Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004722.1

Orthogroup ID

OG0006747

Physical Location & Seq

Genomic Coordinates Forward (+)

7128 .. 11299

Gene Structure 4172 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004722.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

atgtctgcatctccccttgacgactacggtctttggagttctgataacttccgcaaacgacggggttttgcgccgaagctgttgattgtgttggtgaagatggaccctgcgttcgcggatgagggccacgacggtgagaccgtgacaatcgaagagtatctgaaggatgttgaggaccaggaactggaagctgatttggttttgggtggcgatgaaggcaaggagtgtacctataataatgggtacatgaagaggcaagcaattttctcatgcttgacttgcacaccagatggtaatgctggagtttgcacagcttgcagcttgtcttgtcatgatggccatgagattgtggaactatggaccaagagaaacttcagatgtgattgtggaaattcaaaatttggtgagttctactgcaagattttcccaagtaaagatattgaaaatgttgagaactcctacaatcataacttcaaaggttcctactgtacctgtggccgcccctatcctgatccagacgtggaagaacaagtagagatgatacagtgctgcttctgtgaggactggttccatgaggaacatattggtcttgattcctctgatgagattccaagagatggagaaggtgaacctctatatgaggattttatatgcgcagcatgctcaaaagtgtgctcctttctaagactatatactcgaatcatcttggaagcaaggagccaaaacaattcttctgttaagactggaaaagataaagaagttatagcagatgaagtacctttagcttgtggatctggaaagctagaaaatattcctcagagttctactaccaactctgaatctgtatctggaggggaagtttcacttggagaaaattctgggaagaatatatgttcagagcaatgtgctacagatgctgatacacgtcctacttgcgctattggagttgatctggcagttgcttcccctgtttcagagagtaagccaatgtttctttcaaaaaactggcggaatgctctttgcaggtgtgaaaagtgcagtgaattttataaacagaagcatattaattttctaattgacaaggaggactcaatcattgagtatgagaaaatggcaaagcagaagagagaagaaaagttgcagcaacgtgagggggcagagttaagtatgctggataaccttggccatgtagagaaaattgagattctgaatggtattgcagatatcaaagatgagctttgttctttcctgggatcatttgatccatcgaaagcaatcacatctgctgatgtccaccagatttttgagaatctaaagaaacgcaggcgtgtagagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-UBR

Protein Analysis

445

Amino Acids

49.87

Weight (kDa)

4.78

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23860 AT4G23860 AT4G23860 AT4G23860
fragaria_vesca	FvH4_5g04600 FvH4_5g04600 FvH4_5g04600
malus_domestica	MD06G1107100.v1.1 MD14G1128900.v1.1
prunus_persica	Prupe.5G120100_v2.0.a1 Prupe.5G120100_v2.0.a1
pyrus_communis	pycom06g10120
rosa_chinensis	RchiOBHm_Chr7g0194791
rosa_laevigata	RLG00000004169
rosa_multiflora	Rmu_sc0004722.1_g000002 Rmu_sc0007833.1_g000007
rosa_roxburghii	Rroxscaffold_3G00235070 Rroxscaffold_3G00260980 Rroxscaffold_6G00410890
rosa_rugosa	Rorug07G0018400.1
rosa_samantha	Rh7AG146100 Rh7BG146000 Rh7CG150000 Rh7DG147400
rosa_wichuraiana	Rw4G009500 Rw7G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1050
AarI	CACCTGC	1 cut(s)	1014
Acc16I	TGCGCA	1 cut(s)	655
Acc36I	ACCTGC	1 cut(s)	1014
AccB7I	CCANNNNNTGG	2 cut(s)	184, 617
AccII	CGCG	1 cut(s)	116
AciI	CCGC	4 cut(s)	52, 116, 499, 1009
AclWI	GGATC	4 cut(s)	506, 799, 1256, 1261
AcoI	YGGCCR	3 cut(s)	337, 496, 1183
AcsI	RAATTY	4 cut(s)	391, 398, 874, 1043
AcuI	CTGAAG	2 cut(s)	182, 358
AfaI	GTAC	4 cut(s)	229, 245, 490, 777
AfiI	CCNNNNNNNGG	2 cut(s)	184, 617
AflIII	ACRYGT	1 cut(s)	923
AgsI	TTSAA	4 cut(s)	396, 443, 475, 999
AjiI	CACGTC	2 cut(s)	520, 926
AjnI	CCWGG	2 cut(s)	177, 1248
AjuI	GAANNNNNNNTTGG	6 cut(s)	356, 388, 849, 881, 979, 1011
AleI	CACNNNNGTG	1 cut(s)	132
AloI	GAACNNNNNNTCC	2 cut(s)	95, 127
AluBI	AGCT	7 cut(s)	79, 191, 314, 321, 785, 802, 1237
AluI	AGCT	7 cut(s)	79, 191, 314, 321, 785, 802, 1237
Alw21I	GWGCWC	1 cut(s)	677
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	4 cut(s)	506, 799, 1256, 1261
AlwNI	CAGNNNCTG	2 cut(s)	184, 917
AoxI	GGCC	4 cut(s)	124, 337, 496, 1183
ApeKI	GCWGC	4 cut(s)	318, 549, 656, 1141
ApoI	RAATTY	4 cut(s)	391, 398, 874, 1043
ArsI	GACNNNNNNTTYG	2 cut(s)	95, 127
AseI	ATTAAT	1 cut(s)	1065
Asp700I	GAANNNNTTC	1 cut(s)	810
AspLEI	GCGC	3 cut(s)	73, 656, 938
AspS9I	GGNCC	4 cut(s)	103, 124, 175, 360
AsuHPI	GGTGA	4 cut(s)	106, 146, 416, 638
AvaII	GGWCC	3 cut(s)	103, 175, 360
BalI	TGGCCA	2 cut(s)	339, 1185
Bbv12I	GWGCWC	1 cut(s)	677
BbvI	GCAGC	4 cut(s)	330, 536, 668, 1153
BccI	CCATC	5 cut(s)	94, 284, 329, 611, 1273
BciT130I	CCWGG	2 cut(s)	179, 1250
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	1 cut(s)	803
BfmI	CTRYAG	1 cut(s)	909
BfuAI	ACCTGC	1 cut(s)	1014
BisI	GCNGC	5 cut(s)	319, 499, 550, 657, 1142
BlsI	GCNGC	5 cut(s)	320, 500, 551, 658, 1143
Bme1390I	CCNGG	2 cut(s)	179, 1250
Bme18I	GGWCC	3 cut(s)	103, 175, 360
BmgBI	CACGTC	2 cut(s)	520, 926
BmgT120I	GGNCC	4 cut(s)	103, 124, 175, 360
BmiI	GGNNCC	4 cut(s)	105, 481, 569, 719
BmrFI	CCNGG	2 cut(s)	179, 1250
BmsI	GCATC	2 cut(s)	17, 904
BoxI	GACNNNNGTC	1 cut(s)	27
BpmI	CTGGAG	2 cut(s)	321, 870
BsaI	GGTCTC	1 cut(s)	131
BsaJI	CCNNGG	2 cut(s)	1180, 1249
BsaXI	ACNNNNNCTCC	2 cut(s)	843, 873
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 617
Bse1I	ACTGG	4 cut(s)	189, 569, 748, 1010
Bse3DI	GCAATG	1 cut(s)	908
BseBI	CCWGG	2 cut(s)	179, 1250
BseDI	CCNNGG	2 cut(s)	1180, 1249
BseGI	GGATG	2 cut(s)	124, 172
BseLI	CCNNNNNNNGG	2 cut(s)	184, 617
BseMI	GCAATG	1 cut(s)	908
BseMII	CTCAG	1 cut(s)	830
BseNI	ACTGG	4 cut(s)	189, 569, 748, 1010
BseXI	GCAGC	4 cut(s)	330, 536, 668, 1153
BsgI	GTGCAG	1 cut(s)	1057
Bsh1236I	CGCG	1 cut(s)	116
BshFI	GGCC	4 cut(s)	126, 339, 498, 1185
BsiHKAI	GWGCWC	1 cut(s)	677
BslI	CCNNNNNNNGG	2 cut(s)	184, 617
BsmAI	GTCTC	1 cut(s)	131
BsmI	GAATGC	1 cut(s)	1018
BsnI	GGCC	4 cut(s)	126, 339, 498, 1185
Bso31I	GGTCTC	1 cut(s)	131
Bsp1286I	GDGCHC	1 cut(s)	677
Bsp143I	GATC	5 cut(s)	511, 791, 949, 1253, 1261
BspACI	CCGC	4 cut(s)	52, 116, 499, 1009
BspANI	GGCC	4 cut(s)	126, 339, 498, 1185
BspCNI	CTCAG	1 cut(s)	829
BspFNI	CGCG	1 cut(s)	116
BspHI	TCATGA	1 cut(s)	331
BspLI	GGNNCC	4 cut(s)	105, 481, 569, 719
BspMI	ACCTGC	1 cut(s)	1014
BspPI	GGATC	4 cut(s)	506, 799, 1256, 1261
BspTNI	GGTCTC	1 cut(s)	131
BsrDI	GCAATG	1 cut(s)	908
BsrI	ACTGG	4 cut(s)	189, 569, 748, 1010
BssECI	CCNNGG	2 cut(s)	1180, 1249
BssMI	GATC	5 cut(s)	511, 791, 949, 1253, 1261
BssT1I	CCWWGG	1 cut(s)	1180
Bst2UI	CCWGG	2 cut(s)	179, 1250
Bst4CI	ACNGT	5 cut(s)	29, 134, 142, 488, 546
Bst6I	CTCTTC	3 cut(s)	147, 245, 1118
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstC8I	GCNNGC	4 cut(s)	258, 316, 661, 1325
BstDEI	CTNAG	2 cut(s)	683, 816
BstF5I	GGATG	2 cut(s)	124, 172
BstFNI	CGCG	1 cut(s)	116
BstHHI	GCGC	3 cut(s)	73, 656, 938
BstKTI	GATC	5 cut(s)	514, 794, 952, 1256, 1264
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	5 cut(s)	511, 791, 949, 1253, 1261
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 279, 315, 660, 914
BstNI	CCWGG	2 cut(s)	179, 1250
BstNSI	RCATGY	1 cut(s)	663
BstPAI	GACNNNNGTC	1 cut(s)	27
BstSCI	CCNGG	2 cut(s)	177, 1248
BstSFI	CTRYAG	1 cut(s)	909
BstUI	CGCG	1 cut(s)	116
BstV1I	GCAGC	4 cut(s)	330, 536, 668, 1153
BstX2I	RGATCY	1 cut(s)	791
BstYI	RGATCY	1 cut(s)	791
BsuRI	GGCC	4 cut(s)	126, 339, 498, 1185
BtgZI	GCGATG	1 cut(s)	225
BtrI	CACGTC	2 cut(s)	520, 926
BtsCI	GGATG	2 cut(s)	124, 172
BtsI	GCAGTG	1 cut(s)	1045
BtsIMutI	CAGTG	2 cut(s)	551, 1045
BveI	ACCTGC	1 cut(s)	1014
Cac8I	GCNNGC	4 cut(s)	258, 316, 661, 1325
CaiI	CAGNNNCTG	2 cut(s)	184, 917
CciI	TCATGA	1 cut(s)	331
CfoI	GCGC	3 cut(s)	73, 656, 938
Cfr13I	GGNCC	4 cut(s)	103, 124, 175, 360
Csp6I	GTAC	4 cut(s)	228, 244, 489, 776
CviAII	CATG	7 cut(s)	247, 270, 332, 341, 572, 660, 1187
CviQI	GTAC	4 cut(s)	228, 244, 489, 776
DdeI	CTNAG	2 cut(s)	683, 816
DpnI	GATC	5 cut(s)	513, 793, 951, 1255, 1263
DpnII	GATC	5 cut(s)	511, 791, 949, 1253, 1261
EaeI	YGGCCR	3 cut(s)	337, 496, 1183
Eam1104I	CTCTTC	3 cut(s)	147, 245, 1118
EarI	CTCTTC	3 cut(s)	147, 245, 1118
EciI	GGCGGA	1 cut(s)	1024
Eco130I	CCWWGG	1 cut(s)	1180
Eco31I	GGTCTC	1 cut(s)	131
Eco32I	GATATC	1 cut(s)	1225
Eco47I	GGWCC	3 cut(s)	103, 175, 360
Eco57I	CTGAAG	2 cut(s)	182, 358
EcoRII	CCWGG	2 cut(s)	177, 1248
EcoRV	GATATC	1 cut(s)	1225
EcoT14I	CCWWGG	1 cut(s)	1180
ErhI	CCWWGG	1 cut(s)	1180
FaeI	CATG	7 cut(s)	250, 273, 335, 344, 575, 663, 1190
FalI	AAGNNNNNCTT	6 cut(s)	356, 388, 849, 881, 1221, 1253
FatI	CATG	7 cut(s)	246, 269, 331, 340, 571, 659, 1186
Fnu4HI	GCNGC	5 cut(s)	319, 499, 550, 657, 1142
FokI	GGATG	2 cut(s)	131, 179
Fsp4HI	GCNGC	5 cut(s)	319, 499, 550, 657, 1142
FspBI	CTAG	1 cut(s)	803
FspI	TGCGCA	1 cut(s)	655
GlaI	GCGC	3 cut(s)	72, 655, 937
GluI	GCNGC	5 cut(s)	319, 499, 550, 657, 1142
GsuI	CTGGAG	2 cut(s)	321, 870
HaeIII	GGCC	4 cut(s)	126, 339, 498, 1185
HhaI	GCGC	3 cut(s)	73, 656, 938
Hin1II	CATG	7 cut(s)	250, 273, 335, 344, 575, 663, 1190
Hin6I	GCGC	3 cut(s)	71, 654, 936
HinP1I	GCGC	3 cut(s)	71, 654, 936
HinfI	GANTC	7 cut(s)	593, 607, 699, 839, 1088, 1204, 1309
HphI	GGTGA	4 cut(s)	106, 146, 416, 638
Hpy166II	GTNNAC	3 cut(s)	228, 629, 1294
Hpy188I	TCNGA	9 cut(s)	43, 162, 377, 601, 819, 838, 898, 976, 1209
Hpy188III	TCNNGA	6 cut(s)	332, 509, 515, 590, 795, 849
Hpy8I	GTNNAC	3 cut(s)	228, 629, 1294
Hpy99I	CGWCG	2 cut(s)	63, 134
HpyAV	CCTTC	3 cut(s)	157, 209, 617
HpyCH4III	ACNGT	5 cut(s)	29, 134, 142, 488, 546
HpyCH4IV	ACGT	3 cut(s)	519, 925, 1147
HpyCH4V	TGCA	9 cut(s)	8, 282, 309, 318, 417, 1023, 1038, 1141, 1220
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 279, 315, 660, 914
HpyF3I	CTNAG	2 cut(s)	683, 816
HpySE526I	ACGT	3 cut(s)	519, 925, 1147
Hsp92II	CATG	7 cut(s)	250, 273, 335, 344, 575, 663, 1190
HspAI	GCGC	3 cut(s)	71, 654, 936
Kzo9I	GATC	5 cut(s)	511, 791, 949, 1253, 1261
LmnI	GCTCC	2 cut(s)	680, 717
Lsp1109I	GCAGC	4 cut(s)	330, 536, 668, 1153
LweI	GCATC	2 cut(s)	17, 904
MaeI	CTAG	1 cut(s)	803
MaeII	ACGT	3 cut(s)	519, 925, 1147
MaeIII	GTNAC	1 cut(s)	142
MalI	GATC	5 cut(s)	513, 793, 951, 1255, 1263
MboI	GATC	5 cut(s)	511, 791, 949, 1253, 1261
MboII	GAAGA	8 cut(s)	109, 164, 262, 536, 723, 895, 1135, 1142
MflI	RGATCY	1 cut(s)	791
MhlI	GDGCHC	1 cut(s)	677
MlsI	TGGCCA	2 cut(s)	339, 1185
MluCI	AATT	9 cut(s)	261, 391, 398, 727, 874, 1043, 1066, 1074, 1197
MluNI	TGGCCA	2 cut(s)	339, 1185
MlyI	GAGTC	1 cut(s)	1082
Mox20I	TGGCCA	2 cut(s)	339, 1185
MroXI	GAANNNNTTC	1 cut(s)	810
MscI	TGGCCA	2 cut(s)	339, 1185
MseI	TTAA	3 cut(s)	738, 1065, 1163
MslI	CAYNNNNRTG	1 cut(s)	132
Msp20I	TGGCCA	2 cut(s)	339, 1185
MspR9I	CCNGG	2 cut(s)	179, 1250
Mva1269I	GAATGC	1 cut(s)	1018
MvaI	CCWGG	2 cut(s)	179, 1250
MvnI	CGCG	1 cut(s)	116
MwoI	GCNNNNNNNGC	5 cut(s)	216, 279, 315, 660, 914
NdeII	GATC	5 cut(s)	511, 791, 949, 1253, 1261
NlaIII	CATG	7 cut(s)	250, 273, 335, 344, 575, 663, 1190
NlaIV	GGNNCC	4 cut(s)	105, 481, 569, 719
NmuCI	GTSAC	1 cut(s)	142
NsbI	TGCGCA	1 cut(s)	655
NspI	RCATGY	1 cut(s)	663
OliI	CACNNNNGTG	1 cut(s)	132
PaeI	GCATGC	1 cut(s)	663
PagI	TCATGA	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	1014
PcsI	WCGNNNNNNNCGW	1 cut(s)	138
PctI	GAATGC	1 cut(s)	1018
PdmI	GAANNNNTTC	1 cut(s)	810
PfeI	GAWTC	6 cut(s)	593, 607, 699, 839, 1204, 1309
PflMI	CCANNNNNTGG	2 cut(s)	184, 617
PkrI	GCNGC	5 cut(s)	320, 500, 551, 658, 1143
PleI	GAGTC	1 cut(s)	1082
PpsI	GAGTC	1 cut(s)	1082
PshAI	GACNNNNGTC	1 cut(s)	27
PshBI	ATTAAT	1 cut(s)	1065
PsiI	TTATAA	1 cut(s)	1050
Psp6I	CCWGG	2 cut(s)	177, 1248
PspGI	CCWGG	2 cut(s)	177, 1248
PspN4I	GGNNCC	4 cut(s)	105, 481, 569, 719
PspPI	GGNCC	4 cut(s)	103, 124, 175, 360
PstNI	CAGNNNCTG	2 cut(s)	184, 917
PsuI	RGATCY	1 cut(s)	791
RsaI	GTAC	4 cut(s)	229, 245, 490, 777
RsaNI	GTAC	4 cut(s)	228, 244, 489, 776
RseI	CAYNNNNRTG	1 cut(s)	132
SaqAI	TTAA	3 cut(s)	738, 1065, 1163
SatI	GCNGC	5 cut(s)	319, 499, 550, 657, 1142
Sau3AI	GATC	5 cut(s)	511, 791, 949, 1253, 1261
Sau96I	GGNCC	4 cut(s)	103, 124, 175, 360
SchI	GAGTC	1 cut(s)	1082
ScrFI	CCNGG	2 cut(s)	179, 1250
SduI	GDGCHC	1 cut(s)	677
SfaNI	GCATC	2 cut(s)	17, 904
SfcI	CTRYAG	1 cut(s)	909
SinI	GGWCC	3 cut(s)	103, 175, 360
SmiMI	CAYNNNNRTG	1 cut(s)	132
SphI	GCATGC	1 cut(s)	663
Sse9I	AATT	9 cut(s)	261, 391, 398, 727, 874, 1043, 1066, 1074, 1197
SsiI	CCGC	4 cut(s)	52, 116, 499, 1009
SspI	AATATT	1 cut(s)	811
SspMI	CTAG	1 cut(s)	803
StyD4I	CCNGG	2 cut(s)	177, 1248
StyI	CCWWGG	1 cut(s)	1180
TaaI	ACNGT	5 cut(s)	29, 134, 142, 488, 546
TaiI	ACGT	3 cut(s)	522, 928, 1150
TaqI	TCGA	3 cut(s)	150, 697, 1268
TasI	AATT	9 cut(s)	261, 391, 398, 727, 874, 1043, 1066, 1074, 1197
TauI	GCSGC	1 cut(s)	501
TfiI	GAWTC	6 cut(s)	593, 607, 699, 839, 1204, 1309
Tru1I	TTAA	3 cut(s)	738, 1065, 1163
Tru9I	TTAA	3 cut(s)	738, 1065, 1163
TscAI	CASTG	2 cut(s)	551, 1045
TseFI	GTSAC	1 cut(s)	142
TseI	GCWGC	4 cut(s)	318, 549, 656, 1141
Tsp45I	GTSAC	1 cut(s)	142
TspDTI	ATGAA	3 cut(s)	228, 263, 786
TspRI	CASTG	2 cut(s)	551, 1045
Van91I	CCANNNNNTGG	2 cut(s)	184, 617
VpaK11BI	GGWCC	3 cut(s)	103, 175, 360
VspI	ATTAAT	1 cut(s)	1065
XapI	RAATTY	4 cut(s)	391, 398, 874, 1043
XceI	RCATGY	1 cut(s)	663
XmnI	GAANNNNTTC	1 cut(s)	810
XspI	CTAG	1 cut(s)	803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.