Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008450

Physical Location & Seq

Genomic Coordinates Reverse (-)

15246020 .. 15248775

Gene Structure 2756 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g11490.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTTGCTTCAGCGACGTTGCCTCTCCGCCCCCCTCCAACTCCGCCGCTACGCCCAATCCGCCGCAGCCGCCCTCGTCGACGATTCCGACCCGGACTCCTTCCCCCGACCCGACCCGAAATACGACGAGACCATCCTCGCCGTCCCGCGCTTAACCTCCGGCAAAAGCATCGCCGCGAAAGAGCGGAAGGCCGGGCGCGTCCCTAGCATCATCTTCGAGCAGGAGGATGGCCAGTACGGCGGCAACAAGCGCCTCATCTCCGTCCGCACCAACCAGATCCGCAAGCTCGTCAATCAGCTCGGCCGCTCCTTCTTCCTCTCCCGCCTCTACAGCCTCGAGGTCCGCTCCGACTTCGAATGCGACGACGTCATTGAGAGAGTCCGTGTTTTGCCGCGCTTGCTTCAATTGCACTCGAGCACCGACGCTCCGCTTAATGTGACCTTCATTCGGGCCCCTTCGGATGCTTTGTTGAAGGTCGAAATTCCTCTTGTGTTTATTGGAGATGATATCTCTCCTGGATTGAAGAAAGGTGCATATTTAAATACAATCAATAGGACGGTAAAGTTCCTTTGCCCAGCAGATGTAATTCCTCCGTATATTGAAGTTGATCTGAGTGAGTTGGATGTTGGCCAAAAGCTAGTAATGGGAGACCTCAAGGCTCATCCGACTCTGAAGCTTATTCAGTCAAAAGATGAGCCCATTTGTAAGATCATGGGTTCAAGAGTTTCCGACCAACAAAAGAAAACTAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

251

Amino Acids

27.97

Weight (kDa)

9.23

Isoelectric Point (pI)

48.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_L25p	PF01386	47 - 148	1.8e-08	Ribosomal L25p family
Ribosomal_TL5_C	PF14693	157 - 240	2.6e-20	Ribosomal protein TL5, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23620 AT4G23620
fragaria_vesca	FvH4_4g11490
malus_domestica	MD12G1010000.v1.1 MD14G1007200.v1.1
prunus_persica	Prupe.1G080900_v2.0.a1 Prupe.1G080900_v2.0.a1 Prupe.1G563200_v2.0.a1
pyrus_communis	pycom12g00760 pycom14g00570
rosa_chinensis	RchiOBHm_Chr4g0408271 RchiOBHm_Chr4g0408291
rosa_laevigata	RLG00000008657
rosa_multiflora	Rmu_sc0018903.1_g000008
rosa_roxburghii	Rroxscaffold_5G00352790 Rroxscaffold_5G00352830
rosa_rugosa	Rorug04G0085100
rosa_samantha	Rh4AG149600 Rh4AG149800 Rh4CG156800 Rh4CG157100 Rh4DG142600
rosa_wichuraiana	Rw0G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	369
AbsI	CCTCGAGG	1 cut(s)	335
AccBSI	CCGCTC	3 cut(s)	184, 306, 345
AccI	GTMKAC	1 cut(s)	78
AccII	CGCG	4 cut(s)	148, 176, 198, 394
AclWI	GGATC	1 cut(s)	271
AcoI	YGGCCR	3 cut(s)	229, 301, 628
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	692
AcyI	GRCGYC	1 cut(s)	366
AfaI	GTAC	1 cut(s)	236
AfiI	CCNNNNNNNGG	1 cut(s)	447
AgsI	TTSAA	5 cut(s)	404, 472, 523, 602, 720
AjnI	CCWGG	1 cut(s)	514
AluBI	AGCT	4 cut(s)	286, 298, 637, 676
AluI	AGCT	4 cut(s)	286, 298, 637, 676
Alw21I	GWGCWC	1 cut(s)	419
Alw26I	GTCTC	2 cut(s)	122, 642
AlwI	GGATC	1 cut(s)	271
Ama87I	CYCGRG	2 cut(s)	335, 412
AoxI	GGCC	5 cut(s)	189, 229, 301, 450, 628
ApaI	GGGCCC	1 cut(s)	454
ApeKI	GCWGC	1 cut(s)	65
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	4 cut(s)	150, 198, 252, 396
AspS9I	GGNCC	3 cut(s)	340, 450, 451
AsuC2I	CCSGG	2 cut(s)	92, 193
AsuII	TTCGAA	1 cut(s)	354
AvaI	CYCGRG	2 cut(s)	335, 412
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	454
BalI	TGGCCA	2 cut(s)	231, 630
BanII	GRGCYC	2 cut(s)	454, 699
Bbv12I	GWGCWC	1 cut(s)	419
BbvI	GCAGC	1 cut(s)	77
BccI	CCATC	2 cut(s)	140, 221
BceAI	ACGGC	2 cut(s)	125, 253
BcgI	CGANNNNNNTGC	4 cut(s)	151, 185, 196, 230
BciT130I	CCWGG	1 cut(s)	516
BcnI	CCSGG	2 cut(s)	92, 193
BcoDI	GTCTC	2 cut(s)	122, 642
BfaI	CTAG	2 cut(s)	204, 638
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	253
BglI	GCCNNNNNGGC	1 cut(s)	237
BisI	GCNGC	8 cut(s)	46, 63, 66, 69, 174, 241, 304, 392
BlsI	GCNGC	8 cut(s)	47, 64, 67, 70, 175, 242, 305, 393
Bme1390I	CCNGG	3 cut(s)	92, 193, 516
Bme18I	GGWCC	1 cut(s)	340
BmeT110I	CYCGRG	2 cut(s)	335, 412
BmgT120I	GGNCC	3 cut(s)	340, 450, 451
BmiI	GGNNCC	2 cut(s)	452, 453
BmrFI	CCNGG	3 cut(s)	92, 193, 516
BmsI	GCATC	3 cut(s)	177, 216, 451
BplI	GAGNNNNNCTC	2 cut(s)	329, 361
Bpu14I	TTCGAA	1 cut(s)	354
BpuEI	CTTGAG	1 cut(s)	638
BpuMI	CCSGG	2 cut(s)	92, 193
BsaHI	GRCGYC	1 cut(s)	366
BsaI	GGTCTC	2 cut(s)	122, 642
BsaXI	ACNNNNNCTCC	4 cut(s)	80, 110, 409, 439
Bsc4I	CCNNNNNNNGG	1 cut(s)	447
Bse1I	ACTGG	1 cut(s)	232
BseBI	CCWGG	1 cut(s)	516
BseGI	GGATG	5 cut(s)	132, 232, 466, 628, 661
BseLI	CCNNNNNNNGG	1 cut(s)	447
BseMII	CTCAG	1 cut(s)	602
BseNI	ACTGG	1 cut(s)	232
BseSI	GKGCMC	1 cut(s)	454
BseX3I	CGGCCG	1 cut(s)	301
BseXI	GCAGC	1 cut(s)	77
BseYI	CCCAGC	1 cut(s)	574
Bsh1236I	CGCG	4 cut(s)	148, 176, 198, 394
Bsh1285I	CGRYCG	1 cut(s)	304
BshFI	GGCC	5 cut(s)	191, 231, 303, 452, 630
BsiEI	CGRYCG	1 cut(s)	304
BsiHKAI	GWGCWC	1 cut(s)	419
BsiHKCI	CYCGRG	2 cut(s)	335, 412
BsiSI	CCGG	3 cut(s)	92, 159, 192
BslFI	GGGAC	2 cut(s)	128, 185
BslI	CCNNNNNNNGG	1 cut(s)	447
BsmAI	GTCTC	2 cut(s)	122, 642
BsmFI	GGGAC	2 cut(s)	128, 185
BsmI	GAATGC	1 cut(s)	362
BsnI	GGCC	5 cut(s)	191, 231, 303, 452, 630
Bso31I	GGTCTC	2 cut(s)	122, 642
BsoBI	CYCGRG	2 cut(s)	335, 412
Bsp119I	TTCGAA	1 cut(s)	354
Bsp120I	GGGCCC	1 cut(s)	450
Bsp1286I	GDGCHC	3 cut(s)	419, 454, 699
Bsp143I	GATC	3 cut(s)	276, 607, 708
BspANI	GGCC	5 cut(s)	191, 231, 303, 452, 630
BspCNI	CTCAG	1 cut(s)	603
BspFNI	CGCG	4 cut(s)	148, 176, 198, 394
BspLI	GGNNCC	2 cut(s)	452, 453
BspPI	GGATC	1 cut(s)	271
BspT104I	TTCGAA	1 cut(s)	354
BspTNI	GGTCTC	2 cut(s)	122, 642
BsrBI	CCGCTC	3 cut(s)	184, 306, 345
BsrI	ACTGG	1 cut(s)	232
BssMI	GATC	3 cut(s)	276, 607, 708
BssNI	GRCGYC	1 cut(s)	366
Bst2UI	CCWGG	1 cut(s)	516
Bst4CI	ACNGT	1 cut(s)	559
BstACI	GRCGYC	1 cut(s)	366
BstBI	TTCGAA	1 cut(s)	354
BstC8I	GCNNGC	2 cut(s)	284, 398
BstDEI	CTNAG	1 cut(s)	611
BstF5I	GGATG	5 cut(s)	132, 232, 466, 628, 661
BstFNI	CGCG	4 cut(s)	148, 176, 198, 394
BstH2I	RGCGCY	1 cut(s)	253
BstHHI	GCGC	4 cut(s)	150, 198, 252, 396
BstKTI	GATC	3 cut(s)	279, 610, 711
BstMAI	GTCTC	2 cut(s)	122, 642
BstMBI	GATC	3 cut(s)	276, 607, 708
BstMCI	CGRYCG	1 cut(s)	304
BstMWI	GCNNNNNNNGC	8 cut(s)	59, 68, 204, 237, 249, 330, 397, 406
BstNI	CCWGG	1 cut(s)	516
BstSCI	CCNGG	3 cut(s)	90, 191, 514
BstSFI	CTRYAG	1 cut(s)	328
BstSLI	GKGCMC	1 cut(s)	454
BstUI	CGCG	4 cut(s)	148, 176, 198, 394
BstV1I	GCAGC	1 cut(s)	77
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BstZI	CGGCCG	1 cut(s)	301
BsuRI	GGCC	5 cut(s)	191, 231, 303, 452, 630
BtgZI	GCGATG	1 cut(s)	154
BtsCI	GGATG	5 cut(s)	132, 232, 466, 628, 661
Cac8I	GCNNGC	2 cut(s)	284, 398
CfoI	GCGC	4 cut(s)	150, 198, 252, 396
Cfr13I	GGNCC	3 cut(s)	340, 450, 451
CseI	GACGC	2 cut(s)	187, 431
Csp6I	GTAC	1 cut(s)	235
CviAII	CATG	1 cut(s)	712
CviQI	GTAC	1 cut(s)	235
DdeI	CTNAG	1 cut(s)	611
DpnI	GATC	3 cut(s)	278, 609, 710
DpnII	GATC	3 cut(s)	276, 607, 708
DraI	TTTAAA	1 cut(s)	540
EaeI	YGGCCR	3 cut(s)	229, 301, 628
EagI	CGGCCG	1 cut(s)	301
EciI	GGCGGA	3 cut(s)	16, 32, 49
EclXI	CGGCCG	1 cut(s)	301
Eco24I	GRGCYC	2 cut(s)	454, 699
Eco31I	GGTCTC	2 cut(s)	122, 642
Eco32I	GATATC	1 cut(s)	508
Eco47I	GGWCC	1 cut(s)	340
Eco52I	CGGCCG	1 cut(s)	301
Eco57I	CTGAAG	1 cut(s)	692
Eco88I	CYCGRG	2 cut(s)	335, 412
EcoO109I	RGGNCCY	1 cut(s)	451
EcoRII	CCWGG	1 cut(s)	514
EcoRV	GATATC	1 cut(s)	508
EcoT38I	GRGCYC	2 cut(s)	454, 699
FaeI	CATG	1 cut(s)	715
FaiI	YATR	3 cut(s)	535, 597, 713
FaqI	GGGAC	2 cut(s)	128, 185
FatI	CATG	1 cut(s)	711
FauI	CCCGC	2 cut(s)	153, 329
FblI	GTMKAC	1 cut(s)	78
Fnu4HI	GCNGC	8 cut(s)	46, 63, 66, 69, 174, 241, 304, 392
FokI	GGATG	5 cut(s)	119, 239, 473, 635, 648
FriOI	GRGCYC	2 cut(s)	454, 699
Fsp4HI	GCNGC	8 cut(s)	46, 63, 66, 69, 174, 241, 304, 392
FspBI	CTAG	2 cut(s)	204, 638
GlaI	GCGC	4 cut(s)	149, 197, 251, 395
GluI	GCNGC	8 cut(s)	46, 63, 66, 69, 174, 241, 304, 392
GsaI	CCCAGC	1 cut(s)	578
HaeII	RGCGCY	1 cut(s)	253
HaeIII	GGCC	5 cut(s)	191, 231, 303, 452, 630
HapII	CCGG	3 cut(s)	92, 159, 192
HgaI	GACGC	2 cut(s)	187, 431
HhaI	GCGC	4 cut(s)	150, 198, 252, 396
Hin1I	GRCGYC	1 cut(s)	366
Hin1II	CATG	1 cut(s)	715
Hin6I	GCGC	4 cut(s)	148, 196, 250, 394
HinP1I	GCGC	4 cut(s)	148, 196, 250, 394
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	674
HinfI	GANTC	4 cut(s)	83, 95, 378, 667
HpaII	CCGG	3 cut(s)	92, 159, 192
Hpy166II	GTNNAC	1 cut(s)	79
Hpy188I	TCNGA	7 cut(s)	88, 349, 460, 612, 666, 672, 730
Hpy188III	TCNNGA	1 cut(s)	720
Hpy8I	GTNNAC	1 cut(s)	79
Hpy99I	CGWCG	7 cut(s)	18, 80, 83, 128, 365, 368, 425
HpyAV	CCTTC	6 cut(s)	109, 181, 319, 451, 465, 466
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	2 cut(s)	16, 366
HpyCH4V	TGCA	2 cut(s)	409, 533
HpyF10VI	GCNNNNNNNGC	8 cut(s)	59, 68, 204, 237, 249, 330, 397, 406
HpyF3I	CTNAG	1 cut(s)	611
HpySE526I	ACGT	2 cut(s)	16, 366
Hsp92I	GRCGYC	1 cut(s)	366
Hsp92II	CATG	1 cut(s)	715
HspAI	GCGC	4 cut(s)	148, 196, 250, 394
Kzo9I	GATC	3 cut(s)	276, 607, 708
LmnI	GCTCC	3 cut(s)	311, 350, 430
LpnPI	CCDG	9 cut(s)	105, 172, 205, 206, 245, 287, 501, 528, 588
Lsp1109I	GCAGC	1 cut(s)	77
LweI	GCATC	3 cut(s)	177, 216, 451
MaeI	CTAG	2 cut(s)	204, 638
MaeII	ACGT	2 cut(s)	16, 366
MaeIII	GTNAC	1 cut(s)	436
MalI	GATC	3 cut(s)	278, 609, 710
MbiI	CCGCTC	3 cut(s)	184, 306, 345
MboI	GATC	3 cut(s)	276, 607, 708
MboII	GAAGA	3 cut(s)	205, 304, 535
MfeI	CAATTG	1 cut(s)	404
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	3 cut(s)	419, 454, 699
MlsI	TGGCCA	2 cut(s)	231, 630
MluCI	AATT	3 cut(s)	404, 480, 585
MluNI	TGGCCA	2 cut(s)	231, 630
MlyI	GAGTC	3 cut(s)	89, 387, 661
MmeI	TCCRAC	6 cut(s)	61, 111, 372, 600, 689, 753
Mox20I	TGGCCA	2 cut(s)	231, 630
MscI	TGGCCA	2 cut(s)	231, 630
MseI	TTAA	3 cut(s)	152, 432, 539
Msp20I	TGGCCA	2 cut(s)	231, 630
MspI	CCGG	3 cut(s)	92, 159, 192
MspR9I	CCNGG	3 cut(s)	92, 193, 516
MunI	CAATTG	1 cut(s)	404
Mva1269I	GAATGC	1 cut(s)	362
MvaI	CCWGG	1 cut(s)	516
MvnI	CGCG	4 cut(s)	148, 176, 198, 394
MwoI	GCNNNNNNNGC	8 cut(s)	59, 68, 204, 237, 249, 330, 397, 406
NciI	CCSGG	2 cut(s)	92, 193
NdeII	GATC	3 cut(s)	276, 607, 708
NlaIII	CATG	1 cut(s)	715
NlaIV	GGNNCC	2 cut(s)	452, 453
NmeAIII	GCCGAG	1 cut(s)	279
NmuCI	GTSAC	1 cut(s)	436
NspV	TTCGAA	1 cut(s)	354
PaeR7I	CTCGAG	2 cut(s)	335, 412
PcsI	WCGNNNNNNNCGW	2 cut(s)	84, 360
PctI	GAATGC	1 cut(s)	362
PfeI	GAWTC	1 cut(s)	83
PflFI	GACNNNGTC	1 cut(s)	365
PfoI	TCCNGGA	1 cut(s)	514
PkrI	GCNGC	8 cut(s)	47, 64, 67, 70, 175, 242, 305, 393
PleI	GAGTC	3 cut(s)	89, 386, 661
PpsI	GAGTC	3 cut(s)	89, 386, 661
Psp6I	CCWGG	1 cut(s)	514
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	1 cut(s)	514
PspN4I	GGNNCC	2 cut(s)	452, 453
PspOMI	GGGCCC	1 cut(s)	450
PspPI	GGNCC	3 cut(s)	340, 450, 451
PspXI	VCTCGAGB	2 cut(s)	335, 412
PsuI	RGATCY	1 cut(s)	276
PsyI	GACNNNGTC	1 cut(s)	365
RsaI	GTAC	1 cut(s)	236
RsaNI	GTAC	1 cut(s)	235
SalI	GTCGAC	1 cut(s)	77
SaqAI	TTAA	3 cut(s)	152, 432, 539
SatI	GCNGC	8 cut(s)	46, 63, 66, 69, 174, 241, 304, 392
Sau3AI	GATC	3 cut(s)	276, 607, 708
Sau96I	GGNCC	3 cut(s)	340, 450, 451
SchI	GAGTC	3 cut(s)	89, 387, 661
ScrFI	CCNGG	3 cut(s)	92, 193, 516
SduI	GDGCHC	3 cut(s)	419, 454, 699
SfaNI	GCATC	3 cut(s)	177, 216, 451
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	2 cut(s)	335, 412
SfuI	TTCGAA	1 cut(s)	354
SgrDI	CGTCGACG	1 cut(s)	77
SinI	GGWCC	1 cut(s)	340
SlaI	CTCGAG	2 cut(s)	335, 412
SmiI	ATTTAAAT	1 cut(s)	540
SmlI	CTYRAG	3 cut(s)	335, 412, 653
SmoI	CTYRAG	3 cut(s)	335, 412, 653
Sse9I	AATT	3 cut(s)	404, 480, 585
SspMI	CTAG	2 cut(s)	204, 638
StyD4I	CCNGG	3 cut(s)	90, 191, 514
SwaI	ATTTAAAT	1 cut(s)	540
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	2 cut(s)	19, 369
TaqI	TCGA	6 cut(s)	78, 216, 336, 354, 413, 477
TasI	AATT	3 cut(s)	404, 480, 585
TauI	GCSGC	7 cut(s)	48, 65, 71, 176, 243, 306, 394
TfiI	GAWTC	1 cut(s)	83
Tru1I	TTAA	3 cut(s)	152, 432, 539
Tru9I	TTAA	3 cut(s)	152, 432, 539
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	1 cut(s)	65
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	433
TspGWI	ACGGA	3 cut(s)	250, 371, 582
Tth111I	GACNNNGTC	1 cut(s)	365
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	480
XhoI	CTCGAG	2 cut(s)	335, 412
XmiI	GTMKAC	1 cut(s)	78
XspI	CTAG	2 cut(s)	204, 638
ZraI	GACGTC	1 cut(s)	367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.