AT4G23860

E3 ubiquitin-protein ligase UBR7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0006747
Physical Location & Seq
Forward (+)
12408950 .. 12411678
2729 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G23860.2

Sequence Viewer

Length: 1359 bp
ATGGCATCTGGTGTTTTCGAGGATGAAGCTGAAGGAACTATAACGATCAATGAATATATCGAAAGGCTTGACGCAGAAGAGCTGGCAGCGGATTTGGTGTTGGGTGGAGATGAAGGAGATGAGTGTACTTTCCCAAAGGGTTACATGAAAAGGCAAGCAATTTTCTCATGCATTACATGTACACCAGAGGGGAATGCTGGAATTTGCACTGCTTGTTGCTTATCTTGTCATGATGGCCATGAGCTTTTGGAGCTGTGGACTAAGAGAAATTTTCGATGTGATTGCGGGAACTCAAAGTTTGGAACTTTGGCTTGTAAGCTTCTCCCGAGCAAAGATATAGAAAACTCTGAAAATTCTTACAACCATAATTTCAAAGGCTTGTACTGCACTTGCGACCGACCTTACCCTGACCCAAATGTGGAAGAACAAGTAGAGATGATTCAGTGTTGTCTCTGTGAGGATTGGTTTCATGAGGAGCATCTCGGTCTCACACCTTCAGACAGTGTTGGTAGCCAGATTCCAAGGGATGAGGAAAGTGAGCCGATCTATGAAGATTTCATTTGTCAAAACTGCTCCCCAGCATGTTCGTTTCTGACACTTTATCCTGAGAACTTGTGGGTTGTTGCTAAAGTAGATTCCACTGGTTCTGCTAATGCTTGTTCAGAGACAATTGAGTTAGACAAAAACCACATGGATTCTGAACCCGGCCAGCCAGAGAACGGTACTGATGCTGAGAAATCTGTTGTAGGAAAATGTTCTGAGACGATCAGTGACTCAGAACCTGGCCAGCCTGAGAACGGCACTGAAGCCGAGAAATCTGTTGTGCAAAAATGTTCTGAGAAGATCGATGAATCTGAAGCCGGCCAGCCTGAGAACAGTACTGAAGCCGAGAAATTCGTTGTGCGGAAATGTTCTGAGAAGATCGATGGCTCTGAAAATGTTCCTGCAGCTGGTTGTGTTATTAGGACTGATCTAAACTCGTGTCCTGAGTTTGAGAAGAAACCTTTGTTTTTGACCAAAAACTGGAGGAACATCCTATGCAGATGCGAAAAGTGCCTTGAGATGTATAAGCAGAGAAAGGTAAGCTATCTACTTGATGCAGAGGACACAATTGTTGAATACGAGAAGAAGGCGAAGGAAAAAAGAACAGAGAAACTGGAGAAACAAGAAGGTGAAGCACTTGATCTTCTGAATAATCTAGACCACGTATCCAAAGTTGAGCTCCTTCACGGAATCAAAGACTTCCAAGACGGACTCCAGGGTTTAATGGAGTCTGCTGGGCCATCAAAGGCGATAACTTCTGCAGATATCGAGCAAATGTTTTCAAAACTGAAAAACAAACGTAAAAGGATGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
zf-UBR

Protein Analysis

452

Amino Acids

50.49

Weight (kDa)

4.62

Isoelectric Point (pI)

53.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-UBR PF02207 49 - 100 5.5e-12 Putative zinc finger in N-recognin (UBR box)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 1023
AciI CCGC 3 cut(s) 89, 285, 904
AcoI YGGCCR 4 cut(s) 235, 706, 784, 862
AcsI RAATTY 4 cut(s) 201, 268, 352, 893
AcuI CTGAAG 5 cut(s) 51, 480, 825, 876, 903
AfaI GTAC 5 cut(s) 127, 181, 383, 724, 880
AfiI CCNNNNNNNGG 5 cut(s) 418, 719, 797, 950, 1023
AflIII ACRYGT 1 cut(s) 176
AgsI TTSAA 3 cut(s) 373, 1118, 1326
AjnI CCWGG 2 cut(s) 781, 1257
AluBI AGCT 8 cut(s) 29, 82, 244, 253, 319, 950, 1086, 1222
AluI AGCT 8 cut(s) 29, 82, 244, 253, 319, 950, 1086, 1222
Alw21I GWGCWC 1 cut(s) 1224
Alw26I GTCTC 4 cut(s) 455, 491, 659, 755
AlwNI CAGNNNCTG 1 cut(s) 782
Ama87I CYCGRG 1 cut(s) 325
AoxI GGCC 5 cut(s) 235, 706, 784, 862, 1280
ApeKI GCWGC 2 cut(s) 86, 947
ApoI RAATTY 4 cut(s) 201, 268, 352, 893
Asp700I GAANNNNTTC 2 cut(s) 754, 939
AspS9I GGNCC 1 cut(s) 1280
AsuC2I CCSGG 1 cut(s) 705
AsuHPI GGTGA 1 cut(s) 1184
AvaI CYCGRG 1 cut(s) 325
BalI TGGCCA 2 cut(s) 237, 786
BanII GRGCYC 1 cut(s) 1224
BauI CACGAG 1 cut(s) 979
Bbv12I GWGCWC 1 cut(s) 1224
BbvI GCAGC 2 cut(s) 98, 959
BccI CCATC 4 cut(s) 227, 920, 1291, 1345
BceAI ACGGC 1 cut(s) 814
BcgI CGANNNNNNTGC 2 cut(s) 264, 298
BciT130I CCWGG 2 cut(s) 783, 1259
BciVI GTATCC 1 cut(s) 1219
BcnI CCSGG 1 cut(s) 705
BcoDI GTCTC 4 cut(s) 455, 491, 659, 755
BfaI CTAG 1 cut(s) 1199
BfmI CTRYAG 2 cut(s) 945, 1302
BfuI GTATCC 1 cut(s) 1219
BisI GCNGC 2 cut(s) 87, 948
BlsI GCNGC 2 cut(s) 88, 949
BmcAI AGTACT 1 cut(s) 880
Bme1390I CCNGG 3 cut(s) 705, 783, 1259
BmeT110I CYCGRG 1 cut(s) 325
BmgT120I GGNCC 1 cut(s) 1280
BmrFI CCNGG 3 cut(s) 705, 783, 1259
BmsI GCATC 5 cut(s) 14, 487, 718, 1034, 1087
BpmI CTGGAG 3 cut(s) 1045, 1178, 1241
BpuEI CTTGAG 1 cut(s) 1079
BpuMI CCSGG 1 cut(s) 705
Bsa29I ATCGAT 2 cut(s) 846, 924
BsaAI YACGTR 1 cut(s) 1207
BsaI GGTCTC 1 cut(s) 491
BsaJI CCNNGG 2 cut(s) 521, 1258
Bsc4I CCNNNNNNNGG 5 cut(s) 418, 719, 797, 950, 1023
Bse118I RCCGGY 1 cut(s) 860
Bse1I ACTGG 3 cut(s) 646, 1028, 1161
BseBI CCWGG 2 cut(s) 783, 1259
BseCI ATCGAT 2 cut(s) 846, 924
BseDI CCNNGG 2 cut(s) 521, 1258
BseGI GGATG 4 cut(s) 28, 532, 1032, 1356
BseLI CCNNNNNNNGG 5 cut(s) 418, 719, 797, 950, 1023
BseMII CTCAG 9 cut(s) 597, 723, 750, 783, 789, 828, 861, 906, 978
BseNI ACTGG 3 cut(s) 646, 1028, 1161
BseRI GAGGAG 1 cut(s) 488
BseXI GCAGC 2 cut(s) 98, 959
BseYI CCCAGC 2 cut(s) 577, 1277
BsgI GTGCAG 1 cut(s) 370
Bsh1285I CGRYCG 1 cut(s) 397
BshFI GGCC 5 cut(s) 237, 708, 786, 864, 1282
BshVI ATCGAT 2 cut(s) 846, 924
BsiEI CGRYCG 1 cut(s) 397
BsiHKAI GWGCWC 1 cut(s) 1224
BsiHKCI CYCGRG 1 cut(s) 325
BsiSI CCGG 2 cut(s) 705, 861
BslI CCNNNNNNNGG 5 cut(s) 418, 719, 797, 950, 1023
BsmAI GTCTC 4 cut(s) 455, 491, 659, 755
BsmBI CGTCTC 1 cut(s) 755
BsmI GAATGC 1 cut(s) 199
BsnI GGCC 5 cut(s) 237, 708, 786, 864, 1282
Bso31I GGTCTC 1 cut(s) 491
BsoBI CYCGRG 1 cut(s) 325
Bsp1286I GDGCHC 1 cut(s) 1224
Bsp1407I TGTACA 1 cut(s) 179
Bsp143I GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
BspACI CCGC 3 cut(s) 89, 285, 904
BspANI GGCC 5 cut(s) 237, 708, 786, 864, 1282
BspCNI CTCAG 9 cut(s) 598, 724, 751, 784, 788, 829, 862, 907, 979
BspDI ATCGAT 2 cut(s) 846, 924
BspHI TCATGA 2 cut(s) 229, 469
BspMAI CTGCAG 2 cut(s) 949, 1306
BspQI GCTCTTC 1 cut(s) 72
BspTNI GGTCTC 1 cut(s) 491
BsrFI RCCGGY 1 cut(s) 860
BsrGI TGTACA 1 cut(s) 179
BsrI ACTGG 3 cut(s) 646, 1028, 1161
BssAI RCCGGY 1 cut(s) 860
BssECI CCNNGG 2 cut(s) 521, 1258
BssMI GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
BssSI CACGAG 1 cut(s) 979
BssT1I CCWWGG 1 cut(s) 521
Bst2BI CACGAG 1 cut(s) 979
Bst2UI CCWGG 2 cut(s) 783, 1259
Bst4CI ACNGT 3 cut(s) 503, 722, 878
Bst6I CTCTTC 1 cut(s) 72
BstAUI TGTACA 1 cut(s) 179
BstBAI YACGTR 1 cut(s) 1207
BstC8I GCNNGC 6 cut(s) 84, 156, 710, 788, 862, 866
BstF5I GGATG 4 cut(s) 28, 532, 1032, 1356
BstKTI GATC 7 cut(s) 48, 546, 768, 846, 924, 973, 1186
BstMAI GTCTC 4 cut(s) 455, 491, 659, 755
BstMBI GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
BstMCI CGRYCG 1 cut(s) 397
BstMWI GCNNNNNNNGC 3 cut(s) 250, 384, 1053
BstNI CCWGG 2 cut(s) 783, 1259
BstNSI RCATGY 2 cut(s) 180, 585
BstSCI CCNGG 3 cut(s) 703, 781, 1257
BstSFI CTRYAG 2 cut(s) 945, 1302
BstV1I GCAGC 2 cut(s) 98, 959
Bsu15I ATCGAT 2 cut(s) 846, 924
BsuI GTATCC 1 cut(s) 1219
BsuRI GGCC 5 cut(s) 237, 708, 786, 864, 1282
BsuTUI ATCGAT 2 cut(s) 846, 924
BtsCI GGATG 4 cut(s) 28, 532, 1032, 1356
BtsI GCAGTG 1 cut(s) 207
BtsIMutI CAGTG 6 cut(s) 207, 449, 508, 639, 775, 801
Cac8I GCNNGC 6 cut(s) 84, 156, 710, 788, 862, 866
CaiI CAGNNNCTG 1 cut(s) 782
CciI TCATGA 2 cut(s) 229, 469
Cfr10I RCCGGY 1 cut(s) 860
Cfr13I GGNCC 1 cut(s) 1280
ClaI ATCGAT 2 cut(s) 846, 924
CseI GACGC 1 cut(s) 80
Csp6I GTAC 5 cut(s) 126, 180, 382, 723, 879
CviAII CATG 8 cut(s) 145, 168, 177, 230, 239, 470, 582, 691
CviQI GTAC 5 cut(s) 126, 180, 382, 723, 879
DpnI GATC 7 cut(s) 47, 545, 767, 845, 923, 972, 1185
DpnII GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
EaeI YGGCCR 4 cut(s) 235, 706, 784, 862
Eam1104I CTCTTC 1 cut(s) 72
EarI CTCTTC 1 cut(s) 72
Ecl136II GAGCTC 1 cut(s) 1222
Eco130I CCWWGG 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 1224
Eco31I GGTCTC 1 cut(s) 491
Eco32I GATATC 1 cut(s) 1309
Eco53kI GAGCTC 1 cut(s) 1222
Eco57I CTGAAG 5 cut(s) 51, 480, 825, 876, 903
Eco88I CYCGRG 1 cut(s) 325
EcoICRI GAGCTC 1 cut(s) 1222
EcoRII CCWGG 2 cut(s) 781, 1257
EcoRV GATATC 1 cut(s) 1309
EcoT14I CCWWGG 1 cut(s) 521
EcoT22I ATGCAT 1 cut(s) 173
EcoT38I GRGCYC 1 cut(s) 1224
ErhI CCWWGG 1 cut(s) 521
Esp3I CGTCTC 1 cut(s) 755
FaeI CATG 8 cut(s) 148, 171, 180, 233, 242, 473, 585, 694
FatI CATG 8 cut(s) 144, 167, 176, 229, 238, 469, 581, 690
FauI CCCGC 1 cut(s) 278
Fnu4HI GCNGC 2 cut(s) 87, 948
FokI GGATG 3 cut(s) 35, 539, 1019
FriOI GRGCYC 1 cut(s) 1224
Fsp4HI GCNGC 2 cut(s) 87, 948
FspBI CTAG 1 cut(s) 1199
GluI GCNGC 2 cut(s) 87, 948
GsaI CCCAGC 2 cut(s) 581, 1281
GsuI CTGGAG 3 cut(s) 1045, 1178, 1241
HaeIII GGCC 5 cut(s) 237, 708, 786, 864, 1282
HapII CCGG 2 cut(s) 705, 861
HgaI GACGC 1 cut(s) 80
Hin1II CATG 8 cut(s) 148, 171, 180, 233, 242, 473, 585, 694
HindIII AAGCTT 1 cut(s) 317
HinfI GANTC 9 cut(s) 439, 517, 635, 695, 773, 851, 1233, 1254, 1271
HpaII CCGG 2 cut(s) 705, 861
HphI GGTGA 1 cut(s) 1184
Hpy166II GTNNAC 3 cut(s) 126, 182, 258
Hpy188III TCNNGA 6 cut(s) 230, 325, 470, 605, 986, 1199
Hpy8I GTNNAC 3 cut(s) 126, 182, 258
HpyAV CCTTC 7 cut(s) 26, 107, 504, 1123, 1129, 1163, 1235
HpyCH4III ACNGT 3 cut(s) 503, 722, 878
HpyCH4IV ACGT 2 cut(s) 1206, 1342
HpyCH4V TGCA 8 cut(s) 171, 207, 387, 826, 947, 1041, 1100, 1304
HpyF10VI GCNNNNNNNGC 3 cut(s) 250, 384, 1053
HpySE526I ACGT 2 cut(s) 1206, 1342
Hsp92II CATG 8 cut(s) 148, 171, 180, 233, 242, 473, 585, 694
KroI GCCGGC 1 cut(s) 860
KroNI GCCGGC 1 cut(s) 862
Kzo9I GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
LguI GCTCTTC 1 cut(s) 72
LmnI GCTCC 4 cut(s) 250, 475, 578, 1227
Lsp1109I GCAGC 2 cut(s) 98, 959
LweI GCATC 5 cut(s) 14, 487, 718, 1034, 1087
MaeI CTAG 1 cut(s) 1199
MaeII ACGT 2 cut(s) 1206, 1342
MaeIII GTNAC 2 cut(s) 140, 770
MalI GATC 7 cut(s) 47, 545, 767, 845, 923, 972, 1185
MboI GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
MboII GAAGA 8 cut(s) 89, 434, 563, 853, 931, 1009, 1138, 1178
MfeI CAATTG 2 cut(s) 669, 1110
MhlI GDGCHC 1 cut(s) 1224
MlsI TGGCCA 2 cut(s) 237, 786
MluCI AATT 8 cut(s) 159, 201, 268, 352, 367, 669, 893, 1110
MluNI TGGCCA 2 cut(s) 237, 786
MlyI GAGTC 3 cut(s) 767, 1248, 1280
MnlI CCTC 7 cut(s) 13, 181, 451, 466, 523, 1020, 1096
Mox20I TGGCCA 2 cut(s) 237, 786
Mph1103I ATGCAT 1 cut(s) 173
MroNI GCCGGC 1 cut(s) 860
MroXI GAANNNNTTC 2 cut(s) 754, 939
MscI TGGCCA 2 cut(s) 237, 786
MseI TTAA 1 cut(s) 1265
Msp20I TGGCCA 2 cut(s) 237, 786
MspA1I CMGCKG 2 cut(s) 89, 950
MspI CCGG 2 cut(s) 705, 861
MspR9I CCNGG 3 cut(s) 705, 783, 1259
MunI CAATTG 2 cut(s) 669, 1110
Mva1269I GAATGC 1 cut(s) 199
MvaI CCWGG 2 cut(s) 783, 1259
MwoI GCNNNNNNNGC 3 cut(s) 250, 384, 1053
NaeI GCCGGC 1 cut(s) 862
NciI CCSGG 1 cut(s) 705
NdeII GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
NgoMIV GCCGGC 1 cut(s) 860
NlaIII CATG 8 cut(s) 148, 171, 180, 233, 242, 473, 585, 694
NmeAIII GCCGAG 2 cut(s) 835, 913
NmuCI GTSAC 1 cut(s) 770
NsiI ATGCAT 1 cut(s) 173
NspI RCATGY 2 cut(s) 180, 585
PagI TCATGA 2 cut(s) 229, 469
PciI ACATGT 1 cut(s) 176
PciSI GCTCTTC 1 cut(s) 72
PctI GAATGC 1 cut(s) 199
PdiI GCCGGC 1 cut(s) 862
PdmI GAANNNNTTC 2 cut(s) 754, 939
PfeI GAWTC 6 cut(s) 439, 517, 635, 695, 851, 1233
PflMI CCANNNNNTGG 1 cut(s) 1023
PkrI GCNGC 2 cut(s) 88, 949
PleI GAGTC 3 cut(s) 767, 1248, 1279
PpsI GAGTC 3 cut(s) 767, 1248, 1279
Ppu21I YACGTR 1 cut(s) 1207
PscI ACATGT 1 cut(s) 176
Psp124BI GAGCTC 1 cut(s) 1224
Psp6I CCWGG 2 cut(s) 781, 1257
PspFI CCCAGC 2 cut(s) 577, 1277
PspGI CCWGG 2 cut(s) 781, 1257
PspPI GGNCC 1 cut(s) 1280
PstI CTGCAG 2 cut(s) 949, 1306
PstNI CAGNNNCTG 1 cut(s) 782
PvuII CAGCTG 1 cut(s) 950
RsaI GTAC 5 cut(s) 127, 181, 383, 724, 880
RsaNI GTAC 5 cut(s) 126, 180, 382, 723, 879
SacI GAGCTC 1 cut(s) 1224
SapI GCTCTTC 1 cut(s) 72
SaqAI TTAA 1 cut(s) 1265
SatI GCNGC 2 cut(s) 87, 948
Sau3AI GATC 7 cut(s) 45, 543, 765, 843, 921, 970, 1183
Sau96I GGNCC 1 cut(s) 1280
ScaI AGTACT 1 cut(s) 880
SchI GAGTC 3 cut(s) 767, 1248, 1280
ScrFI CCNGG 3 cut(s) 705, 783, 1259
SduI GDGCHC 1 cut(s) 1224
SfaNI GCATC 5 cut(s) 14, 487, 718, 1034, 1087
SfcI CTRYAG 2 cut(s) 945, 1302
SmlI CTYRAG 1 cut(s) 1058
SmoI CTYRAG 1 cut(s) 1058
Sse9I AATT 8 cut(s) 159, 201, 268, 352, 367, 669, 893, 1110
SsiI CCGC 3 cut(s) 89, 285, 904
SspMI CTAG 1 cut(s) 1199
SstI GAGCTC 1 cut(s) 1224
StyD4I CCNGG 3 cut(s) 703, 781, 1257
StyI CCWWGG 1 cut(s) 521
TaaI ACNGT 3 cut(s) 503, 722, 878
TaiI ACGT 2 cut(s) 1209, 1345
TaqI TCGA 6 cut(s) 18, 60, 274, 846, 924, 1311
TaqII GACCGA 2 cut(s) 411, 473
TasI AATT 8 cut(s) 159, 201, 268, 352, 367, 669, 893, 1110
TatI WGTACW 4 cut(s) 125, 179, 381, 878
TfiI GAWTC 6 cut(s) 439, 517, 635, 695, 851, 1233
Tru1I TTAA 1 cut(s) 1265
Tru9I TTAA 1 cut(s) 1265
TscAI CASTG 6 cut(s) 214, 449, 508, 646, 775, 808
TseFI GTSAC 1 cut(s) 770
TseI GCWGC 2 cut(s) 86, 947
Tsp45I GTSAC 1 cut(s) 770
TspDTI ATGAA 8 cut(s) 39, 66, 126, 161, 458, 547, 564, 864
TspGWI ACGGA 2 cut(s) 1245, 1266
TspRI CASTG 6 cut(s) 214, 449, 508, 646, 775, 808
Van91I CCANNNNNTGG 1 cut(s) 1023
XapI RAATTY 4 cut(s) 201, 268, 352, 893
XbaI TCTAGA 1 cut(s) 1198
XceI RCATGY 2 cut(s) 180, 585
XmnI GAANNNNTTC 2 cut(s) 754, 939
XspI CTAG 1 cut(s) 1199
ZrmI AGTACT 1 cut(s) 880
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.