Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008450

Physical Location & Seq

Genomic Coordinates Reverse (-)

46016264 .. 46018870

Gene Structure 2607 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G563200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTTCCTCCTTCACCGGCAGCGCGTCGCCGCCCTCCAGCTCCAAATCCGACGCTACGCCCAATCCGCCACAGCCGCTCTGCTCCCCCCGGACCCGGAACTCGAACCGGACTTCCCGAGACCCGACCCGAAATACGCCGAGACAATCTTCGCCGTTCCACGCCCCGCCTCCGGTAAGAGCATCTCCGCCAAAGAGCGCAAGGCCGGCCGCGTCCCCAGCATTGTCTTCGAGCAAGAGGACGGCCAGCACGGCGGCAACAAGCGCCTCATCTCTATACGGACCAACCAAATCCGAAAACTTGTCGGTCATCTCGGCCGCTCCTTCTTCCTCTCCAGACTCTTCGACCTCGAGGTTCGCTCCGATTTCGACTCTGAAAACGACGACGTCGTTGAGAGGGTCCGCGTTTTGCCTCGCATGATTCATTTGCACTCGGCCACGGACGCACCGCTTAATGTGACCTTCATAAGGGCTCCTTCTCATGCTTTGTTGAAAGTCGATATTCCTCTTGTATTTCGAGGAGATGATGTCTCTCCTGGATTGAAGAAAGGTGCTTATTTAAATACAATCAAGAGGACTGTAAAGTTCCTTTGCCCTGCAGATGTGATTCCTCCATATATTGATGTGGATCTGAGTGAGTTGGATGTCGGCCAAAAGATATTAATGGGAGATCTCAAGGTTCATCCGGCTCTAAAGCTTCTTCAGTCAAAAGATGAGCCTGTTTGTAAGATCATGGGAGCCAGAGTTTCTGAACAAAAGAAATCTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

256

Amino Acids

28.57

Weight (kDa)

9.58

Isoelectric Point (pI)

43.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23620 AT4G23620
fragaria_vesca	FvH4_4g11490
malus_domestica	MD12G1010000.v1.1 MD14G1007200.v1.1
prunus_persica	Prupe.1G080900_v2.0.a1 Prupe.1G080900_v2.0.a1 Prupe.1G563200_v2.0.a1
pyrus_communis	pycom12g00760 pycom14g00570
rosa_chinensis	RchiOBHm_Chr4g0408271 RchiOBHm_Chr4g0408291
rosa_laevigata	RLG00000008657
rosa_multiflora	Rmu_sc0018903.1_g000008
rosa_roxburghii	Rroxscaffold_5G00352790 Rroxscaffold_5G00352830
rosa_rugosa	Rorug04G0085100
rosa_samantha	Rh4AG149600 Rh4AG149800 Rh4CG156800 Rh4CG157100 Rh4DG142600
rosa_wichuraiana	Rw0G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	387
AbsI	CCTCGAGG	1 cut(s)	347
AccBSI	CCGCTC	2 cut(s)	77, 318
AccII	CGCG	3 cut(s)	24, 210, 402
AclWI	GGATC	1 cut(s)	633
AcoI	YGGCCR	5 cut(s)	205, 241, 313, 432, 646
AcuI	CTGAAG	1 cut(s)	683
AcyI	GRCGYC	1 cut(s)	384
AfiI	CCNNNNNNNGG	3 cut(s)	94, 170, 465
AgsI	TTSAA	2 cut(s)	490, 541
AjnI	CCWGG	1 cut(s)	532
AloI	GAACNNNNNNTCC	2 cut(s)	96, 128
AluBI	AGCT	2 cut(s)	40, 694
AluI	AGCT	2 cut(s)	40, 694
Alw26I	GTCTC	3 cut(s)	112, 134, 532
AlwI	GGATC	1 cut(s)	633
Ama87I	CYCGRG	2 cut(s)	115, 347
AoxI	GGCC	6 cut(s)	201, 205, 241, 313, 432, 646
ApeKI	GCWGC	1 cut(s)	19
AseI	ATTAAT	1 cut(s)	659
AspLEI	GCGC	3 cut(s)	24, 198, 264
AspS9I	GGNCC	3 cut(s)	91, 279, 397
AsuC2I	CCSGG	2 cut(s)	89, 95
AsuHPI	GGTGA	1 cut(s)	5
AvaI	CYCGRG	2 cut(s)	115, 347
AvaII	GGWCC	3 cut(s)	91, 279, 397
BanII	GRGCYC	1 cut(s)	472
BbsI	GAAGAC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	31
BceAI	ACGGC	3 cut(s)	137, 256, 265
BcgI	CGANNNNNNTGC	2 cut(s)	208, 242
BciT130I	CCWGG	1 cut(s)	534
BcnI	CCSGG	2 cut(s)	89, 95
BcoDI	GTCTC	3 cut(s)	112, 134, 532
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	265
BglI	GCCNNNNNGGC	1 cut(s)	249
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	6 cut(s)	20, 30, 75, 208, 253, 316
BlsI	GCNGC	6 cut(s)	21, 31, 76, 209, 254, 317
Bme1390I	CCNGG	3 cut(s)	89, 95, 534
Bme18I	GGWCC	3 cut(s)	91, 279, 397
BmeT110I	CYCGRG	2 cut(s)	115, 347
BmgT120I	GGNCC	3 cut(s)	91, 279, 397
BmiI	GGNNCC	4 cut(s)	93, 398, 471, 736
BmrFI	CCNGG	3 cut(s)	89, 95, 534
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	217
BplI	GAGNNNNNCTC	2 cut(s)	341, 373
BpmI	CTGGAG	2 cut(s)	20, 316
BpuEI	CTTGAG	1 cut(s)	656
BpuMI	CCSGG	2 cut(s)	89, 95
BsaBI	GATNNNNATC	1 cut(s)	624
BsaHI	GRCGYC	1 cut(s)	384
BsaI	GGTCTC	1 cut(s)	112
BsaJI	CCNNGG	2 cut(s)	87, 435
BsaWI	WCCGGW	2 cut(s)	106, 170
BsaXI	ACNNNNNCTCC	4 cut(s)	510, 540, 726, 756
Bsc4I	CCNNNNNNNGG	3 cut(s)	94, 170, 465
Bse118I	RCCGGY	2 cut(s)	15, 203
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	2 cut(s)	87, 435
BseGI	GGATG	2 cut(s)	646, 679
BseJI	GATNNNNATC	1 cut(s)	624
BseLI	CCNNNNNNNGG	3 cut(s)	94, 170, 465
BseMII	CTCAG	1 cut(s)	620
BseRI	GAGGAG	1 cut(s)	531
BseX3I	CGGCCG	2 cut(s)	205, 313
BseXI	GCAGC	1 cut(s)	31
BseYI	CCCAGC	1 cut(s)	215
Bsh1236I	CGCG	3 cut(s)	24, 210, 402
Bsh1285I	CGRYCG	2 cut(s)	208, 316
BshFI	GGCC	6 cut(s)	203, 207, 243, 315, 434, 648
BsiEI	CGRYCG	2 cut(s)	208, 316
BsiHKCI	CYCGRG	2 cut(s)	115, 347
BsiSI	CCGG	7 cut(s)	16, 89, 95, 107, 171, 204, 683
BslFI	GGGAC	1 cut(s)	197
BslI	CCNNNNNNNGG	3 cut(s)	94, 170, 465
BsmAI	GTCTC	3 cut(s)	112, 134, 532
BsmFI	GGGAC	1 cut(s)	197
BsnI	GGCC	6 cut(s)	203, 207, 243, 315, 434, 648
Bso31I	GGTCTC	1 cut(s)	112
BsoBI	CYCGRG	2 cut(s)	115, 347
Bsp1286I	GDGCHC	1 cut(s)	472
Bsp143I	GATC	3 cut(s)	625, 667, 726
BspANI	GGCC	6 cut(s)	203, 207, 243, 315, 434, 648
BspCNI	CTCAG	1 cut(s)	621
BspFNI	CGCG	3 cut(s)	24, 210, 402
BspLI	GGNNCC	4 cut(s)	93, 398, 471, 736
BspMAI	CTGCAG	1 cut(s)	598
BspPI	GGATC	1 cut(s)	633
BspTNI	GGTCTC	1 cut(s)	112
BsrBI	CCGCTC	2 cut(s)	77, 318
BsrFI	RCCGGY	2 cut(s)	15, 203
BssAI	RCCGGY	2 cut(s)	15, 203
BssECI	CCNNGG	2 cut(s)	87, 435
BssMI	GATC	3 cut(s)	625, 667, 726
BssNI	GRCGYC	1 cut(s)	384
Bst2UI	CCWGG	1 cut(s)	534
Bst4CI	ACNGT	1 cut(s)	577
Bst6I	CTCTTC	1 cut(s)	344
BstACI	GRCGYC	1 cut(s)	384
BstC8I	GCNNGC	2 cut(s)	205, 245
BstDEI	CTNAG	1 cut(s)	629
BstDSI	CCRYGG	1 cut(s)	435
BstENI	CCTNNNNNAGG	1 cut(s)	463
BstF5I	GGATG	2 cut(s)	646, 679
BstFNI	CGCG	3 cut(s)	24, 210, 402
BstH2I	RGCGCY	1 cut(s)	265
BstHHI	GCGC	3 cut(s)	24, 198, 264
BstKTI	GATC	3 cut(s)	628, 670, 729
BstMAI	GTCTC	3 cut(s)	112, 134, 532
BstMBI	GATC	3 cut(s)	625, 667, 726
BstMCI	CGRYCG	2 cut(s)	208, 316
BstMWI	GCNNNNNNNGC	7 cut(s)	65, 74, 204, 216, 249, 261, 440
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	3 cut(s)	87, 93, 532
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	3 cut(s)	24, 210, 402
BstV1I	GCAGC	1 cut(s)	31
BstV2I	GAAGAC	1 cut(s)	217
BstX2I	RGATCY	2 cut(s)	625, 667
BstYI	RGATCY	2 cut(s)	625, 667
BstZI	CGGCCG	2 cut(s)	205, 313
BsuRI	GGCC	6 cut(s)	203, 207, 243, 315, 434, 648
BtgI	CCRYGG	1 cut(s)	435
BtsCI	GGATG	2 cut(s)	646, 679
Cac8I	GCNNGC	2 cut(s)	205, 245
CfoI	GCGC	3 cut(s)	24, 198, 264
Cfr10I	RCCGGY	2 cut(s)	15, 203
Cfr13I	GGNCC	3 cut(s)	91, 279, 397
CseI	GACGC	4 cut(s)	13, 60, 199, 449
CviAII	CATG	3 cut(s)	415, 479, 730
DdeI	CTNAG	1 cut(s)	629
DpnI	GATC	3 cut(s)	627, 669, 728
DpnII	GATC	3 cut(s)	625, 667, 726
DraI	TTTAAA	1 cut(s)	558
EaeI	YGGCCR	5 cut(s)	205, 241, 313, 432, 646
EagI	CGGCCG	2 cut(s)	205, 313
Eam1104I	CTCTTC	1 cut(s)	344
EarI	CTCTTC	1 cut(s)	344
EciI	GGCGGA	2 cut(s)	55, 175
EclXI	CGGCCG	2 cut(s)	205, 313
Eco24I	GRGCYC	1 cut(s)	472
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	3 cut(s)	91, 279, 397
Eco52I	CGGCCG	2 cut(s)	205, 313
Eco57I	CTGAAG	1 cut(s)	683
Eco88I	CYCGRG	2 cut(s)	115, 347
EcoNI	CCTNNNNNAGG	1 cut(s)	463
EcoRII	CCWGG	1 cut(s)	532
EcoT38I	GRGCYC	1 cut(s)	472
FaeI	CATG	3 cut(s)	418, 482, 733
FaiI	YATR	7 cut(s)	275, 416, 464, 480, 613, 615, 731
FalI	AAGNNNNNCTT	2 cut(s)	457, 489
FaqI	GGGAC	1 cut(s)	197
FatI	CATG	3 cut(s)	414, 478, 729
FauI	CCCGC	1 cut(s)	172
Fnu4HI	GCNGC	6 cut(s)	20, 30, 75, 208, 253, 316
FokI	GGATG	2 cut(s)	653, 666
FriOI	GRGCYC	1 cut(s)	472
FseI	GGCCGGCC	1 cut(s)	207
Fsp4HI	GCNGC	6 cut(s)	20, 30, 75, 208, 253, 316
GlaI	GCGC	3 cut(s)	23, 197, 263
GluI	GCNGC	6 cut(s)	20, 30, 75, 208, 253, 316
GsaI	CCCAGC	1 cut(s)	219
GsuI	CTGGAG	2 cut(s)	20, 316
HaeII	RGCGCY	1 cut(s)	265
HaeIII	GGCC	6 cut(s)	203, 207, 243, 315, 434, 648
HapII	CCGG	7 cut(s)	16, 89, 95, 107, 171, 204, 683
HgaI	GACGC	4 cut(s)	13, 60, 199, 449
HhaI	GCGC	3 cut(s)	24, 198, 264
Hin1I	GRCGYC	1 cut(s)	384
Hin1II	CATG	3 cut(s)	418, 482, 733
Hin6I	GCGC	3 cut(s)	22, 196, 262
HinP1I	GCGC	3 cut(s)	22, 196, 262
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	4 cut(s)	336, 368, 418, 604
HpaII	CCGG	7 cut(s)	16, 89, 95, 107, 171, 204, 683
HphI	GGTGA	1 cut(s)	5
Hpy188I	TCNGA	6 cut(s)	50, 293, 361, 373, 630, 748
Hpy188III	TCNNGA	3 cut(s)	115, 333, 568
Hpy99I	CGWCG	5 cut(s)	29, 54, 383, 386, 389
HpyAV	CCTTC	4 cut(s)	20, 331, 469, 483
HpyCH4III	ACNGT	1 cut(s)	577
HpyCH4IV	ACGT	1 cut(s)	384
HpyCH4V	TGCA	2 cut(s)	427, 596
HpyF10VI	GCNNNNNNNGC	7 cut(s)	65, 74, 204, 216, 249, 261, 440
HpyF3I	CTNAG	1 cut(s)	629
HpySE526I	ACGT	1 cut(s)	384
Hsp92I	GRCGYC	1 cut(s)	384
Hsp92II	CATG	3 cut(s)	418, 482, 733
HspAI	GCGC	3 cut(s)	22, 196, 262
KroI	GCCGGC	1 cut(s)	203
KroNI	GCCGGC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	625, 667, 726
LmnI	GCTCC	6 cut(s)	45, 87, 323, 362, 475, 734
Lsp1109I	GCAGC	1 cut(s)	31
LweI	GCATC	1 cut(s)	189
MaeII	ACGT	1 cut(s)	384
MaeIII	GTNAC	1 cut(s)	454
MalI	GATC	3 cut(s)	627, 669, 728
MbiI	CCGCTC	2 cut(s)	77, 318
MboI	GATC	3 cut(s)	625, 667, 726
MboII	GAAGA	6 cut(s)	139, 217, 316, 331, 553, 689
MflI	RGATCY	2 cut(s)	625, 667
MhlI	GDGCHC	1 cut(s)	472
MlyI	GAGTC	2 cut(s)	330, 362
MmeI	TCCRAC	2 cut(s)	73, 618
MroNI	GCCGGC	1 cut(s)	203
MseI	TTAA	3 cut(s)	450, 557, 659
MspI	CCGG	7 cut(s)	16, 89, 95, 107, 171, 204, 683
MspR9I	CCNGG	3 cut(s)	89, 95, 534
MvaI	CCWGG	1 cut(s)	534
MvnI	CGCG	3 cut(s)	24, 210, 402
MwoI	GCNNNNNNNGC	7 cut(s)	65, 74, 204, 216, 249, 261, 440
NaeI	GCCGGC	1 cut(s)	205
NciI	CCSGG	2 cut(s)	89, 95
NdeII	GATC	3 cut(s)	625, 667, 726
NgoMIV	GCCGGC	1 cut(s)	203
NlaIII	CATG	3 cut(s)	418, 482, 733
NlaIV	GGNNCC	4 cut(s)	93, 398, 471, 736
NmeAIII	GCCGAG	3 cut(s)	163, 291, 410
NmuCI	GTSAC	1 cut(s)	454
PaeR7I	CTCGAG	1 cut(s)	347
PcsI	WCGNNNNNNNCGW	1 cut(s)	384
PdiI	GCCGGC	1 cut(s)	205
PfeI	GAWTC	2 cut(s)	418, 604
PflFI	GACNNNGTC	1 cut(s)	383
PfoI	TCCNGGA	1 cut(s)	532
PkrI	GCNGC	6 cut(s)	21, 31, 76, 209, 254, 317
PleI	GAGTC	2 cut(s)	330, 362
PpsI	GAGTC	2 cut(s)	330, 362
PshBI	ATTAAT	1 cut(s)	659
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	1 cut(s)	215
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	4 cut(s)	93, 398, 471, 736
PspPI	GGNCC	3 cut(s)	91, 279, 397
PspXI	VCTCGAGB	1 cut(s)	347
PstI	CTGCAG	1 cut(s)	598
PsuI	RGATCY	2 cut(s)	625, 667
PsyI	GACNNNGTC	1 cut(s)	383
RigI	GGCCGGCC	1 cut(s)	207
SaqAI	TTAA	3 cut(s)	450, 557, 659
SatI	GCNGC	6 cut(s)	20, 30, 75, 208, 253, 316
Sau3AI	GATC	3 cut(s)	625, 667, 726
Sau96I	GGNCC	3 cut(s)	91, 279, 397
SchI	GAGTC	2 cut(s)	330, 362
ScrFI	CCNGG	3 cut(s)	89, 95, 534
SduI	GDGCHC	1 cut(s)	472
SetI	ASST	8 cut(s)	42, 348, 354, 387, 461, 550, 678, 696
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	1 cut(s)	594
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	3 cut(s)	91, 279, 397
SlaI	CTCGAG	1 cut(s)	347
SmiI	ATTTAAAT	1 cut(s)	558
SmlI	CTYRAG	2 cut(s)	347, 671
SmoI	CTYRAG	2 cut(s)	347, 671
StyD4I	CCNGG	3 cut(s)	87, 93, 532
SwaI	ATTTAAAT	1 cut(s)	558
TaaI	ACNGT	1 cut(s)	577
TaiI	ACGT	1 cut(s)	387
TaqI	TCGA	7 cut(s)	102, 228, 342, 348, 366, 495, 514
TaqII	GACCGA	1 cut(s)	293
TauI	GCSGC	5 cut(s)	32, 77, 210, 255, 318
TfiI	GAWTC	2 cut(s)	418, 604
Tru1I	TTAA	3 cut(s)	450, 557, 659
Tru9I	TTAA	3 cut(s)	450, 557, 659
TseFI	GTSAC	1 cut(s)	454
TseI	GCWGC	1 cut(s)	19
Tsp45I	GTSAC	1 cut(s)	454
TspDTI	ATGAA	3 cut(s)	410, 451, 668
TspGWI	ACGGA	2 cut(s)	292, 452
Tth111I	GACNNNGTC	1 cut(s)	383
VpaK11BI	GGWCC	3 cut(s)	91, 279, 397
VspI	ATTAAT	1 cut(s)	659
XagI	CCTNNNNNAGG	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	347
ZraI	GACGTC	1 cut(s)	385

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.