Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006747

Physical Location & Seq

Genomic Coordinates Reverse (-)

33373667 .. 33379777

Gene Structure 6111 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00410890.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGAATGCATCTGAATTTGCAAGGATATCATCAAAATGGCTCGGAGATGCCAAGTGCAGCTGTACAGCAGTTGAGGCTCTGTCTTCAGGCAACGGTGCCAGTTTTAAGCTGTTGTTCCTACCGTACCGTGGCCGCCCCTATCCCGATCCGGATGTGGAAGAACAAGTAGAGATGATACGGTCGCTTCTTCGTGAGGACCGGTTCCATGAGGAACATATTGGTCTTGATTCCTCCGACGAGATTCCAAGAGATGGAGAAGGTGAACCTCTATATGACGATTTTATATGCGCAGCATGCTCAAACGTTTGCTCCTTTCTAAGACTATATACTCGAATCATCTTGGAAGCAAGGAGCCAAAACAATTCTTCGTTAAGACCGGAAAAGATAAAGAAGTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-UBR

Protein Analysis

132

Amino Acids

14.93

Weight (kDa)

5.08

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23860 AT4G23860 AT4G23860 AT4G23860
fragaria_vesca	FvH4_5g04600 FvH4_5g04600 FvH4_5g04600
malus_domestica	MD06G1107100.v1.1 MD14G1128900.v1.1
prunus_persica	Prupe.5G120100_v2.0.a1 Prupe.5G120100_v2.0.a1
pyrus_communis	pycom06g10120
rosa_chinensis	RchiOBHm_Chr7g0194791
rosa_laevigata	RLG00000004169
rosa_multiflora	Rmu_sc0004722.1_g000002 Rmu_sc0007833.1_g000007
rosa_roxburghii	Rroxscaffold_3G00235070 Rroxscaffold_3G00260980 Rroxscaffold_6G00410890
rosa_rugosa	Rorug07G0018400.1
rosa_samantha	Rh7AG146100 Rh7BG146000 Rh7CG150000 Rh7DG147400
rosa_wichuraiana	Rw4G009500 Rw7G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	95
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccIII	TCCGGA	1 cut(s)	148
AciI	CCGC	1 cut(s)	133
AclI	AACGTT	1 cut(s)	303
AclWI	GGATC	1 cut(s)	140
AcoI	YGGCCR	1 cut(s)	130
AcsI	RAATTY	1 cut(s)	14
AcuI	CTGAAG	1 cut(s)	69
AfaI	GTAC	2 cut(s)	64, 125
AfiI	CCNNNNNNNGG	2 cut(s)	128, 251
AgeI	ACCGGT	1 cut(s)	198
AluBI	AGCT	2 cut(s)	60, 109
AluI	AGCT	2 cut(s)	60, 109
AlwI	GGATC	1 cut(s)	140
Aor13HI	TCCGGA	1 cut(s)	148
AoxI	GGCC	1 cut(s)	130
ApeKI	GCWGC	2 cut(s)	57, 290
ApoI	RAATTY	1 cut(s)	14
AsiGI	ACCGGT	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	1 cut(s)	196
AsuHPI	GGTGA	1 cut(s)	272
AvaII	GGWCC	1 cut(s)	196
BanI	GGYRCC	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	75
BbvI	GCAGC	2 cut(s)	69, 302
BccI	CCATC	1 cut(s)	245
BisI	GCNGC	3 cut(s)	58, 133, 291
BlsI	GCNGC	3 cut(s)	59, 134, 292
Bme18I	GGWCC	1 cut(s)	196
BmgT120I	GGNCC	1 cut(s)	196
BmiI	GGNNCC	3 cut(s)	97, 203, 353
BmsI	GCATC	2 cut(s)	17, 37
BpiI	GAAGAC	1 cut(s)	75
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	3 cut(s)	148, 198, 376
BsaXI	ACNNNNNCTCC	2 cut(s)	293, 323
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 251
Bse118I	RCCGGY	1 cut(s)	198
Bse1I	ACTGG	1 cut(s)	99
BseAI	TCCGGA	1 cut(s)	148
BseDI	CCNNGG	1 cut(s)	127
BseGI	GGATG	1 cut(s)	157
BseLI	CCNNNNNNNGG	2 cut(s)	128, 251
BseNI	ACTGG	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	69, 302
BsgI	GTGCAG	1 cut(s)	76
Bsh1285I	CGRYCG	1 cut(s)	182
BshFI	GGCC	1 cut(s)	132
BshNI	GGYRCC	1 cut(s)	95
BshTI	ACCGGT	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	182
BsiSI	CCGG	3 cut(s)	149, 199, 377
BslI	CCNNNNNNNGG	2 cut(s)	128, 251
BsmI	GAATGC	1 cut(s)	10
BsnI	GGCC	1 cut(s)	132
Bsp13I	TCCGGA	1 cut(s)	148
Bsp1407I	TGTACA	1 cut(s)	62
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	133
BspANI	GGCC	1 cut(s)	132
BspEI	TCCGGA	1 cut(s)	148
BspLI	GGNNCC	3 cut(s)	97, 203, 353
BspPI	GGATC	1 cut(s)	140
BspT107I	GGYRCC	1 cut(s)	95
BsrFI	RCCGGY	1 cut(s)	198
BsrGI	TGTACA	1 cut(s)	62
BsrI	ACTGG	1 cut(s)	99
BssAI	RCCGGY	1 cut(s)	198
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	1 cut(s)	145
Bst4CI	ACNGT	4 cut(s)	95, 123, 128, 180
BstAUI	TGTACA	1 cut(s)	62
BstC8I	GCNNGC	1 cut(s)	295
BstDEI	CTNAG	1 cut(s)	317
BstDSI	CCRYGG	1 cut(s)	127
BstF5I	GGATG	1 cut(s)	157
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMCI	CGRYCG	1 cut(s)	182
BstMWI	GCNNNNNNNGC	2 cut(s)	74, 294
BstNSI	RCATGY	1 cut(s)	297
BstV1I	GCAGC	2 cut(s)	69, 302
BstV2I	GAAGAC	1 cut(s)	75
BsuRI	GGCC	1 cut(s)	132
BtgI	CCRYGG	1 cut(s)	127
BtsCI	GGATG	1 cut(s)	157
Cac8I	GCNNGC	1 cut(s)	295
CfoI	GCGC	1 cut(s)	290
Cfr10I	RCCGGY	1 cut(s)	198
Cfr13I	GGNCC	1 cut(s)	196
Csp6I	GTAC	2 cut(s)	63, 124
CspAI	ACCGGT	1 cut(s)	198
CviAII	CATG	2 cut(s)	206, 294
CviJI	RGCY	6 cut(s)	40, 60, 77, 109, 132, 354
CviKI_1	RGCY	6 cut(s)	40, 60, 77, 109, 132, 354
CviQI	GTAC	2 cut(s)	63, 124
DdeI	CTNAG	1 cut(s)	317
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
EaeI	YGGCCR	1 cut(s)	130
Eco32I	GATATC	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	196
Eco57I	CTGAAG	1 cut(s)	69
EcoRV	GATATC	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	10
FaeI	CATG	2 cut(s)	209, 297
FatI	CATG	2 cut(s)	205, 293
Fnu4HI	GCNGC	3 cut(s)	58, 133, 291
FokI	GGATG	1 cut(s)	164
Fsp4HI	GCNGC	3 cut(s)	58, 133, 291
FspI	TGCGCA	1 cut(s)	289
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	3 cut(s)	58, 133, 291
HaeIII	GGCC	1 cut(s)	132
HapII	CCGG	3 cut(s)	149, 199, 377
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	2 cut(s)	209, 297
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	227, 241, 333
HpaII	CCGG	3 cut(s)	149, 199, 377
HphI	GGTGA	1 cut(s)	272
Hpy166II	GTNNAC	1 cut(s)	263
Hpy188I	TCNGA	3 cut(s)	13, 44, 235
Hpy188III	TCNNGA	4 cut(s)	143, 149, 191, 224
Hpy8I	GTNNAC	1 cut(s)	263
Hpy99I	CGWCG	1 cut(s)	239
HpyAV	CCTTC	1 cut(s)	251
HpyCH4III	ACNGT	4 cut(s)	95, 123, 128, 180
HpyCH4IV	ACGT	1 cut(s)	303
HpyCH4V	TGCA	3 cut(s)	8, 20, 57
HpyF10VI	GCNNNNNNNGC	2 cut(s)	74, 294
HpyF3I	CTNAG	1 cut(s)	317
HpySE526I	ACGT	1 cut(s)	303
Hsp92II	CATG	2 cut(s)	209, 297
HspAI	GCGC	1 cut(s)	288
Kpn2I	TCCGGA	1 cut(s)	148
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	2 cut(s)	314, 351
LpnPI	CCDG	5 cut(s)	72, 112, 162, 212, 390
Lsp1109I	GCAGC	2 cut(s)	69, 302
LweI	GCATC	2 cut(s)	17, 37
MaeII	ACGT	1 cut(s)	303
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	4 cut(s)	75, 170, 179, 357
MluCI	AATT	2 cut(s)	14, 361
MmeI	TCCRAC	1 cut(s)	258
MnlI	CCTC	5 cut(s)	67, 187, 202, 241, 276
Mph1103I	ATGCAT	1 cut(s)	10
MroI	TCCGGA	1 cut(s)	148
MseI	TTAA	2 cut(s)	105, 371
MslI	CAYNNNNRTG	1 cut(s)	34
MspA1I	CMGCKG	1 cut(s)	60
MspI	CCGG	3 cut(s)	149, 199, 377
Mva1269I	GAATGC	1 cut(s)	10
MwoI	GCNNNNNNNGC	2 cut(s)	74, 294
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	2 cut(s)	209, 297
NlaIV	GGNNCC	3 cut(s)	97, 203, 353
NsbI	TGCGCA	1 cut(s)	289
NsiI	ATGCAT	1 cut(s)	10
NspI	RCATGY	1 cut(s)	297
PaeI	GCATGC	1 cut(s)	297
PctI	GAATGC	1 cut(s)	10
PfeI	GAWTC	3 cut(s)	227, 241, 333
PflMI	CCANNNNNTGG	1 cut(s)	251
PinAI	ACCGGT	1 cut(s)	198
PkrI	GCNGC	3 cut(s)	59, 134, 292
Psp1406I	AACGTT	1 cut(s)	303
PspN4I	GGNNCC	3 cut(s)	97, 203, 353
PspPI	GGNCC	1 cut(s)	196
PvuII	CAGCTG	1 cut(s)	60
RsaI	GTAC	2 cut(s)	64, 125
RsaNI	GTAC	2 cut(s)	63, 124
RseI	CAYNNNNRTG	1 cut(s)	34
SaqAI	TTAA	2 cut(s)	105, 371
SatI	GCNGC	3 cut(s)	58, 133, 291
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	1 cut(s)	196
SetI	ASST	5 cut(s)	62, 111, 262, 268, 306
SfaNI	GCATC	2 cut(s)	17, 37
SinI	GGWCC	1 cut(s)	196
SmiMI	CAYNNNNRTG	1 cut(s)	34
SphI	GCATGC	1 cut(s)	297
Sse9I	AATT	2 cut(s)	14, 361
SsiI	CCGC	1 cut(s)	133
TaaI	ACNGT	4 cut(s)	95, 123, 128, 180
TaiI	ACGT	1 cut(s)	306
TaqI	TCGA	1 cut(s)	331
TasI	AATT	2 cut(s)	14, 361
TatI	WGTACW	1 cut(s)	62
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	227, 241, 333
Tru1I	TTAA	2 cut(s)	105, 371
Tru9I	TTAA	2 cut(s)	105, 371
TseI	GCWGC	2 cut(s)	57, 290
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	196
XapI	RAATTY	1 cut(s)	14
XceI	RCATGY	1 cut(s)	297
Zsp2I	ATGCAT	1 cut(s)	10

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.