Rmu_sc0007833.1_g000007

E3 ubiquitin-protein ligase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007833.1
Physical Location & Seq
Reverse (-)
27293 .. 35484
8192 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007833.1_g000007.1.cds

Sequence Viewer

Length: 1464 bp
atgatccactgccggcatagtcatgatagtgtagtttggagtactaaggcagtgaattatctgctgcctgtcccagtatggagacgcctcaccctcaaagatcggggttttgcgccgaagctgttgattgtgttggtgaagatggaccctgcgttcgcggatgagggccacgacggtgagaccgtgacaatcgaagagtatctgaaggatgttgaggaccaggaactggaagctgatttggttttgggtggcgatgaaggcaaggagtgtacctataataatgggtacatgaagaggcaagcaattttctcatgcttgacttgcacaccagatggtaatgctggagtttgcacagcttgcagcttgtcttgtcatgatggccatgagattccaagagatggagaaggtgaacctctatatgaggattttatatgcgcagcatgctcaaaagtgtgctcctttctaagactatatactcgaatcatcttggaagcaaggagccaaaacaattcttctgttaagactggaaaagataaagaagttatagcagatgaagtacctttagcttgtggatctggaaagctagaaaatattcctcagagttctactaccaactctgaatctgtatctggaggggaagtttcacttggagaaaattctgggaagaatatatgttcagagcaatgtgctacagatgctgatacacgtcctacttgcgctattggagttgatctggcagttgcttcccctgtttcagagagtaagccaatgtttctttcaaaaaactggcggaatgctctttgcagttgtgaaaagtgcagtgaattttataaacagaagcatattaattttctaattgacaaggaggactcaatcattgagtatgagaaaatggcaaagcagaagagagaagaaaagttgcagcaacgtgagggggcagagttaagtatgctggataaccttggccatgtagagaaaattgagattctgaatggtattgcagatatcaaagatgagctttgttctttcctgggatcatttgatccatcgaaagcaatcacatctgctgatgtccaccagatttttgagaatctaaagaaacgcaggcgtgtagagaaccccaagatcatgggaaactgcatggagacatgcgcacagaagcagcaagaagaggatcaaatgcagcagatgcagaagcagaaaggagatgagattaggtttgggaaggaaggcatcaattcgggggaagatggaaaattgagggtaaagattgtgctgacaaaagaagagctacagatgttgatgcttcagctgcaagacaaaggagggaagaagagcttagaagaagttctggaggagatccagaaaggcagaggtaagttagtactagttgaagaagcttggaagccttctttggacagtatcatggaatgccctgaactatttgaagatatggatagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

487

Amino Acids

54.46

Weight (kDa)

5.0

Isoelectric Point (pI)

54.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 831
Acc16I TGCGCA 2 cut(s) 436, 1153
AccB7I CCANNNNNTGG 2 cut(s) 226, 398
AccII CGCG 1 cut(s) 158
AciI CCGC 2 cut(s) 158, 790
AclWI GGATC 5 cut(s) 580, 1037, 1042, 1182, 1354
AcoI YGGCCR 2 cut(s) 379, 964
AcsI RAATTY 2 cut(s) 655, 824
AcuI CTGAAG 2 cut(s) 224, 1292
AcyI GRCGYC 1 cut(s) 85
AfaI GTAC 5 cut(s) 43, 271, 287, 558, 1386
AfiI CCNNNNNNNGG 2 cut(s) 226, 398
AflIII ACRYGT 1 cut(s) 704
AgsI TTSAA 3 cut(s) 780, 1394, 1448
AhlI ACTAGT 1 cut(s) 1387
AjiI CACGTC 1 cut(s) 707
AjnI CCWGG 2 cut(s) 219, 1029
AjuI GAANNNNNNNTTGG 6 cut(s) 630, 662, 760, 792, 1397, 1429
AleI CACNNNNGTG 1 cut(s) 174
AloI GAACNNNNNNTCC 2 cut(s) 137, 169
Alw21I GWGCWC 1 cut(s) 458
Alw26I GTCTC 3 cut(s) 76, 173, 1139
AlwI GGATC 5 cut(s) 580, 1037, 1042, 1182, 1354
AlwNI CAGNNNCTG 2 cut(s) 226, 698
AoxI GGCC 3 cut(s) 166, 379, 964
ApeKI GCWGC 7 cut(s) 64, 360, 437, 922, 1162, 1183, 1312
ApoI RAATTY 2 cut(s) 655, 824
ArsI GACNNNNNNTTYG 2 cut(s) 137, 169
AseI ATTAAT 1 cut(s) 846
Asp700I GAANNNNTTC 2 cut(s) 591, 1347
AspLEI GCGC 4 cut(s) 115, 437, 719, 1154
AspS9I GGNCC 3 cut(s) 145, 166, 217
AsuHPI GGTGA 4 cut(s) 82, 148, 188, 419
AvaII GGWCC 2 cut(s) 145, 217
BalI TGGCCA 2 cut(s) 381, 966
Bbv12I GWGCWC 1 cut(s) 458
BbvI GCAGC 7 cut(s) 51, 372, 449, 934, 1174, 1195, 1299
BccI CCATC 6 cut(s) 136, 326, 371, 392, 1054, 1244
BciT130I CCWGG 2 cut(s) 221, 1031
BcoDI GTCTC 3 cut(s) 76, 173, 1139
BcuI ACTAGT 1 cut(s) 1387
BfaI CTAG 2 cut(s) 584, 1388
BfmI CTRYAG 2 cut(s) 690, 1292
BisI GCNGC 7 cut(s) 65, 361, 438, 923, 1163, 1184, 1313
BlsI GCNGC 7 cut(s) 66, 362, 439, 924, 1164, 1185, 1314
BmcAI AGTACT 2 cut(s) 43, 1386
Bme1390I CCNGG 2 cut(s) 221, 1031
Bme18I GGWCC 2 cut(s) 145, 217
BmgBI CACGTC 1 cut(s) 707
BmgT120I GGNCC 3 cut(s) 145, 166, 217
BmiI GGNNCC 2 cut(s) 147, 500
BmrFI CCNGG 2 cut(s) 221, 1031
BmrI ACTGGG 1 cut(s) 68
BmsI GCATC 4 cut(s) 685, 1179, 1242, 1293
BmuI ACTGGG 1 cut(s) 68
BpmI CTGGAG 3 cut(s) 363, 651, 1373
BsaHI GRCGYC 1 cut(s) 85
BsaI GGTCTC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 961, 1030
BsaXI ACNNNNNCTCC 2 cut(s) 624, 654
Bsc4I CCNNNNNNNGG 2 cut(s) 226, 398
Bse118I RCCGGY 1 cut(s) 12
Bse1I ACTGG 4 cut(s) 74, 231, 529, 791
Bse3DI GCAATG 1 cut(s) 689
BseBI CCWGG 2 cut(s) 221, 1031
BseDI CCNNGG 2 cut(s) 961, 1030
BseGI GGATG 2 cut(s) 166, 214
BseLI CCNNNNNNNGG 2 cut(s) 226, 398
BseMI GCAATG 1 cut(s) 689
BseMII CTCAG 1 cut(s) 611
BseNI ACTGG 4 cut(s) 74, 231, 529, 791
BseRI GAGGAG 1 cut(s) 1370
BseXI GCAGC 7 cut(s) 51, 372, 449, 934, 1174, 1195, 1299
BsgI GTGCAG 1 cut(s) 838
Bsh1236I CGCG 1 cut(s) 158
BshFI GGCC 3 cut(s) 168, 381, 966
BsiHKAI GWGCWC 1 cut(s) 458
BsiSI CCGG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 56
BslI CCNNNNNNNGG 2 cut(s) 226, 398
BsmAI GTCTC 3 cut(s) 76, 173, 1139
BsmBI CGTCTC 1 cut(s) 76
BsmFI GGGAC 1 cut(s) 56
BsmI GAATGC 2 cut(s) 799, 1436
BsnI GGCC 3 cut(s) 168, 381, 966
Bso31I GGTCTC 1 cut(s) 173
Bsp1286I GDGCHC 1 cut(s) 458
Bsp143I GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
BspACI CCGC 2 cut(s) 158, 790
BspANI GGCC 3 cut(s) 168, 381, 966
BspCNI CTCAG 1 cut(s) 610
BspFNI CGCG 1 cut(s) 158
BspHI TCATGA 2 cut(s) 22, 373
BspLI GGNNCC 2 cut(s) 147, 500
BspPI GGATC 5 cut(s) 580, 1037, 1042, 1182, 1354
BspQI GCTCTTC 2 cut(s) 1281, 1328
BspTNI GGTCTC 1 cut(s) 173
BsrDI GCAATG 1 cut(s) 689
BsrFI RCCGGY 1 cut(s) 12
BsrI ACTGG 4 cut(s) 74, 231, 529, 791
BssAI RCCGGY 1 cut(s) 12
BssECI CCNNGG 2 cut(s) 961, 1030
BssMI GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
BssNI GRCGYC 1 cut(s) 85
BssT1I CCWWGG 1 cut(s) 961
Bst2UI CCWGG 2 cut(s) 221, 1031
Bst4CI ACNGT 3 cut(s) 176, 184, 1421
Bst6I CTCTTC 6 cut(s) 189, 287, 899, 1164, 1281, 1328
BstACI GRCGYC 1 cut(s) 85
BstAPI GCANNNNNTGC 2 cut(s) 357, 1189
BstC8I GCNNGC 5 cut(s) 14, 300, 358, 442, 1106
BstDEI CTNAG 4 cut(s) 45, 464, 597, 1339
BstF5I GGATG 2 cut(s) 166, 214
BstFNI CGCG 1 cut(s) 158
BstHHI GCGC 4 cut(s) 115, 437, 719, 1154
BstKTI GATC 9 cut(s) 6, 103, 575, 733, 1037, 1045, 1128, 1177, 1362
BstMAI GTCTC 3 cut(s) 76, 173, 1139
BstMBI GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
BstMWI GCNNNNNNNGC 7 cut(s) 258, 321, 357, 441, 695, 1189, 1312
BstNI CCWGG 2 cut(s) 221, 1031
BstNSI RCATGY 2 cut(s) 444, 1152
BstSCI CCNGG 2 cut(s) 219, 1029
BstSFI CTRYAG 2 cut(s) 690, 1292
BstUI CGCG 1 cut(s) 158
BstV1I GCAGC 7 cut(s) 51, 372, 449, 934, 1174, 1195, 1299
BstX2I RGATCY 2 cut(s) 572, 1359
BstXI CCANNNNNNTGG 1 cut(s) 1129
BstYI RGATCY 2 cut(s) 572, 1359
BsuRI GGCC 3 cut(s) 168, 381, 966
BtgZI GCGATG 1 cut(s) 267
BtrI CACGTC 1 cut(s) 707
BtsCI GGATG 2 cut(s) 166, 214
BtsI GCAGTG 3 cut(s) 7, 57, 826
BtsIMutI CAGTG 3 cut(s) 7, 57, 826
Cac8I GCNNGC 5 cut(s) 14, 300, 358, 442, 1106
CaiI CAGNNNCTG 2 cut(s) 226, 698
CciI TCATGA 2 cut(s) 22, 373
CfoI GCGC 4 cut(s) 115, 437, 719, 1154
Cfr10I RCCGGY 1 cut(s) 12
Cfr13I GGNCC 3 cut(s) 145, 166, 217
CseI GACGC 1 cut(s) 93
Csp6I GTAC 5 cut(s) 42, 270, 286, 557, 1385
CviQI GTAC 5 cut(s) 42, 270, 286, 557, 1385
DdeI CTNAG 4 cut(s) 45, 464, 597, 1339
DpnI GATC 9 cut(s) 5, 102, 574, 732, 1036, 1044, 1127, 1176, 1361
DpnII GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
EaeI YGGCCR 2 cut(s) 379, 964
Eam1104I CTCTTC 6 cut(s) 189, 287, 899, 1164, 1281, 1328
EarI CTCTTC 6 cut(s) 189, 287, 899, 1164, 1281, 1328
EciI GGCGGA 1 cut(s) 805
Eco130I CCWWGG 1 cut(s) 961
Eco31I GGTCTC 1 cut(s) 173
Eco32I GATATC 1 cut(s) 1006
Eco47I GGWCC 2 cut(s) 145, 217
Eco57I CTGAAG 2 cut(s) 224, 1292
EcoRII CCWGG 2 cut(s) 219, 1029
EcoRV GATATC 1 cut(s) 1006
EcoT14I CCWWGG 1 cut(s) 961
ErhI CCWWGG 1 cut(s) 961
Esp3I CGTCTC 1 cut(s) 76
FalI AAGNNNNNCTT 6 cut(s) 630, 662, 1002, 1034, 1322, 1354
FaqI GGGAC 1 cut(s) 56
Fnu4HI GCNGC 7 cut(s) 65, 361, 438, 923, 1163, 1184, 1313
FokI GGATG 2 cut(s) 173, 221
Fsp4HI GCNGC 7 cut(s) 65, 361, 438, 923, 1163, 1184, 1313
FspAI RTGCGCAY 1 cut(s) 1153
FspBI CTAG 2 cut(s) 584, 1388
FspI TGCGCA 2 cut(s) 436, 1153
GlaI GCGC 4 cut(s) 114, 436, 718, 1153
GluI GCNGC 7 cut(s) 65, 361, 438, 923, 1163, 1184, 1313
GsuI CTGGAG 3 cut(s) 363, 651, 1373
HaeIII GGCC 3 cut(s) 168, 381, 966
HapII CCGG 1 cut(s) 13
HgaI GACGC 1 cut(s) 93
HhaI GCGC 4 cut(s) 115, 437, 719, 1154
Hin1I GRCGYC 1 cut(s) 85
Hin6I GCGC 4 cut(s) 113, 435, 717, 1152
HinP1I GCGC 4 cut(s) 113, 435, 717, 1152
HindIII AAGCTT 1 cut(s) 1398
HinfI GANTC 6 cut(s) 388, 480, 620, 869, 985, 1090
HpaII CCGG 1 cut(s) 13
HphI GGTGA 4 cut(s) 82, 148, 188, 419
Hpy166II GTNNAC 3 cut(s) 270, 410, 1075
Hpy188I TCNGA 6 cut(s) 204, 600, 619, 679, 757, 990
Hpy188III TCNNGA 6 cut(s) 23, 374, 576, 630, 1352, 1363
Hpy8I GTNNAC 3 cut(s) 270, 410, 1075
Hpy99I CGWCG 1 cut(s) 176
HpyAV CCTTC 6 cut(s) 199, 251, 398, 1219, 1223, 1419
HpyCH4III ACNGT 3 cut(s) 176, 184, 1421
HpyCH4IV ACGT 2 cut(s) 706, 928
HpyF10VI GCNNNNNNNGC 7 cut(s) 258, 321, 357, 441, 695, 1189, 1312
HpyF3I CTNAG 4 cut(s) 45, 464, 597, 1339
HpySE526I ACGT 2 cut(s) 706, 928
Hsp92I GRCGYC 1 cut(s) 85
HspAI GCGC 4 cut(s) 113, 435, 717, 1152
KroI GCCGGC 1 cut(s) 12
KroNI GCCGGC 1 cut(s) 14
Kzo9I GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
LguI GCTCTTC 2 cut(s) 1281, 1328
LmnI GCTCC 2 cut(s) 461, 498
Lsp1109I GCAGC 7 cut(s) 51, 372, 449, 934, 1174, 1195, 1299
LweI GCATC 4 cut(s) 685, 1179, 1242, 1293
MaeI CTAG 2 cut(s) 584, 1388
MaeII ACGT 2 cut(s) 706, 928
MaeIII GTNAC 1 cut(s) 184
MalI GATC 9 cut(s) 5, 102, 574, 732, 1036, 1044, 1127, 1176, 1361
MboI GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
MflI RGATCY 2 cut(s) 572, 1359
MhlI GDGCHC 1 cut(s) 458
MlsI TGGCCA 2 cut(s) 381, 966
MluNI TGGCCA 2 cut(s) 381, 966
MlyI GAGTC 1 cut(s) 863
Mox20I TGGCCA 2 cut(s) 381, 966
MroNI GCCGGC 1 cut(s) 12
MroXI GAANNNNTTC 2 cut(s) 591, 1347
MscI TGGCCA 2 cut(s) 381, 966
MseI TTAA 3 cut(s) 519, 846, 944
MslI CAYNNNNRTG 3 cut(s) 21, 27, 174
Msp20I TGGCCA 2 cut(s) 381, 966
MspA1I CMGCKG 1 cut(s) 1312
MspI CCGG 1 cut(s) 13
MspR9I CCNGG 2 cut(s) 221, 1031
Mva1269I GAATGC 2 cut(s) 799, 1436
MvaI CCWGG 2 cut(s) 221, 1031
MvnI CGCG 1 cut(s) 158
MwoI GCNNNNNNNGC 7 cut(s) 258, 321, 357, 441, 695, 1189, 1312
NaeI GCCGGC 1 cut(s) 14
NdeII GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
NgoMIV GCCGGC 1 cut(s) 12
NlaIV GGNNCC 2 cut(s) 147, 500
NmuCI GTSAC 1 cut(s) 184
NsbI TGCGCA 2 cut(s) 436, 1153
NspI RCATGY 2 cut(s) 444, 1152
OliI CACNNNNGTG 1 cut(s) 174
PaeI GCATGC 1 cut(s) 444
PagI TCATGA 2 cut(s) 22, 373
PciSI GCTCTTC 2 cut(s) 1281, 1328
PcsI WCGNNNNNNNCGW 1 cut(s) 180
PctI GAATGC 2 cut(s) 799, 1436
PdiI GCCGGC 1 cut(s) 14
PdmI GAANNNNTTC 2 cut(s) 591, 1347
PfeI GAWTC 5 cut(s) 388, 480, 620, 985, 1090
PflMI CCANNNNNTGG 2 cut(s) 226, 398
PkrI GCNGC 7 cut(s) 66, 362, 439, 924, 1164, 1185, 1314
PleI GAGTC 1 cut(s) 863
PpsI GAGTC 1 cut(s) 863
PshBI ATTAAT 1 cut(s) 846
PsiI TTATAA 1 cut(s) 831
Psp6I CCWGG 2 cut(s) 219, 1029
PspGI CCWGG 2 cut(s) 219, 1029
PspN4I GGNNCC 2 cut(s) 147, 500
PspPI GGNCC 3 cut(s) 145, 166, 217
PstNI CAGNNNCTG 2 cut(s) 226, 698
PsuI RGATCY 2 cut(s) 572, 1359
PvuII CAGCTG 1 cut(s) 1312
RsaI GTAC 5 cut(s) 43, 271, 287, 558, 1386
RsaNI GTAC 5 cut(s) 42, 270, 286, 557, 1385
RseI CAYNNNNRTG 3 cut(s) 21, 27, 174
SapI GCTCTTC 2 cut(s) 1281, 1328
SaqAI TTAA 3 cut(s) 519, 846, 944
SatI GCNGC 7 cut(s) 65, 361, 438, 923, 1163, 1184, 1313
Sau3AI GATC 9 cut(s) 3, 100, 572, 730, 1034, 1042, 1125, 1174, 1359
Sau96I GGNCC 3 cut(s) 145, 166, 217
ScaI AGTACT 2 cut(s) 43, 1386
SchI GAGTC 1 cut(s) 863
ScrFI CCNGG 2 cut(s) 221, 1031
SduI GDGCHC 1 cut(s) 458
SfaNI GCATC 4 cut(s) 685, 1179, 1242, 1293
SfcI CTRYAG 2 cut(s) 690, 1292
SinI GGWCC 2 cut(s) 145, 217
SmiMI CAYNNNNRTG 3 cut(s) 21, 27, 174
SpeI ACTAGT 1 cut(s) 1387
SphI GCATGC 1 cut(s) 444
SsiI CCGC 2 cut(s) 158, 790
SspI AATATT 1 cut(s) 592
SspMI CTAG 2 cut(s) 584, 1388
StyD4I CCNGG 2 cut(s) 219, 1029
StyI CCWWGG 1 cut(s) 961
TaaI ACNGT 3 cut(s) 176, 184, 1421
TaiI ACGT 2 cut(s) 709, 931
TaqI TCGA 3 cut(s) 192, 478, 1049
TatI WGTACW 2 cut(s) 41, 1384
TfiI GAWTC 5 cut(s) 388, 480, 620, 985, 1090
Tru1I TTAA 3 cut(s) 519, 846, 944
Tru9I TTAA 3 cut(s) 519, 846, 944
TscAI CASTG 3 cut(s) 14, 57, 826
TseFI GTSAC 1 cut(s) 184
TseI GCWGC 7 cut(s) 64, 360, 437, 922, 1162, 1183, 1312
Tsp45I GTSAC 1 cut(s) 184
TspDTI ATGAA 3 cut(s) 270, 305, 567
TspRI CASTG 3 cut(s) 14, 57, 826
Van91I CCANNNNNTGG 2 cut(s) 226, 398
VpaK11BI GGWCC 2 cut(s) 145, 217
VspI ATTAAT 1 cut(s) 846
XapI RAATTY 2 cut(s) 655, 824
XceI RCATGY 2 cut(s) 444, 1152
XmnI GAANNNNTTC 2 cut(s) 591, 1347
XspI CTAG 2 cut(s) 584, 1388
ZrmI AGTACT 2 cut(s) 43, 1386
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.