
BstSCI	CCNGG	2 cut(s)	347, 544
BstSFI	CTRYAG	1 cut(s)	710
BstUI	CGCG	3 cut(s)	21, 225, 743
BstV1I	GCAGC	1 cut(s)	28
BstX2I	RGATCY	4 cut(s)	303, 637, 679, 697
BstYI	RGATCY	4 cut(s)	303, 637, 679, 697
BstZI	CGGCCG	1 cut(s)	220
BsuRI	GGCC	3 cut(s)	218, 222, 258
BtsCI	GGATG	2 cut(s)	658, 691
Cac8I	GCNNGC	4 cut(s)	21, 220, 260, 311
CfoI	GCGC	4 cut(s)	21, 23, 213, 279
Cfr10I	RCCGGY	1 cut(s)	218
Cfr13I	GGNCC	4 cut(s)	100, 294, 409, 585
CseI	GACGC	2 cut(s)	214, 461
Csp6I	GTAC	2 cut(s)	148, 290
CviAII	CATG	1 cut(s)	491
CviQI	GTAC	2 cut(s)	148, 290
DdeI	CTNAG	1 cut(s)	641
DpnI	GATC	5 cut(s)	305, 639, 681, 699, 740
DpnII	GATC	5 cut(s)	303, 637, 679, 697, 738
EaeI	YGGCCR	2 cut(s)	220, 256
EagI	CGGCCG	1 cut(s)	220
EciI	GGCGGA	3 cut(s)	47, 67, 190
EclXI	CGGCCG	1 cut(s)	220
Eco24I	GRGCYC	1 cut(s)	484
Eco31I	GGTCTC	1 cut(s)	149
Eco47I	GGWCC	4 cut(s)	100, 294, 409, 585
Eco52I	CGGCCG	1 cut(s)	220
EcoNI	CCTNNNNNAGG	1 cut(s)	475
EcoRII	CCWGG	2 cut(s)	347, 544
EcoT38I	GRGCYC	1 cut(s)	484
Esp3I	CGTCTC	1 cut(s)	525
FaeI	CATG	1 cut(s)	494
FaiI	YATR	4 cut(s)	476, 492, 625, 627
FalI	AAGNNNNNCTT	2 cut(s)	469, 501
FaqI	GGGAC	2 cut(s)	155, 212
FatI	CATG	1 cut(s)	490
FauI	CCCGC	1 cut(s)	736
Fnu4HI	GCNGC	4 cut(s)	17, 81, 223, 268
FokI	GGATG	2 cut(s)	665, 678
FriOI	GRGCYC	1 cut(s)	484
FseI	GGCCGGCC	1 cut(s)	222
Fsp4HI	GCNGC	4 cut(s)	17, 81, 223, 268
GlaI	GCGC	4 cut(s)	20, 22, 212, 278
GluI	GCNGC	4 cut(s)	17, 81, 223, 268
GsuI	CTGGAG	1 cut(s)	331
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	218, 222, 258
HapII	CCGG	4 cut(s)	98, 186, 219, 605
HgaI	GACGC	2 cut(s)	214, 461
HhaI	GCGC	4 cut(s)	21, 23, 213, 279
Hin1I	GRCGYC	1 cut(s)	396
Hin1II	CATG	1 cut(s)	494
Hin6I	GCGC	4 cut(s)	19, 21, 211, 277
HinP1I	GCGC	4 cut(s)	19, 21, 211, 277
HincII	GTYRAC	1 cut(s)	658
HindII	GTYRAC	1 cut(s)	658
HindIII	AAGCTT	1 cut(s)	704
HinfI	GANTC	5 cut(s)	113, 383, 430, 616, 785
HpaI	GTTAAC	1 cut(s)	658
HpaII	CCGG	4 cut(s)	98, 186, 219, 605
HphI	GGTGA	1 cut(s)	25
Hpy166II	GTNNAC	1 cut(s)	658
Hpy188I	TCNGA	4 cut(s)	376, 388, 642, 760
Hpy188III	TCNNGA	4 cut(s)	10, 130, 580, 695
Hpy8I	GTNNAC	1 cut(s)	658
Hpy99I	CGWCG	3 cut(s)	320, 398, 451
HpyAV	CCTTC	3 cut(s)	136, 481, 495
HpyCH4III	ACNGT	1 cut(s)	589
HpyCH4IV	ACGT	1 cut(s)	396
HpyCH4V	TGCA	2 cut(s)	439, 712
HpyF10VI	GCNNNNNNNGC	4 cut(s)	219, 264, 276, 452
HpyF3I	CTNAG	1 cut(s)	641
HpySE526I	ACGT	1 cut(s)	396
Hsp92I	GRCGYC	1 cut(s)	396
Hsp92II	CATG	1 cut(s)	494
HspAI	GCGC	4 cut(s)	19, 21, 211, 277
KroI	GCCGGC	1 cut(s)	218
KroNI	GCCGGC	1 cut(s)	220
KspAI	GTTAAC	1 cut(s)	658
Kzo9I	GATC	5 cut(s)	303, 637, 679, 697, 738
LmnI	GCTCC	3 cut(s)	377, 487, 746
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	1 cut(s)	204
MaeII	ACGT	1 cut(s)	396
MaeIII	GTNAC	1 cut(s)	466
MalI	GATC	5 cut(s)	305, 639, 681, 699, 740
MboI	GATC	5 cut(s)	303, 637, 679, 697, 738
MboII	GAAGA	4 cut(s)	154, 232, 331, 565
MflI	RGATCY	4 cut(s)	303, 637, 679, 697
MhlI	GDGCHC	2 cut(s)	33, 484
MlyI	GAGTC	1 cut(s)	779
MmeI	TCCRAC	4 cut(s)	76, 118, 399, 630
MroNI	GCCGGC	1 cut(s)	218
MseI	TTAA	1 cut(s)	657
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	4 cut(s)	98, 186, 219, 605
MspR9I	CCNGG	2 cut(s)	349, 546
MvaI	CCWGG	2 cut(s)	349, 546
MvnI	CGCG	3 cut(s)	21, 225, 743
MwoI	GCNNNNNNNGC	4 cut(s)	219, 264, 276, 452
NaeI	GCCGGC	1 cut(s)	220
NdeII	GATC	5 cut(s)	303, 637, 679, 697, 738
NgoMIV	GCCGGC	1 cut(s)	218
NlaIII	CATG	1 cut(s)	494
NlaIV	GGNNCC	3 cut(s)	102, 410, 483
NmeAIII	GCCGAG	1 cut(s)	178
NmuCI	GTSAC	1 cut(s)	466
PauI	GCGCGC	1 cut(s)	19
PdiI	GCCGGC	1 cut(s)	220
PfeI	GAWTC	4 cut(s)	113, 383, 430, 616
PflFI	GACNNNGTC	1 cut(s)	536
PfoI	TCCNGGA	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	18, 82, 224, 269
PleI	GAGTC	1 cut(s)	779
PpsI	GAGTC	1 cut(s)	779
Psp6I	CCWGG	2 cut(s)	347, 544
PspGI	CCWGG	2 cut(s)	347, 544
PspN4I	GGNNCC	3 cut(s)	102, 410, 483
PspPI	GGNCC	4 cut(s)	100, 294, 409, 585
PstI	CTGCAG	1 cut(s)	714
PsuI	RGATCY	4 cut(s)	303, 637, 679, 697
PsyI	GACNNNGTC	1 cut(s)	536
PteI	GCGCGC	1 cut(s)	19
RigI	GGCCGGCC	1 cut(s)	222
RsaI	GTAC	2 cut(s)	149, 291
RsaNI	GTAC	2 cut(s)	148, 290
SaqAI	TTAA	1 cut(s)	657
SatI	GCNGC	4 cut(s)	17, 81, 223, 268
Sau3AI	GATC	5 cut(s)	303, 637, 679, 697, 738
Sau96I	GGNCC	4 cut(s)	100, 294, 409, 585
SchI	GAGTC	1 cut(s)	779
ScrFI	CCNGG	2 cut(s)	349, 546
SduI	GDGCHC	2 cut(s)	33, 484
SetI	ASST	7 cut(s)	125, 315, 363, 369, 399, 473, 708
SfaNI	GCATC	1 cut(s)	204
SfcI	CTRYAG	1 cut(s)	710
SinI	GGWCC	4 cut(s)	100, 294, 409, 585
SmlI	CTYRAG	2 cut(s)	362, 701
SmoI	CTYRAG	2 cut(s)	362, 701
SsiI	CCGC	9 cut(s)	58, 78, 81, 201, 223, 267, 307, 458, 743
StyD4I	CCNGG	2 cut(s)	347, 544
TaaI	ACNGT	1 cut(s)	589
TaiI	ACGT	1 cut(s)	399
TaqI	TCGA	6 cut(s)	111, 243, 381, 428, 507, 526
TaqII	GACCGA	2 cut(s)	308, 317
TauI	GCSGC	3 cut(s)	83, 225, 270
TfiI	GAWTC	4 cut(s)	113, 383, 430, 616
Tru1I	TTAA	1 cut(s)	657
Tru9I	TTAA	1 cut(s)	657
TseFI	GTSAC	1 cut(s)	466
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	466
TspDTI	ATGAA	3 cut(s)	422, 463, 680
TspGWI	ACGGA	4 cut(s)	16, 307, 401, 464
Tth111I	GACNNNGTC	1 cut(s)	536
VpaK11BI	GGWCC	4 cut(s)	100, 294, 409, 585
XagI	CCTNNNNNAGG	1 cut(s)	475
ZraI	GACGTC	1 cut(s)	397

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.