Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0006747

Physical Location & Seq

Genomic Coordinates Reverse (-)

10816211 .. 10820706

Gene Structure 4496 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG146000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGTTGCGGGAAGGAGAATGCTGGTATCTGTTTCCTTTTGGGAACTGCTATTTCTGGTTCATTATATTTATACGTACCGACTTAAATGGATATATCTTGATGTATCCTATTACTAATGGTGGTTATTATTGTTACTTGGACAAGATTGTGGAACTATGGACCAAGAGAAACTTCAGATGTGATTGTGGAAATTCAAAATTTGGTGAGTTCTACTGCAAGATTTTCCCAAGTAAAGATATCGAAAATGTTGAGAACTCCTACAATCATAACTTCAAAGGTTCCTACTGTACCTGTGGCCGCCCCTATCCTGATCCAGACGTGGAAGAACAAGTAGAGATGATACAGTGCTGCTTCTGTGAGGACTGGTTCCATGAGGAACATATTGGTCTTGATTCCTCTGATGAGATTCCAAGAGATGGAGAAGGTGAACCTCTATATGAGGATTTTATATGCGCAGCATGCTCAAAAGTTTGCTCCTTTCTAAGACTATATACTCGAATCATCTTGGAAGCAAGGAGCCAAAACAATTCTTCTGTTAAGACTGGAAAAGATAAAGAAGTTATAGCAGATGAAGTACTTTTAGCTTGTGGATCTGGAAAGCTAGAAAATATTCCTCAGAGTTCTACTACCAACTCTGAATCTGTGTCTGGAGGGGAAGTTTCACTTGGAGAAAATTCTGGGAAGAATATATGTTCAGAGCAATGTGCTACAGATGCTGATACACGTCCTACTTGCGCTATTGGAGTTGATCTGGCAGTTGCTTCCCCTGTTTCAGAGAGTAAGCCAATGTTTCTTTCAAAAAACTGGCGGAATGCTCTTTGCAGGTGTGAAAAGTGCAGTGAATTTTATAAACAGAAGCATATTAGTTTTCTAATTGACAAGGAGGACTCAATCATTGAGTATGAGAAAATGGCAAAGCAGAAGAGAGAAGAAAAGTTGCAGCAACGTGAGGGGGCAGAGTTAAGTATGCTGGATAACCTTGGCCATGTAGAGAAAATTGAGATTCTGAATGGTATTGCAGATATCAAAGATGAGCTTTGTTCTTTCCTGGGATCATTTGATCCATCGAAAGCAATCACATCTGCTGATGTCCACCAGATTTTTGAGAATCTAAAGAAACGCAGGCGTGTAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-UBR

Protein Analysis

378

Amino Acids

43.16

Weight (kDa)

4.94

Isoelectric Point (pI)

47.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G23860 AT4G23860 AT4G23860 AT4G23860
fragaria_vesca	FvH4_5g04600 FvH4_5g04600 FvH4_5g04600
malus_domestica	MD06G1107100.v1.1 MD14G1128900.v1.1
prunus_persica	Prupe.5G120100_v2.0.a1 Prupe.5G120100_v2.0.a1
pyrus_communis	pycom06g10120
rosa_chinensis	RchiOBHm_Chr7g0194791
rosa_laevigata	RLG00000004169
rosa_multiflora	Rmu_sc0004722.1_g000002 Rmu_sc0007833.1_g000007
rosa_roxburghii	Rroxscaffold_3G00235070 Rroxscaffold_3G00260980 Rroxscaffold_6G00410890
rosa_rugosa	Rorug07G0018400.1
rosa_samantha	Rh7AG146100 Rh7BG146000 Rh7CG150000 Rh7DG147400
rosa_wichuraiana	Rw4G009500 Rw7G012470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	849
AarI	CACCTGC	1 cut(s)	813
Acc16I	TGCGCA	1 cut(s)	454
Acc36I	ACCTGC	1 cut(s)	813
AccB7I	CCANNNNNTGG	1 cut(s)	416
AciI	CCGC	3 cut(s)	7, 298, 808
AclWI	GGATC	4 cut(s)	305, 598, 1055, 1060
AcoI	YGGCCR	2 cut(s)	295, 982
AcsI	RAATTY	4 cut(s)	190, 197, 673, 842
AcuI	CTGAAG	1 cut(s)	157
AfaI	GTAC	3 cut(s)	76, 289, 576
AfiI	CCNNNNNNNGG	1 cut(s)	416
AflIII	ACRYGT	1 cut(s)	722
AgsI	TTSAA	3 cut(s)	195, 274, 798
AjiI	CACGTC	2 cut(s)	319, 725
AjnI	CCWGG	1 cut(s)	1047
AjuI	GAANNNNNNNTTGG	6 cut(s)	155, 187, 648, 680, 778, 810
AluBI	AGCT	3 cut(s)	584, 601, 1036
AluI	AGCT	3 cut(s)	584, 601, 1036
AlwI	GGATC	4 cut(s)	305, 598, 1055, 1060
AlwNI	CAGNNNCTG	1 cut(s)	716
AoxI	GGCC	2 cut(s)	295, 982
ApeKI	GCWGC	3 cut(s)	348, 455, 940
ApoI	RAATTY	4 cut(s)	190, 197, 673, 842
Asp700I	GAANNNNTTC	1 cut(s)	609
AspLEI	GCGC	2 cut(s)	455, 737
AspS9I	GGNCC	1 cut(s)	159
AsuHPI	GGTGA	2 cut(s)	215, 437
AvaII	GGWCC	1 cut(s)	159
BalI	TGGCCA	1 cut(s)	984
BbvI	GCAGC	3 cut(s)	335, 467, 952
BccI	CCATC	2 cut(s)	410, 1072
BciT130I	CCWGG	1 cut(s)	1049
BciVI	GTATCC	1 cut(s)	114
BfaI	CTAG	1 cut(s)	602
BfmI	CTRYAG	1 cut(s)	708
BfuAI	ACCTGC	1 cut(s)	813
BfuI	GTATCC	1 cut(s)	114
BisI	GCNGC	4 cut(s)	298, 349, 456, 941
BlsI	GCNGC	4 cut(s)	299, 350, 457, 942
BmcAI	AGTACT	1 cut(s)	576
Bme1390I	CCNGG	1 cut(s)	1049
Bme18I	GGWCC	1 cut(s)	159
BmgBI	CACGTC	2 cut(s)	319, 725
BmgT120I	GGNCC	1 cut(s)	159
BmiI	GGNNCC	3 cut(s)	280, 368, 518
BmrFI	CCNGG	1 cut(s)	1049
BmsI	GCATC	1 cut(s)	703
BpmI	CTGGAG	1 cut(s)	669
BsaAI	YACGTR	1 cut(s)	74
BsaJI	CCNNGG	2 cut(s)	979, 1048
BsaXI	ACNNNNNCTCC	2 cut(s)	642, 672
Bsc4I	CCNNNNNNNGG	1 cut(s)	416
Bse1I	ACTGG	3 cut(s)	368, 547, 809
Bse3DI	GCAATG	1 cut(s)	707
BseBI	CCWGG	1 cut(s)	1049
BseDI	CCNNGG	2 cut(s)	979, 1048
BseLI	CCNNNNNNNGG	1 cut(s)	416
BseMI	GCAATG	1 cut(s)	707
BseMII	CTCAG	1 cut(s)	629
BseNI	ACTGG	3 cut(s)	368, 547, 809
BseXI	GCAGC	3 cut(s)	335, 467, 952
BsgI	GTGCAG	1 cut(s)	856
BshFI	GGCC	2 cut(s)	297, 984
BslI	CCNNNNNNNGG	1 cut(s)	416
BsmI	GAATGC	2 cut(s)	23, 817
BsnI	GGCC	2 cut(s)	297, 984
Bsp143I	GATC	5 cut(s)	310, 590, 748, 1052, 1060
BspACI	CCGC	3 cut(s)	7, 298, 808
BspANI	GGCC	2 cut(s)	297, 984
BspCNI	CTCAG	1 cut(s)	628
BspLI	GGNNCC	3 cut(s)	280, 368, 518
BspMI	ACCTGC	1 cut(s)	813
BspPI	GGATC	4 cut(s)	305, 598, 1055, 1060
BsrDI	GCAATG	1 cut(s)	707
BsrI	ACTGG	3 cut(s)	368, 547, 809
BssECI	CCNNGG	2 cut(s)	979, 1048
BssMI	GATC	5 cut(s)	310, 590, 748, 1052, 1060
BssT1I	CCWWGG	1 cut(s)	979
Bst2UI	CCWGG	1 cut(s)	1049
Bst4CI	ACNGT	2 cut(s)	287, 345
Bst6I	CTCTTC	1 cut(s)	917
BstBAI	YACGTR	1 cut(s)	74
BstC8I	GCNNGC	2 cut(s)	460, 1124
BstDEI	CTNAG	2 cut(s)	482, 615
BstHHI	GCGC	2 cut(s)	455, 737
BstKTI	GATC	5 cut(s)	313, 593, 751, 1055, 1063
BstMBI	GATC	5 cut(s)	310, 590, 748, 1052, 1060
BstMWI	GCNNNNNNNGC	2 cut(s)	459, 713
BstNI	CCWGG	1 cut(s)	1049
BstNSI	RCATGY	1 cut(s)	462
BstSCI	CCNGG	1 cut(s)	1047
BstSFI	CTRYAG	1 cut(s)	708
BstSNI	TACGTA	1 cut(s)	74
BstV1I	GCAGC	3 cut(s)	335, 467, 952
BstX2I	RGATCY	1 cut(s)	590
BstYI	RGATCY	1 cut(s)	590
BsuI	GTATCC	1 cut(s)	114
BsuRI	GGCC	2 cut(s)	297, 984
BtrI	CACGTC	2 cut(s)	319, 725
BtsI	GCAGTG	1 cut(s)	844
BtsIMutI	CAGTG	2 cut(s)	350, 844
BveI	ACCTGC	1 cut(s)	813
Cac8I	GCNNGC	2 cut(s)	460, 1124
CaiI	CAGNNNCTG	1 cut(s)	716
CfoI	GCGC	2 cut(s)	455, 737
Cfr13I	GGNCC	1 cut(s)	159
Csp6I	GTAC	3 cut(s)	75, 288, 575
CviAII	CATG	3 cut(s)	371, 459, 986
CviJI	RGCY	7 cut(s)	297, 519, 584, 601, 784, 984, 1036
CviKI_1	RGCY	7 cut(s)	297, 519, 584, 601, 784, 984, 1036
CviQI	GTAC	3 cut(s)	75, 288, 575
DdeI	CTNAG	2 cut(s)	482, 615
DpnI	GATC	5 cut(s)	312, 592, 750, 1054, 1062
DpnII	GATC	5 cut(s)	310, 590, 748, 1052, 1060
EaeI	YGGCCR	2 cut(s)	295, 982
Eam1104I	CTCTTC	1 cut(s)	917
EarI	CTCTTC	1 cut(s)	917
EciI	GGCGGA	1 cut(s)	823
Eco105I	TACGTA	1 cut(s)	74
Eco130I	CCWWGG	1 cut(s)	979
Eco32I	GATATC	2 cut(s)	238, 1024
Eco47I	GGWCC	1 cut(s)	159
Eco57I	CTGAAG	1 cut(s)	157
EcoRII	CCWGG	1 cut(s)	1047
EcoRV	GATATC	2 cut(s)	238, 1024
EcoT14I	CCWWGG	1 cut(s)	979
ErhI	CCWWGG	1 cut(s)	979
FaeI	CATG	3 cut(s)	374, 462, 989
FalI	AAGNNNNNCTT	6 cut(s)	155, 187, 648, 680, 1020, 1052
FatI	CATG	3 cut(s)	370, 458, 985
Fnu4HI	GCNGC	4 cut(s)	298, 349, 456, 941
Fsp4HI	GCNGC	4 cut(s)	298, 349, 456, 941
FspBI	CTAG	1 cut(s)	602
FspI	TGCGCA	1 cut(s)	454
GlaI	GCGC	2 cut(s)	454, 736
GluI	GCNGC	4 cut(s)	298, 349, 456, 941
GsuI	CTGGAG	1 cut(s)	669
HaeIII	GGCC	2 cut(s)	297, 984
HhaI	GCGC	2 cut(s)	455, 737
Hin1II	CATG	3 cut(s)	374, 462, 989
Hin6I	GCGC	2 cut(s)	453, 735
HinP1I	GCGC	2 cut(s)	453, 735
HinfI	GANTC	7 cut(s)	392, 406, 498, 638, 887, 1003, 1108
HphI	GGTGA	2 cut(s)	215, 437
Hpy166II	GTNNAC	2 cut(s)	428, 1093
Hpy188I	TCNGA	7 cut(s)	176, 400, 618, 637, 697, 775, 1008
Hpy188III	TCNNGA	6 cut(s)	97, 308, 314, 389, 594, 648
Hpy8I	GTNNAC	2 cut(s)	428, 1093
HpyAV	CCTTC	2 cut(s)	5, 416
HpyCH4III	ACNGT	2 cut(s)	287, 345
HpyCH4IV	ACGT	4 cut(s)	73, 318, 724, 946
HpyCH4V	TGCA	5 cut(s)	216, 822, 837, 940, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	459, 713
HpyF3I	CTNAG	2 cut(s)	482, 615
HpySE526I	ACGT	4 cut(s)	73, 318, 724, 946
Hsp92II	CATG	3 cut(s)	374, 462, 989
HspAI	GCGC	2 cut(s)	453, 735
Kzo9I	GATC	5 cut(s)	310, 590, 748, 1052, 1060
LmnI	GCTCC	2 cut(s)	479, 516
Lsp1109I	GCAGC	3 cut(s)	335, 467, 952
LweI	GCATC	1 cut(s)	703
MaeI	CTAG	1 cut(s)	602
MaeII	ACGT	4 cut(s)	73, 318, 724, 946
MaeIII	GTNAC	1 cut(s)	131
MalI	GATC	5 cut(s)	312, 592, 750, 1054, 1062
MboI	GATC	5 cut(s)	310, 590, 748, 1052, 1060
MboII	GAAGA	5 cut(s)	335, 522, 694, 934, 941
MflI	RGATCY	1 cut(s)	590
MlsI	TGGCCA	1 cut(s)	984
MluCI	AATT	7 cut(s)	190, 197, 526, 673, 842, 873, 996
MluNI	TGGCCA	1 cut(s)	984
MlyI	GAGTC	1 cut(s)	881
MnlI	CCTC	9 cut(s)	352, 367, 406, 433, 441, 624, 644, 877, 943
Mox20I	TGGCCA	1 cut(s)	984
MroXI	GAANNNNTTC	1 cut(s)	609
MscI	TGGCCA	1 cut(s)	984
MseI	TTAA	3 cut(s)	83, 537, 962
Msp20I	TGGCCA	1 cut(s)	984
MspR9I	CCNGG	1 cut(s)	1049
Mva1269I	GAATGC	2 cut(s)	23, 817
MvaI	CCWGG	1 cut(s)	1049
MwoI	GCNNNNNNNGC	2 cut(s)	459, 713
NdeII	GATC	5 cut(s)	310, 590, 748, 1052, 1060
NlaIII	CATG	3 cut(s)	374, 462, 989
NlaIV	GGNNCC	3 cut(s)	280, 368, 518
NsbI	TGCGCA	1 cut(s)	454
NspI	RCATGY	1 cut(s)	462
PaeI	GCATGC	1 cut(s)	462
PaqCI	CACCTGC	1 cut(s)	813
PctI	GAATGC	2 cut(s)	23, 817
PdmI	GAANNNNTTC	1 cut(s)	609
PfeI	GAWTC	6 cut(s)	392, 406, 498, 638, 1003, 1108
PflMI	CCANNNNNTGG	1 cut(s)	416
PkrI	GCNGC	4 cut(s)	299, 350, 457, 942
PleI	GAGTC	1 cut(s)	881
PpsI	GAGTC	1 cut(s)	881
Ppu21I	YACGTR	1 cut(s)	74
PsiI	TTATAA	1 cut(s)	849
Psp6I	CCWGG	1 cut(s)	1047
PspGI	CCWGG	1 cut(s)	1047
PspN4I	GGNNCC	3 cut(s)	280, 368, 518
PspPI	GGNCC	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	716
PsuI	RGATCY	1 cut(s)	590
RsaI	GTAC	3 cut(s)	76, 289, 576
RsaNI	GTAC	3 cut(s)	75, 288, 575
SaqAI	TTAA	3 cut(s)	83, 537, 962
SatI	GCNGC	4 cut(s)	298, 349, 456, 941
Sau3AI	GATC	5 cut(s)	310, 590, 748, 1052, 1060
Sau96I	GGNCC	1 cut(s)	159
ScaI	AGTACT	1 cut(s)	576
SchI	GAGTC	1 cut(s)	881
ScrFI	CCNGG	1 cut(s)	1049
SfaNI	GCATC	1 cut(s)	703
SfcI	CTRYAG	1 cut(s)	708
SinI	GGWCC	1 cut(s)	159
SnaBI	TACGTA	1 cut(s)	74
SphI	GCATGC	1 cut(s)	462
Sse9I	AATT	7 cut(s)	190, 197, 526, 673, 842, 873, 996
SsiI	CCGC	3 cut(s)	7, 298, 808
SspI	AATATT	1 cut(s)	610
SspMI	CTAG	1 cut(s)	602
StyD4I	CCNGG	1 cut(s)	1047
StyI	CCWWGG	1 cut(s)	979
TaaI	ACNGT	2 cut(s)	287, 345
TaiI	ACGT	4 cut(s)	76, 321, 727, 949
TaqI	TCGA	3 cut(s)	240, 496, 1067
TasI	AATT	7 cut(s)	190, 197, 526, 673, 842, 873, 996
TatI	WGTACW	1 cut(s)	574
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	6 cut(s)	392, 406, 498, 638, 1003, 1108
Tru1I	TTAA	3 cut(s)	83, 537, 962
Tru9I	TTAA	3 cut(s)	83, 537, 962
TscAI	CASTG	2 cut(s)	350, 844
TseI	GCWGC	3 cut(s)	348, 455, 940
TspDTI	ATGAA	2 cut(s)	49, 585
TspRI	CASTG	2 cut(s)	350, 844
Van91I	CCANNNNNTGG	1 cut(s)	416
VpaK11BI	GGWCC	1 cut(s)	159
XapI	RAATTY	4 cut(s)	190, 197, 673, 842
XceI	RCATGY	1 cut(s)	462
XmnI	GAANNNNTTC	1 cut(s)	609
XspI	CTAG	1 cut(s)	602
ZrmI	AGTACT	1 cut(s)	576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.