Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008450

Physical Location & Seq

Genomic Coordinates Reverse (-)

5925691 .. 5928468

Gene Structure 2778 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G080900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 783 bp

ATGTTCCTCCACAGGCAGCGCCCCGCCGCACTAACCGAAGCCCTCCAGCTCCAAATCCGGCGCTACGCCCAATCCGCCACAGCCTATCTGCTCCACCAGGAACCGGAAGTGGAACCCGACTTTCAGTCCACCTTCCCGAGACCCGACCCGAAATACGCCGAGACCATCTTCGCAGTCCCACGCACCGCCTCCGGTAAGAGCATCTCCGCTAACGAGCGCAAGGCGGGCCGCGTCCCTAGCATCGTCTTCGAGCAAGAGGACGGCCAGCACGGCGGCAACAAGCGCCTCATCTCTGTACGGACCAACCAGATCCGAAAACTCGTCGGTCATCTCGGCCGCTCTTTCTTCCTCTCCAGGCTCTTTGACCTCGAGGTTCGCTCCGACTTCGACTCTGAAGACATCGTTGAGAGGGTCCGCGTTTTGCCTCGCATGATTCATTTGCACTCGGCCACGGACGCACCGCTTAATGTGACCTTCATAAGGGCTCCTTCTCATGCTTTGTTGAAAGTCGACATTCCTCTTGTGTTTCGAGGAGATGATGTCTCTCCTGGATTGAAGAAAGGTGCTTACTTAAATACAATCAAGAGGACTGTAAAGTTTCTCTGCCCTGCAGATGTGATTCCTCCATATATTGATGTGGATCTGAGTGAGTTGGATGTCGGCCAAAAGATATTAATGGGAGATCTCAAGGTTCATCCGACTCTAAAGCTTATTCAGTCAAAAGATGAGCCTGTTTGTAAGATCATGGGAGCTAGAGTTTCTGAACAAAAGAAAACTAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L25p Ribosomal_TL5_C

Protein Analysis

261

Amino Acids

29.3

Weight (kDa)

9.49

Isoelectric Point (pI)

44.25

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008450)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23620 AT4G23620
fragaria_vesca	FvH4_4g11490
malus_domestica	MD12G1010000.v1.1 MD14G1007200.v1.1
prunus_persica	Prupe.1G080900_v2.0.a1 Prupe.1G080900_v2.0.a1 Prupe.1G563200_v2.0.a1
pyrus_communis	pycom12g00760 pycom14g00570
rosa_chinensis	RchiOBHm_Chr4g0408271 RchiOBHm_Chr4g0408291
rosa_laevigata	RLG00000008657
rosa_multiflora	Rmu_sc0018903.1_g000008
rosa_roxburghii	Rroxscaffold_5G00352790 Rroxscaffold_5G00352830
rosa_rugosa	Rorug04G0085100
rosa_samantha	Rh4AG149600 Rh4AG149800 Rh4CG156800 Rh4CG157100 Rh4DG142600
rosa_wichuraiana	Rw0G000420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	368
AccBSI	CCGCTC	1 cut(s)	339
AccI	GTMKAC	1 cut(s)	510
AccII	CGCG	2 cut(s)	231, 417
AclWI	GGATC	2 cut(s)	304, 648
AcoI	YGGCCR	4 cut(s)	262, 334, 447, 661
AcuI	CTGAAG	1 cut(s)	414
AfaI	GTAC	1 cut(s)	297
AfiI	CCNNNNNNNGG	2 cut(s)	103, 480
AgsI	TTSAA	2 cut(s)	505, 556
AhdI	GACNNNNNGTC	1 cut(s)	124
AjnI	CCWGG	3 cut(s)	96, 353, 547
AluBI	AGCT	3 cut(s)	49, 709, 752
AluI	AGCT	3 cut(s)	49, 709, 752
Alw26I	GTCTC	3 cut(s)	133, 155, 547
AlwI	GGATC	2 cut(s)	304, 648
Ama87I	CYCGRG	2 cut(s)	136, 368
AoxI	GGCC	5 cut(s)	226, 262, 334, 447, 661
ApeKI	GCWGC	1 cut(s)	16
AseI	ATTAAT	1 cut(s)	674
AspLEI	GCGC	4 cut(s)	21, 63, 219, 285
AspS9I	GGNCC	3 cut(s)	226, 300, 412
AvaI	CYCGRG	2 cut(s)	136, 368
AvaII	GGWCC	2 cut(s)	300, 412
BanII	GRGCYC	1 cut(s)	487
BbsI	GAAGAC	2 cut(s)	238, 402
BbvI	GCAGC	1 cut(s)	28
BccI	CCATC	1 cut(s)	173
BceAI	ACGGC	2 cut(s)	277, 286
BcgI	CGANNNNNNTGC	2 cut(s)	229, 263
BciT130I	CCWGG	3 cut(s)	98, 355, 549
BcoDI	GTCTC	3 cut(s)	133, 155, 547
BfaI	CTAG	2 cut(s)	237, 753
BfmI	CTRYAG	1 cut(s)	609
BfoI	RGCGCY	3 cut(s)	22, 64, 286
BglI	GCCNNNNNGGC	1 cut(s)	270
BglII	AGATCT	1 cut(s)	682
BisI	GCNGC	5 cut(s)	17, 27, 229, 274, 337
BlsI	GCNGC	5 cut(s)	18, 28, 230, 275, 338
Bme1390I	CCNGG	3 cut(s)	98, 355, 549
Bme18I	GGWCC	2 cut(s)	300, 412
BmeRI	GACNNNNNGTC	1 cut(s)	124
BmeT110I	CYCGRG	2 cut(s)	136, 368
BmgT120I	GGNCC	3 cut(s)	226, 300, 412
BmiI	GGNNCC	4 cut(s)	102, 114, 413, 486
BmrFI	CCNGG	3 cut(s)	98, 355, 549
BmsI	GCATC	2 cut(s)	210, 249
BpiI	GAAGAC	2 cut(s)	238, 402
BplI	GAGNNNNNCTC	2 cut(s)	362, 394
BpmI	CTGGAG	2 cut(s)	29, 337
BpuEI	CTTGAG	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	639
BsaI	GGTCTC	2 cut(s)	133, 155
BsaJI	CCNNGG	1 cut(s)	450
BsaWI	WCCGGW	2 cut(s)	103, 191
BsaXI	ACNNNNNCTCC	4 cut(s)	525, 555, 741, 771
Bsc4I	CCNNNNNNNGG	2 cut(s)	103, 480
Bse8I	GATNNNNATC	1 cut(s)	639
BseBI	CCWGG	3 cut(s)	98, 355, 549
BseDI	CCNNGG	1 cut(s)	450
BseGI	GGATG	2 cut(s)	661, 694
BseJI	GATNNNNATC	1 cut(s)	639
BseLI	CCNNNNNNNGG	2 cut(s)	103, 480
BseMII	CTCAG	1 cut(s)	635
BseRI	GAGGAG	1 cut(s)	546
BseX3I	CGGCCG	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	28
Bsh1236I	CGCG	2 cut(s)	231, 417
Bsh1285I	CGRYCG	1 cut(s)	337
BshFI	GGCC	5 cut(s)	228, 264, 336, 449, 663
BsiEI	CGRYCG	1 cut(s)	337
BsiHKCI	CYCGRG	2 cut(s)	136, 368
BsiSI	CCGG	3 cut(s)	58, 104, 192
BslFI	GGGAC	2 cut(s)	161, 218
BslI	CCNNNNNNNGG	2 cut(s)	103, 480
BsmAI	GTCTC	3 cut(s)	133, 155, 547
BsmFI	GGGAC	2 cut(s)	161, 218
BsnI	GGCC	5 cut(s)	228, 264, 336, 449, 663
Bso31I	GGTCTC	2 cut(s)	133, 155
BsoBI	CYCGRG	2 cut(s)	136, 368
Bsp1286I	GDGCHC	1 cut(s)	487
Bsp143I	GATC	4 cut(s)	309, 640, 682, 741
BspANI	GGCC	5 cut(s)	228, 264, 336, 449, 663
BspCNI	CTCAG	1 cut(s)	636
BspFNI	CGCG	2 cut(s)	231, 417
BspLI	GGNNCC	4 cut(s)	102, 114, 413, 486
BspMAI	CTGCAG	1 cut(s)	613
BspPI	GGATC	2 cut(s)	304, 648
BspTNI	GGTCTC	2 cut(s)	133, 155
BsrBI	CCGCTC	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	450
BssMI	GATC	4 cut(s)	309, 640, 682, 741
Bst2UI	CCWGG	3 cut(s)	98, 355, 549
Bst4CI	ACNGT	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	226, 266
BstDEI	CTNAG	1 cut(s)	644
BstDSI	CCRYGG	1 cut(s)	450
BstENI	CCTNNNNNAGG	1 cut(s)	478
BstF5I	GGATG	2 cut(s)	661, 694
BstFNI	CGCG	2 cut(s)	231, 417
BstH2I	RGCGCY	3 cut(s)	22, 64, 286
BstHHI	GCGC	4 cut(s)	21, 63, 219, 285
BstKTI	GATC	4 cut(s)	312, 643, 685, 744
BstMAI	GTCTC	3 cut(s)	133, 155, 547
BstMBI	GATC	4 cut(s)	309, 640, 682, 741
BstMCI	CGRYCG	1 cut(s)	337
BstMWI	GCNNNNNNNGC	6 cut(s)	74, 225, 237, 270, 282, 455
BstNI	CCWGG	3 cut(s)	98, 355, 549
BstSCI	CCNGG	3 cut(s)	96, 353, 547
BstSFI	CTRYAG	1 cut(s)	609
BstUI	CGCG	2 cut(s)	231, 417
BstV1I	GCAGC	1 cut(s)	28
BstV2I	GAAGAC	2 cut(s)	238, 402
BstX2I	RGATCY	3 cut(s)	309, 640, 682
BstYI	RGATCY	3 cut(s)	309, 640, 682
BstZI	CGGCCG	1 cut(s)	334
BsuRI	GGCC	5 cut(s)	228, 264, 336, 449, 663
BtgI	CCRYGG	1 cut(s)	450
BtsCI	GGATG	2 cut(s)	661, 694
Cac8I	GCNNGC	2 cut(s)	226, 266
CfoI	GCGC	4 cut(s)	21, 63, 219, 285
Cfr13I	GGNCC	3 cut(s)	226, 300, 412
CseI	GACGC	2 cut(s)	220, 464
Csp6I	GTAC	1 cut(s)	296
CviAII	CATG	3 cut(s)	430, 494, 745
CviQI	GTAC	1 cut(s)	296
DdeI	CTNAG	1 cut(s)	644
DpnI	GATC	4 cut(s)	311, 642, 684, 743
DpnII	GATC	4 cut(s)	309, 640, 682, 741
DriI	GACNNNNNGTC	1 cut(s)	124
EaeI	YGGCCR	4 cut(s)	262, 334, 447, 661
EagI	CGGCCG	1 cut(s)	334
Eam1105I	GACNNNNNGTC	1 cut(s)	124
EciI	GGCGGA	1 cut(s)	64
EclXI	CGGCCG	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	487
Eco31I	GGTCTC	2 cut(s)	133, 155
Eco47I	GGWCC	2 cut(s)	300, 412
Eco52I	CGGCCG	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	414
Eco88I	CYCGRG	2 cut(s)	136, 368
EcoNI	CCTNNNNNAGG	1 cut(s)	478
EcoRII	CCWGG	3 cut(s)	96, 353, 547
EcoT38I	GRGCYC	1 cut(s)	487
FaeI	CATG	3 cut(s)	433, 497, 748
FaiI	YATR	6 cut(s)	431, 479, 495, 628, 630, 746
FalI	AAGNNNNNCTT	2 cut(s)	472, 504
FaqI	GGGAC	2 cut(s)	161, 218
FatI	CATG	3 cut(s)	429, 493, 744
FauI	CCCGC	2 cut(s)	31, 217
FblI	GTMKAC	1 cut(s)	510
Fnu4HI	GCNGC	5 cut(s)	17, 27, 229, 274, 337
FokI	GGATG	2 cut(s)	668, 681
FriOI	GRGCYC	1 cut(s)	487
Fsp4HI	GCNGC	5 cut(s)	17, 27, 229, 274, 337
FspBI	CTAG	2 cut(s)	237, 753
GlaI	GCGC	4 cut(s)	20, 62, 218, 284
GluI	GCNGC	5 cut(s)	17, 27, 229, 274, 337
GsuI	CTGGAG	2 cut(s)	29, 337
HaeII	RGCGCY	3 cut(s)	22, 64, 286
HaeIII	GGCC	5 cut(s)	228, 264, 336, 449, 663
HapII	CCGG	3 cut(s)	58, 104, 192
HgaI	GACGC	2 cut(s)	220, 464
HhaI	GCGC	4 cut(s)	21, 63, 219, 285
Hin1II	CATG	3 cut(s)	433, 497, 748
Hin6I	GCGC	4 cut(s)	19, 61, 217, 283
HinP1I	GCGC	4 cut(s)	19, 61, 217, 283
HincII	GTYRAC	1 cut(s)	511
HindII	GTYRAC	1 cut(s)	511
HindIII	AAGCTT	1 cut(s)	707
HinfI	GANTC	4 cut(s)	389, 433, 619, 700
HpaII	CCGG	3 cut(s)	58, 104, 192
Hpy166II	GTNNAC	2 cut(s)	129, 511
Hpy188I	TCNGA	6 cut(s)	314, 382, 394, 645, 699, 763
Hpy188III	TCNNGA	2 cut(s)	136, 583
Hpy8I	GTNNAC	2 cut(s)	129, 511
Hpy99I	CGWCG	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	142, 484, 498
HpyCH4III	ACNGT	1 cut(s)	592
HpyCH4V	TGCA	2 cut(s)	442, 611
HpyF10VI	GCNNNNNNNGC	6 cut(s)	74, 225, 237, 270, 282, 455
HpyF3I	CTNAG	1 cut(s)	644
Hsp92II	CATG	3 cut(s)	433, 497, 748
HspAI	GCGC	4 cut(s)	19, 61, 217, 283
Kzo9I	GATC	4 cut(s)	309, 640, 682, 741
LmnI	GCTCC	5 cut(s)	54, 96, 383, 490, 749
Lsp1109I	GCAGC	1 cut(s)	28
LweI	GCATC	2 cut(s)	210, 249
MaeI	CTAG	2 cut(s)	237, 753
MaeIII	GTNAC	1 cut(s)	469
MalI	GATC	4 cut(s)	311, 642, 684, 743
MbiI	CCGCTC	1 cut(s)	339
MboI	GATC	4 cut(s)	309, 640, 682, 741
MboII	GAAGA	5 cut(s)	160, 238, 337, 407, 568
MflI	RGATCY	3 cut(s)	309, 640, 682
MhlI	GDGCHC	1 cut(s)	487
MlyI	GAGTC	2 cut(s)	383, 694
MmeI	TCCRAC	3 cut(s)	405, 633, 722
MseI	TTAA	3 cut(s)	465, 572, 674
MspI	CCGG	3 cut(s)	58, 104, 192
MspR9I	CCNGG	3 cut(s)	98, 355, 549
MvaI	CCWGG	3 cut(s)	98, 355, 549
MvnI	CGCG	2 cut(s)	231, 417
MwoI	GCNNNNNNNGC	6 cut(s)	74, 225, 237, 270, 282, 455
NdeII	GATC	4 cut(s)	309, 640, 682, 741
NlaIII	CATG	3 cut(s)	433, 497, 748
NlaIV	GGNNCC	4 cut(s)	102, 114, 413, 486
NmeAIII	GCCGAG	3 cut(s)	184, 312, 425
NmuCI	GTSAC	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	368
PfeI	GAWTC	2 cut(s)	433, 619
PfoI	TCCNGGA	1 cut(s)	547
PkrI	GCNGC	5 cut(s)	18, 28, 230, 275, 338
PleI	GAGTC	2 cut(s)	383, 694
PpsI	GAGTC	2 cut(s)	383, 694
PshBI	ATTAAT	1 cut(s)	674
Psp6I	CCWGG	3 cut(s)	96, 353, 547
PspGI	CCWGG	3 cut(s)	96, 353, 547
PspN4I	GGNNCC	4 cut(s)	102, 114, 413, 486
PspPI	GGNCC	3 cut(s)	226, 300, 412
PspXI	VCTCGAGB	1 cut(s)	368
PstI	CTGCAG	1 cut(s)	613
PsuI	RGATCY	3 cut(s)	309, 640, 682
RsaI	GTAC	1 cut(s)	297
RsaNI	GTAC	1 cut(s)	296
SalI	GTCGAC	1 cut(s)	509
SaqAI	TTAA	3 cut(s)	465, 572, 674
SatI	GCNGC	5 cut(s)	17, 27, 229, 274, 337
Sau3AI	GATC	4 cut(s)	309, 640, 682, 741
Sau96I	GGNCC	3 cut(s)	226, 300, 412
SchI	GAGTC	2 cut(s)	383, 694
ScrFI	CCNGG	3 cut(s)	98, 355, 549
SduI	GDGCHC	1 cut(s)	487
SetI	ASST	9 cut(s)	51, 134, 369, 375, 476, 565, 693, 711, 754
SfaNI	GCATC	2 cut(s)	210, 249
SfcI	CTRYAG	1 cut(s)	609
Sfr274I	CTCGAG	1 cut(s)	368
SinI	GGWCC	2 cut(s)	300, 412
SlaI	CTCGAG	1 cut(s)	368
SmlI	CTYRAG	2 cut(s)	368, 686
SmoI	CTYRAG	2 cut(s)	368, 686
SspMI	CTAG	2 cut(s)	237, 753
StyD4I	CCNGG	3 cut(s)	96, 353, 547
TaaI	ACNGT	1 cut(s)	592
TaqI	TCGA	5 cut(s)	249, 369, 387, 510, 529
TaqII	GACCGA	1 cut(s)	314
TauI	GCSGC	4 cut(s)	29, 231, 276, 339
TfiI	GAWTC	2 cut(s)	433, 619
Tru1I	TTAA	3 cut(s)	465, 572, 674
Tru9I	TTAA	3 cut(s)	465, 572, 674
TseFI	GTSAC	1 cut(s)	469
TseI	GCWGC	1 cut(s)	16
Tsp45I	GTSAC	1 cut(s)	469
TspDTI	ATGAA	3 cut(s)	425, 466, 683
TspGWI	ACGGA	2 cut(s)	313, 467
VpaK11BI	GGWCC	2 cut(s)	300, 412
VspI	ATTAAT	1 cut(s)	674
XagI	CCTNNNNNAGG	1 cut(s)	478
XhoI	CTCGAG	1 cut(s)	368
XmiI	GTMKAC	1 cut(s)	510
XspI	CTAG	2 cut(s)	237, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.