Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0006747

Physical Location & Seq

Genomic Coordinates Reverse (-)

21796861 .. 21804204

Gene Structure 7344 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00235070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGCCATGAGATTGTGGAACTATGGACCAAGAGAAACTTCAAGGGATTGTGGAAATTCAAAATTTGGTGAGTTCTACTGCAAGATTTTCCCAAGTAAAGATATCGAAAATGTTGACAACTCCTACAATCATAACTTCAAAGGTTCCTACGTACCGTGGCTGCCCCTATCCCGATCCGGATGTGGAAGAACAAGTAGAGATGATACGGTCGCTTTCGTGAGGACTAGTTCCATGAGGAACATATTGGTCTTGATTCCTCGACGAGATTCCAAGAGATGGAGAAGAATTATTTTAGGAAGAGTAAGTAGTTGTCTAACATCTAAGGATTTGATGGTTATTGAATGGTTGGTTTTGACGAACTTTGCTTGTCTTGTCATGATGGCCATGAGATTGTGGAACTATAGACCAAGAGAAACTTCAGGTGATTGTGGAAATTCAAAATTTGGTGAGTTCTACTGCAAGATTTTCCCAAGTAAAGATATCGAAAATGTTGACAACTCCTACAATCATAACTTCAAAGGTTCCTACCGTACCCGTGGCCGCCCCTATCCCGATCCGTATGTGGAAGAACAAGTAGAGATGATACAGGTCTGCTTCGTGAGGAATGGTTCCATGAGGAACATATTGGTCTTGATTCCTCCGACGAGATTCCAAGAGATGGAGAAGGTGAACCTCTATATGAGGATTTTATATGCGCAGCATGCTCAAAAGTTTGCTCCTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-UBR

Protein Analysis

241

Amino Acids

28.35

Weight (kDa)

9.51

Isoelectric Point (pI)

52.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23860 AT4G23860 AT4G23860 AT4G23860
fragaria_vesca	FvH4_5g04600 FvH4_5g04600 FvH4_5g04600
malus_domestica	MD06G1107100.v1.1 MD14G1128900.v1.1
prunus_persica	Prupe.5G120100_v2.0.a1 Prupe.5G120100_v2.0.a1
pyrus_communis	pycom06g10120
rosa_chinensis	RchiOBHm_Chr7g0194791
rosa_laevigata	RLG00000004169
rosa_multiflora	Rmu_sc0004722.1_g000002 Rmu_sc0007833.1_g000007
rosa_roxburghii	Rroxscaffold_3G00235070 Rroxscaffold_3G00260980 Rroxscaffold_6G00410890
rosa_rugosa	Rorug07G0018400.1
rosa_samantha	Rh7AG146100 Rh7BG146000 Rh7CG150000 Rh7DG147400
rosa_wichuraiana	Rw4G009500 Rw7G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	696
AccB7I	CCANNNNNTGG	2 cut(s)	276, 658
AccIII	TCCGGA	1 cut(s)	176
AciI	CCGC	1 cut(s)	541
AclWI	GGATC	2 cut(s)	168, 548
AcoI	YGGCCR	3 cut(s)	3, 381, 538
AcsI	RAATTY	4 cut(s)	55, 62, 433, 440
AcuI	CTGAAG	1 cut(s)	402
AfaI	GTAC	2 cut(s)	153, 532
AfiI	CCNNNNNNNGG	2 cut(s)	276, 658
AgsI	TTSAA	6 cut(s)	42, 60, 139, 341, 438, 517
AhlI	ACTAGT	1 cut(s)	224
AjuI	GAANNNNNNNTTGG	4 cut(s)	22, 54, 400, 432
AlwI	GGATC	2 cut(s)	168, 548
Aor13HI	TCCGGA	1 cut(s)	176
AoxI	GGCC	3 cut(s)	3, 381, 538
ApeKI	GCWGC	2 cut(s)	160, 697
ApoI	RAATTY	4 cut(s)	55, 62, 433, 440
AspLEI	GCGC	1 cut(s)	697
AspS9I	GGNCC	1 cut(s)	26
AsuHPI	GGTGA	4 cut(s)	80, 434, 458, 679
AvaII	GGWCC	1 cut(s)	26
BalI	TGGCCA	2 cut(s)	5, 383
BbvI	GCAGC	2 cut(s)	147, 709
BccI	CCATC	4 cut(s)	270, 325, 373, 652
BcuI	ACTAGT	1 cut(s)	224
BfaI	CTAG	1 cut(s)	225
BfmI	CTRYAG	1 cut(s)	400
BisI	GCNGC	3 cut(s)	161, 541, 698
BlsI	GCNGC	3 cut(s)	162, 542, 699
Bme18I	GGWCC	1 cut(s)	26
BmgT120I	GGNCC	1 cut(s)	26
BmiI	GGNNCC	3 cut(s)	145, 523, 610
BsaAI	YACGTR	1 cut(s)	151
BsaJI	CCNNGG	2 cut(s)	155, 535
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	276, 658
BseAI	TCCGGA	1 cut(s)	176
BseDI	CCNNGG	2 cut(s)	155, 535
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	276, 658
BseXI	GCAGC	2 cut(s)	147, 709
Bsh1285I	CGRYCG	1 cut(s)	210
BshFI	GGCC	3 cut(s)	5, 383, 540
BsiEI	CGRYCG	1 cut(s)	210
BsiSI	CCGG	1 cut(s)	177
BslI	CCNNNNNNNGG	2 cut(s)	276, 658
BsnI	GGCC	3 cut(s)	5, 383, 540
Bsp13I	TCCGGA	1 cut(s)	176
Bsp143I	GATC	2 cut(s)	173, 553
BspACI	CCGC	1 cut(s)	541
BspANI	GGCC	3 cut(s)	5, 383, 540
BspEI	TCCGGA	1 cut(s)	176
BspHI	TCATGA	1 cut(s)	375
BspLI	GGNNCC	3 cut(s)	145, 523, 610
BspPI	GGATC	2 cut(s)	168, 548
BssECI	CCNNGG	2 cut(s)	155, 535
BssMI	GATC	2 cut(s)	173, 553
Bst4CI	ACNGT	3 cut(s)	156, 208, 530
Bst6I	CTCTTC	1 cut(s)	292
BstBAI	YACGTR	1 cut(s)	151
BstC8I	GCNNGC	1 cut(s)	702
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	2 cut(s)	155, 535
BstF5I	GGATG	1 cut(s)	185
BstHHI	GCGC	1 cut(s)	697
BstKTI	GATC	2 cut(s)	176, 556
BstMBI	GATC	2 cut(s)	173, 553
BstMCI	CGRYCG	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNSI	RCATGY	1 cut(s)	704
BstSFI	CTRYAG	1 cut(s)	400
BstSNI	TACGTA	1 cut(s)	151
BstV1I	GCAGC	2 cut(s)	147, 709
BsuRI	GGCC	3 cut(s)	5, 383, 540
BtgI	CCRYGG	2 cut(s)	155, 535
BtsCI	GGATG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	702
CciI	TCATGA	1 cut(s)	375
CfoI	GCGC	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	26
Csp6I	GTAC	2 cut(s)	152, 531
CviAII	CATG	6 cut(s)	7, 232, 376, 385, 613, 701
CviJI	RGCY	4 cut(s)	5, 160, 383, 540
CviKI_1	RGCY	4 cut(s)	5, 160, 383, 540
CviQI	GTAC	2 cut(s)	152, 531
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	2 cut(s)	175, 555
DpnII	GATC	2 cut(s)	173, 553
EaeI	YGGCCR	3 cut(s)	3, 381, 538
Eam1104I	CTCTTC	1 cut(s)	292
EarI	CTCTTC	1 cut(s)	292
Eco105I	TACGTA	1 cut(s)	151
Eco32I	GATATC	2 cut(s)	103, 481
Eco47I	GGWCC	1 cut(s)	26
Eco57I	CTGAAG	1 cut(s)	402
EcoRV	GATATC	2 cut(s)	103, 481
FaeI	CATG	6 cut(s)	10, 235, 379, 388, 616, 704
FalI	AAGNNNNNCTT	4 cut(s)	22, 54, 400, 432
FatI	CATG	6 cut(s)	6, 231, 375, 384, 612, 700
Fnu4HI	GCNGC	3 cut(s)	161, 541, 698
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	3 cut(s)	161, 541, 698
FspBI	CTAG	1 cut(s)	225
FspI	TGCGCA	1 cut(s)	696
GlaI	GCGC	1 cut(s)	696
GluI	GCNGC	3 cut(s)	161, 541, 698
HaeIII	GGCC	3 cut(s)	5, 383, 540
HapII	CCGG	1 cut(s)	177
HhaI	GCGC	1 cut(s)	697
Hin1II	CATG	6 cut(s)	10, 235, 379, 388, 616, 704
Hin6I	GCGC	1 cut(s)	695
HinP1I	GCGC	1 cut(s)	695
HincII	GTYRAC	2 cut(s)	115, 493
HindII	GTYRAC	2 cut(s)	115, 493
HinfI	GANTC	4 cut(s)	253, 266, 634, 648
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	4 cut(s)	80, 434, 458, 679
Hpy166II	GTNNAC	3 cut(s)	115, 493, 670
Hpy188I	TCNGA	1 cut(s)	642
Hpy188III	TCNNGA	8 cut(s)	171, 177, 217, 250, 376, 551, 598, 631
Hpy8I	GTNNAC	3 cut(s)	115, 493, 670
Hpy99I	CGWCG	2 cut(s)	264, 646
HpyAV	CCTTC	1 cut(s)	658
HpyCH4III	ACNGT	3 cut(s)	156, 208, 530
HpyCH4IV	ACGT	1 cut(s)	150
HpyCH4V	TGCA	2 cut(s)	81, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	150
Hsp92II	CATG	6 cut(s)	10, 235, 379, 388, 616, 704
HspAI	GCGC	1 cut(s)	695
Kpn2I	TCCGGA	1 cut(s)	176
Kzo9I	GATC	2 cut(s)	173, 553
LmnI	GCTCC	1 cut(s)	721
LpnPI	CCDG	3 cut(s)	190, 405, 572
Lsp1109I	GCAGC	2 cut(s)	147, 709
MaeI	CTAG	1 cut(s)	225
MaeII	ACGT	1 cut(s)	150
MalI	GATC	2 cut(s)	175, 555
MboI	GATC	2 cut(s)	173, 553
MboII	GAAGA	4 cut(s)	198, 294, 309, 578
MlsI	TGGCCA	2 cut(s)	5, 383
MluCI	AATT	5 cut(s)	55, 62, 285, 433, 440
MluNI	TGGCCA	2 cut(s)	5, 383
MmeI	TCCRAC	1 cut(s)	665
MnlI	CCTC	8 cut(s)	213, 228, 267, 594, 609, 648, 675, 683
Mox20I	TGGCCA	2 cut(s)	5, 383
MroI	TCCGGA	1 cut(s)	176
MscI	TGGCCA	2 cut(s)	5, 383
Msp20I	TGGCCA	2 cut(s)	5, 383
MspI	CCGG	1 cut(s)	177
MwoI	GCNNNNNNNGC	1 cut(s)	701
NdeII	GATC	2 cut(s)	173, 553
NlaIII	CATG	6 cut(s)	10, 235, 379, 388, 616, 704
NlaIV	GGNNCC	3 cut(s)	145, 523, 610
NsbI	TGCGCA	1 cut(s)	696
NspI	RCATGY	1 cut(s)	704
PaeI	GCATGC	1 cut(s)	704
PagI	TCATGA	1 cut(s)	375
PfeI	GAWTC	4 cut(s)	253, 266, 634, 648
PflMI	CCANNNNNTGG	2 cut(s)	276, 658
PkrI	GCNGC	3 cut(s)	162, 542, 699
Ppu21I	YACGTR	1 cut(s)	151
PspN4I	GGNNCC	3 cut(s)	145, 523, 610
PspPI	GGNCC	1 cut(s)	26
RsaI	GTAC	2 cut(s)	153, 532
RsaNI	GTAC	2 cut(s)	152, 531
SatI	GCNGC	3 cut(s)	161, 541, 698
Sau3AI	GATC	2 cut(s)	173, 553
Sau96I	GGNCC	1 cut(s)	26
SetI	ASST	7 cut(s)	145, 153, 424, 523, 591, 669, 675
SfcI	CTRYAG	1 cut(s)	400
SinI	GGWCC	1 cut(s)	26
SnaBI	TACGTA	1 cut(s)	151
SpeI	ACTAGT	1 cut(s)	224
SphI	GCATGC	1 cut(s)	704
Sse9I	AATT	5 cut(s)	55, 62, 285, 433, 440
SsiI	CCGC	1 cut(s)	541
SspMI	CTAG	1 cut(s)	225
TaaI	ACNGT	3 cut(s)	156, 208, 530
TaiI	ACGT	1 cut(s)	153
TaqI	TCGA	3 cut(s)	105, 259, 483
TasI	AATT	5 cut(s)	55, 62, 285, 433, 440
TauI	GCSGC	1 cut(s)	543
TfiI	GAWTC	4 cut(s)	253, 266, 634, 648
TseI	GCWGC	2 cut(s)	160, 697
TspGWI	ACGGA	1 cut(s)	546
Van91I	CCANNNNNTGG	2 cut(s)	276, 658
VpaK11BI	GGWCC	1 cut(s)	26
XapI	RAATTY	4 cut(s)	55, 62, 433, 440
XceI	RCATGY	1 cut(s)	704
XspI	CTAG	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.