Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0008450

Physical Location & Seq

Genomic Coordinates Reverse (-)

37750038 .. 37754505

Gene Structure 4468 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG149800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

ATGTTCCTCCTCCAGCGGCGTTGCGCCTCCGCGCTCTCCACACCCCTCCAGCTCCGCCGCTACACCCAATCCGCCGCAGCCGCTCTCGTCGACGACGATTCCAACCTGGAGTCCTTCGCCCGACCCGAACCAAAATACGACGAGACCATCCTTGCCGTCCCGCGCTTAACCTCCGGCAAAAGCATCGCCGCCAAAGAGCGGAAGGCCGGCCCCGTCCCCGTCCCCGGCATCATCTTCGAGCAAGAGGACGGCCAGCACGGCGGCAATAAACGACTCATCTCCGTCCGCACGAACCAGATCCGCAAGCTCCTCAATCATCTCGGCCGCTCTTTCTTCCTCTCCCGCCTCTTCCACCTCGAGGTCCGCTCCGACTTCGATGCAGACGACGTCGTTGAGAAAGTCCGCGTTTTACCGTGCTTGATTCATCTACACTCGAGCACCGATGCTCCGCTTAATGTGACCTTCATAAGGGCCCCTTCAAATGCTTTGTTGAAAGTCGAAATTCCTCTTGTATTCAGAGGAGATGATATCTCTCCTGGATTGAAGAAAGTTTTTGCCAGAACCGAGGACAAACATGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

193

Amino Acids

21.51

Weight (kDa)

9.39

Isoelectric Point (pI)

48.64

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23620 AT4G23620
fragaria_vesca	FvH4_4g11490
malus_domestica	MD12G1010000.v1.1 MD14G1007200.v1.1
prunus_persica	Prupe.1G080900_v2.0.a1 Prupe.1G080900_v2.0.a1 Prupe.1G563200_v2.0.a1
pyrus_communis	pycom12g00760 pycom14g00570
rosa_chinensis	RchiOBHm_Chr4g0408271 RchiOBHm_Chr4g0408291
rosa_laevigata	RLG00000008657
rosa_multiflora	Rmu_sc0018903.1_g000008
rosa_roxburghii	Rroxscaffold_5G00352790 Rroxscaffold_5G00352830
rosa_rugosa	Rorug04G0085100
rosa_samantha	Rh4AG149600 Rh4AG149800 Rh4CG156800 Rh4CG157100 Rh4DG142600
rosa_wichuraiana	Rw0G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	390
AbsI	CCTCGAGG	1 cut(s)	356
AccBSI	CCGCTC	4 cut(s)	83, 199, 327, 366
AccI	GTMKAC	1 cut(s)	90
AccII	CGCG	3 cut(s)	32, 163, 405
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	250, 322
AcsI	RAATTY	1 cut(s)	501
AcyI	GRCGYC	1 cut(s)	387
AfiI	CCNNNNNNNGG	4 cut(s)	198, 224, 358, 468
AgsI	TTSAA	3 cut(s)	480, 493, 544
AjnI	CCWGG	2 cut(s)	105, 535
AluBI	AGCT	2 cut(s)	52, 307
AluI	AGCT	2 cut(s)	52, 307
Alw21I	GWGCWC	1 cut(s)	440
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	292
Ama87I	CYCGRG	2 cut(s)	356, 433
AoxI	GGCC	5 cut(s)	204, 208, 250, 322, 471
ApaI	GGGCCC	1 cut(s)	475
ApeKI	GCWGC	1 cut(s)	77
ApoI	RAATTY	1 cut(s)	501
AspLEI	GCGC	3 cut(s)	26, 34, 165
AspS9I	GGNCC	4 cut(s)	209, 361, 471, 472
AsuC2I	CCSGG	1 cut(s)	225
AvaI	CYCGRG	2 cut(s)	356, 433
AvaII	GGWCC	1 cut(s)	361
BaeGI	GKGCMC	1 cut(s)	475
BanII	GRGCYC	1 cut(s)	475
Bbv12I	GWGCWC	1 cut(s)	440
BbvI	GCAGC	1 cut(s)	89
BccI	CCATC	1 cut(s)	155
BceAI	ACGGC	3 cut(s)	140, 265, 274
BcgI	CGANNNNNNTGC	6 cut(s)	166, 200, 217, 251, 359, 393
BciT130I	CCWGG	2 cut(s)	107, 537
BcnI	CCSGG	1 cut(s)	225
BcoDI	GTCTC	1 cut(s)	137
BglI	GCCNNNNNGGC	1 cut(s)	258
BisI	GCNGC	8 cut(s)	17, 58, 75, 78, 81, 189, 262, 325
BlsI	GCNGC	8 cut(s)	18, 59, 76, 79, 82, 190, 263, 326
Bme1390I	CCNGG	3 cut(s)	107, 225, 537
Bme18I	GGWCC	1 cut(s)	361
BmeT110I	CYCGRG	2 cut(s)	356, 433
BmgT120I	GGNCC	4 cut(s)	209, 361, 471, 472
BmiI	GGNNCC	3 cut(s)	211, 473, 474
BmrFI	CCNGG	3 cut(s)	107, 225, 537
BmsI	GCATC	4 cut(s)	192, 237, 367, 433
BplI	GAGNNNNNCTC	2 cut(s)	350, 382
BpmI	CTGGAG	2 cut(s)	32, 128
BpuMI	CCSGG	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	387
BsaI	GGTCTC	1 cut(s)	137
BsaJI	CCNNGG	2 cut(s)	223, 564
BsaXI	ACNNNNNCTCC	2 cut(s)	430, 460
Bsc4I	CCNNNNNNNGG	4 cut(s)	198, 224, 358, 468
Bse118I	RCCGGY	1 cut(s)	206
BseBI	CCWGG	2 cut(s)	107, 537
BseDI	CCNNGG	2 cut(s)	223, 564
BseGI	GGATG	1 cut(s)	147
BseLI	CCNNNNNNNGG	4 cut(s)	198, 224, 358, 468
BseRI	GAGGAG	2 cut(s)	299, 534
BseSI	GKGCMC	1 cut(s)	475
BseX3I	CGGCCG	1 cut(s)	322
BseXI	GCAGC	1 cut(s)	89
Bsh1236I	CGCG	3 cut(s)	32, 163, 405
Bsh1285I	CGRYCG	1 cut(s)	325
BshFI	GGCC	5 cut(s)	206, 210, 252, 324, 473
BsiEI	CGRYCG	1 cut(s)	325
BsiHKAI	GWGCWC	1 cut(s)	440
BsiHKCI	CYCGRG	2 cut(s)	356, 433
BsiSI	CCGG	3 cut(s)	174, 207, 225
BslFI	GGGAC	3 cut(s)	143, 200, 206
BslI	CCNNNNNNNGG	4 cut(s)	198, 224, 358, 468
BsmAI	GTCTC	1 cut(s)	137
BsmFI	GGGAC	3 cut(s)	143, 200, 206
BsnI	GGCC	5 cut(s)	206, 210, 252, 324, 473
Bso31I	GGTCTC	1 cut(s)	137
BsoBI	CYCGRG	2 cut(s)	356, 433
Bsp120I	GGGCCC	1 cut(s)	471
Bsp1286I	GDGCHC	2 cut(s)	440, 475
Bsp143I	GATC	1 cut(s)	297
BspANI	GGCC	5 cut(s)	206, 210, 252, 324, 473
BspFNI	CGCG	3 cut(s)	32, 163, 405
BspLI	GGNNCC	3 cut(s)	211, 473, 474
BspPI	GGATC	1 cut(s)	292
BspTNI	GGTCTC	1 cut(s)	137
BsrBI	CCGCTC	4 cut(s)	83, 199, 327, 366
BsrFI	RCCGGY	1 cut(s)	206
BssAI	RCCGGY	1 cut(s)	206
BssECI	CCNNGG	2 cut(s)	223, 564
BssMI	GATC	1 cut(s)	297
BssNI	GRCGYC	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	107, 537
Bst4CI	ACNGT	1 cut(s)	414
Bst6I	CTCTTC	1 cut(s)	353
BstACI	GRCGYC	1 cut(s)	387
BstC8I	GCNNGC	3 cut(s)	208, 254, 305
BstENI	CCTNNNNNAGG	1 cut(s)	466
BstF5I	GGATG	1 cut(s)	147
BstFNI	CGCG	3 cut(s)	32, 163, 405
BstHHI	GCGC	3 cut(s)	26, 34, 165
BstKTI	GATC	1 cut(s)	300
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	1 cut(s)	297
BstMCI	CGRYCG	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 258
BstNI	CCWGG	2 cut(s)	107, 537
BstSCI	CCNGG	3 cut(s)	105, 223, 535
BstSLI	GKGCMC	1 cut(s)	475
BstUI	CGCG	3 cut(s)	32, 163, 405
BstV1I	GCAGC	1 cut(s)	89
BstX2I	RGATCY	1 cut(s)	297
BstYI	RGATCY	1 cut(s)	297
BstZI	CGGCCG	1 cut(s)	322
BsuRI	GGCC	5 cut(s)	206, 210, 252, 324, 473
BtgZI	GCGATG	1 cut(s)	169
BtsCI	GGATG	1 cut(s)	147
Cac8I	GCNNGC	3 cut(s)	208, 254, 305
CfoI	GCGC	3 cut(s)	26, 34, 165
Cfr10I	RCCGGY	1 cut(s)	206
Cfr13I	GGNCC	4 cut(s)	209, 361, 471, 472
CviAII	CATG	1 cut(s)	575
CviJI	RGCY	8 cut(s)	52, 80, 206, 210, 252, 307, 324, 473
CviKI_1	RGCY	8 cut(s)	52, 80, 206, 210, 252, 307, 324, 473
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
EaeI	YGGCCR	2 cut(s)	250, 322
EagI	CGGCCG	1 cut(s)	322
Eam1104I	CTCTTC	1 cut(s)	353
EarI	CTCTTC	1 cut(s)	353
EciI	GGCGGA	2 cut(s)	44, 61
EclXI	CGGCCG	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	137
Eco32I	GATATC	1 cut(s)	529
Eco47I	GGWCC	1 cut(s)	361
Eco52I	CGGCCG	1 cut(s)	322
Eco88I	CYCGRG	2 cut(s)	356, 433
EcoNI	CCTNNNNNAGG	1 cut(s)	466
EcoO109I	RGGNCCY	2 cut(s)	471, 472
EcoRII	CCWGG	2 cut(s)	105, 535
EcoRV	GATATC	1 cut(s)	529
EcoT38I	GRGCYC	1 cut(s)	475
FaeI	CATG	1 cut(s)	578
FaiI	YATR	2 cut(s)	467, 576
FalI	AAGNNNNNCTT	2 cut(s)	460, 492
FaqI	GGGAC	3 cut(s)	143, 200, 206
FatI	CATG	1 cut(s)	574
FauI	CCCGC	2 cut(s)	168, 350
FblI	GTMKAC	1 cut(s)	90
Fnu4HI	GCNGC	8 cut(s)	17, 58, 75, 78, 81, 189, 262, 325
FokI	GGATG	1 cut(s)	134
FriOI	GRGCYC	1 cut(s)	475
FseI	GGCCGGCC	1 cut(s)	210
Fsp4HI	GCNGC	8 cut(s)	17, 58, 75, 78, 81, 189, 262, 325
GlaI	GCGC	3 cut(s)	25, 33, 164
GluI	GCNGC	8 cut(s)	17, 58, 75, 78, 81, 189, 262, 325
GsuI	CTGGAG	2 cut(s)	32, 128
HaeIII	GGCC	5 cut(s)	206, 210, 252, 324, 473
HapII	CCGG	3 cut(s)	174, 207, 225
HhaI	GCGC	3 cut(s)	26, 34, 165
Hin1I	GRCGYC	1 cut(s)	387
Hin1II	CATG	1 cut(s)	578
Hin6I	GCGC	3 cut(s)	24, 32, 163
HinP1I	GCGC	3 cut(s)	24, 32, 163
HincII	GTYRAC	1 cut(s)	91
HindII	GTYRAC	1 cut(s)	91
HinfI	GANTC	4 cut(s)	98, 110, 273, 421
HpaII	CCGG	3 cut(s)	174, 207, 225
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	2 cut(s)	370, 518
Hpy8I	GTNNAC	1 cut(s)	91
Hpy99I	CGWCG	6 cut(s)	92, 95, 98, 143, 389, 392
HpyAV	CCTTC	4 cut(s)	124, 196, 472, 486
HpyCH4III	ACNGT	1 cut(s)	414
HpyCH4IV	ACGT	1 cut(s)	387
HpyCH4V	TGCA	1 cut(s)	380
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 258
HpySE526I	ACGT	1 cut(s)	387
Hsp92I	GRCGYC	1 cut(s)	387
Hsp92II	CATG	1 cut(s)	578
HspAI	GCGC	3 cut(s)	24, 32, 163
KroI	GCCGGC	1 cut(s)	206
KroNI	GCCGGC	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	4 cut(s)	57, 312, 371, 451
Lsp1109I	GCAGC	1 cut(s)	89
LweI	GCATC	4 cut(s)	192, 237, 367, 433
MaeII	ACGT	1 cut(s)	387
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	1 cut(s)	299
MbiI	CCGCTC	4 cut(s)	83, 199, 327, 366
MboI	GATC	1 cut(s)	297
MboII	GAAGA	4 cut(s)	226, 325, 340, 556
MflI	RGATCY	1 cut(s)	297
MhlI	GDGCHC	2 cut(s)	440, 475
MluCI	AATT	1 cut(s)	501
MlyI	GAGTC	2 cut(s)	119, 267
MmeI	TCCRAC	2 cut(s)	126, 393
MroNI	GCCGGC	1 cut(s)	206
MseI	TTAA	2 cut(s)	167, 453
MspA1I	CMGCKG	1 cut(s)	16
MspI	CCGG	3 cut(s)	174, 207, 225
MspR9I	CCNGG	3 cut(s)	107, 225, 537
MvaI	CCWGG	2 cut(s)	107, 537
MvnI	CGCG	3 cut(s)	32, 163, 405
MwoI	GCNNNNNNNGC	2 cut(s)	80, 258
NaeI	GCCGGC	1 cut(s)	208
NciI	CCSGG	1 cut(s)	225
NdeII	GATC	1 cut(s)	297
NgoMIV	GCCGGC	1 cut(s)	206
NlaIII	CATG	1 cut(s)	578
NlaIV	GGNNCC	3 cut(s)	211, 473, 474
NmeAIII	GCCGAG	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	457
PaeR7I	CTCGAG	2 cut(s)	356, 433
PcsI	WCGNNNNNNNCGW	3 cut(s)	93, 123, 381
PdiI	GCCGGC	1 cut(s)	208
PfeI	GAWTC	2 cut(s)	98, 421
PflFI	GACNNNGTC	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	535
PkrI	GCNGC	8 cut(s)	18, 59, 76, 79, 82, 190, 263, 326
PleI	GAGTC	2 cut(s)	118, 267
PpsI	GAGTC	2 cut(s)	118, 267
Psp6I	CCWGG	2 cut(s)	105, 535
PspGI	CCWGG	2 cut(s)	105, 535
PspN4I	GGNNCC	3 cut(s)	211, 473, 474
PspOMI	GGGCCC	1 cut(s)	471
PspPI	GGNCC	4 cut(s)	209, 361, 471, 472
PspXI	VCTCGAGB	2 cut(s)	356, 433
PsuI	RGATCY	1 cut(s)	297
PsyI	GACNNNGTC	1 cut(s)	386
RigI	GGCCGGCC	1 cut(s)	210
SalI	GTCGAC	1 cut(s)	89
SaqAI	TTAA	2 cut(s)	167, 453
SatI	GCNGC	8 cut(s)	17, 58, 75, 78, 81, 189, 262, 325
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	4 cut(s)	209, 361, 471, 472
SchI	GAGTC	2 cut(s)	119, 267
ScrFI	CCNGG	3 cut(s)	107, 225, 537
SduI	GDGCHC	2 cut(s)	440, 475
SetI	ASST	8 cut(s)	54, 108, 173, 309, 357, 363, 390, 464
SfaNI	GCATC	4 cut(s)	192, 237, 367, 433
Sfr274I	CTCGAG	2 cut(s)	356, 433
SgrDI	CGTCGACG	1 cut(s)	89
SinI	GGWCC	1 cut(s)	361
SlaI	CTCGAG	2 cut(s)	356, 433
SmlI	CTYRAG	2 cut(s)	356, 433
SmoI	CTYRAG	2 cut(s)	356, 433
Sse9I	AATT	1 cut(s)	501
StyD4I	CCNGG	3 cut(s)	105, 223, 535
TaaI	ACNGT	1 cut(s)	414
TaiI	ACGT	1 cut(s)	390
TaqI	TCGA	6 cut(s)	90, 237, 357, 375, 434, 498
TasI	AATT	1 cut(s)	501
TauI	GCSGC	7 cut(s)	19, 60, 77, 83, 191, 264, 327
TfiI	GAWTC	2 cut(s)	98, 421
Tru1I	TTAA	2 cut(s)	167, 453
Tru9I	TTAA	2 cut(s)	167, 453
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	77
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	2 cut(s)	413, 454
TspGWI	ACGGA	1 cut(s)	271
Tth111I	GACNNNGTC	1 cut(s)	386
VpaK11BI	GGWCC	1 cut(s)	361
XagI	CCTNNNNNAGG	1 cut(s)	466
XapI	RAATTY	1 cut(s)	501
XhoI	CTCGAG	2 cut(s)	356, 433
XmiI	GTMKAC	1 cut(s)	90
ZraI	GACGTC	1 cut(s)	388

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.