AT4G24130

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0005672
Physical Location & Seq
Forward (+)
12527675 .. 12528686
1012 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24130.1

Sequence Viewer

Length: 474 bp
ATGGCGAGCGAGGGAGTTGTAGTTGTCGGAGGGGAGAGAGAAGGGGCTGAGATCGTGTACGGGGCGGAGGAATGTTACAAGCAATCATTGGAGCTTCTAGAGGAGCTAGGGTTTCCAAAAGGAGTCATGCCTTTGAAGAATCTTGTTGAGTGTGGAAGAGTTAGAGCCACTGGTTACGTTTGGATGAAGCAAGACACTCCTTACGAGCATTTCTTCGAAGCCACCAACACTCGTGTCTCCTACGGTCTCGAAGTCACCGCCTATGTCGACAAGTGTTGTATGAAGAAGATGACAGGAGTGAAGAGTAAGCAGATGTTTTTGTGGGTACCGATCGTGGAGATGAGTATGGAGGAGCCAAAAAGCAAGAAGATTTACTTCAAGACTCCTATGGGAATCGGCAGGTCTTTCCCCGTTACCGGATTCATGGACGAGGAAGAGAAACGCAACTTTTACTTGGAGAATCCCAAAAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

157

Amino Acids

17.95

Weight (kDa)

5.62

Isoelectric Point (pI)

45.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 31 - 141 3.5e-28 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 390
Acc65I GGTACC 1 cut(s) 325
AccB1I GGYRCC 1 cut(s) 325
AccI GTMKAC 1 cut(s) 267
AciI CCGC 2 cut(s) 65, 258
AfaI GTAC 2 cut(s) 59, 327
AfiI CCNNNNNNNGG 1 cut(s) 416
AgsI TTSAA 2 cut(s) 136, 379
AluBI AGCT 2 cut(s) 94, 106
AluI AGCT 2 cut(s) 94, 106
Alw26I GTCTC 2 cut(s) 241, 251
Asp718I GGTACC 1 cut(s) 325
AsuHPI GGTGA 1 cut(s) 247
AsuII TTCGAA 1 cut(s) 216
BanI GGYRCC 1 cut(s) 325
BauI CACGAG 1 cut(s) 231
BcoDI GTCTC 2 cut(s) 241, 251
BfaI CTAG 2 cut(s) 98, 107
BfuAI ACCTGC 1 cut(s) 390
BmiI GGNNCC 2 cut(s) 327, 354
Bpu14I TTCGAA 1 cut(s) 216
BsaI GGTCTC 1 cut(s) 251
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 4 cut(s) 6, 36, 95, 125
Bsc4I CCNNNNNNNGG 1 cut(s) 416
Bse1I ACTGG 1 cut(s) 175
BseGI GGATG 1 cut(s) 189
BseLI CCNNNNNNNGG 1 cut(s) 416
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 175
BseRI GAGGAG 2 cut(s) 116, 365
Bsh1285I CGRYCG 1 cut(s) 333
BshNI GGYRCC 1 cut(s) 325
BsiEI CGRYCG 1 cut(s) 333
BsiSI CCGG 1 cut(s) 417
BslI CCNNNNNNNGG 1 cut(s) 416
BsmAI GTCTC 2 cut(s) 241, 251
Bso31I GGTCTC 1 cut(s) 251
Bsp119I TTCGAA 1 cut(s) 216
Bsp143I GATC 2 cut(s) 51, 330
BspACI CCGC 2 cut(s) 65, 258
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 327, 354
BspMI ACCTGC 1 cut(s) 390
BspT104I TTCGAA 1 cut(s) 216
BspT107I GGYRCC 1 cut(s) 325
BspTNI GGTCTC 1 cut(s) 251
BsrI ACTGG 1 cut(s) 175
BssMI GATC 2 cut(s) 51, 330
BssSI CACGAG 1 cut(s) 231
Bst2BI CACGAG 1 cut(s) 231
Bst4CI ACNGT 1 cut(s) 245
Bst6I CTCTTC 3 cut(s) 151, 296, 429
BstBI TTCGAA 1 cut(s) 216
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 48
BstF5I GGATG 1 cut(s) 189
BstKTI GATC 2 cut(s) 54, 333
BstMAI GTCTC 2 cut(s) 241, 251
BstMBI GATC 2 cut(s) 51, 330
BstMCI CGRYCG 1 cut(s) 333
BtsCI GGATG 1 cut(s) 189
BtsIMutI CAGTG 1 cut(s) 168
BveI ACCTGC 1 cut(s) 390
Cac8I GCNNGC 1 cut(s) 7
Csp6I GTAC 2 cut(s) 58, 326
CviAII CATG 2 cut(s) 127, 424
CviJI RGCY 6 cut(s) 47, 94, 106, 167, 221, 355
CviKI_1 RGCY 6 cut(s) 47, 94, 106, 167, 221, 355
CviQI GTAC 2 cut(s) 58, 326
DdeI CTNAG 1 cut(s) 48
DpnI GATC 2 cut(s) 53, 332
DpnII GATC 2 cut(s) 51, 330
Eam1104I CTCTTC 3 cut(s) 151, 296, 429
EarI CTCTTC 3 cut(s) 151, 296, 429
EciI GGCGGA 1 cut(s) 80
Eco31I GGTCTC 1 cut(s) 251
FaeI CATG 2 cut(s) 130, 427
FaiI YATR 6 cut(s) 128, 264, 281, 347, 389, 425
FalI AAGNNNNNCTT 2 cut(s) 359, 391
FatI CATG 2 cut(s) 126, 423
FblI GTMKAC 1 cut(s) 267
FokI GGATG 1 cut(s) 196
FspBI CTAG 2 cut(s) 98, 107
HapII CCGG 1 cut(s) 417
Hin1II CATG 2 cut(s) 130, 427
HincII GTYRAC 1 cut(s) 268
HindII GTYRAC 1 cut(s) 268
HinfI GANTC 6 cut(s) 123, 139, 382, 393, 420, 460
HpaII CCGG 1 cut(s) 417
HphI GGTGA 1 cut(s) 247
Hpy166II GTNNAC 2 cut(s) 58, 268
Hpy188I TCNGA 1 cut(s) 29
Hpy188III TCNNGA 3 cut(s) 98, 248, 379
Hpy8I GTNNAC 2 cut(s) 58, 268
HpyAV CCTTC 1 cut(s) 35
HpyCH4III ACNGT 1 cut(s) 245
HpyCH4IV ACGT 1 cut(s) 177
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 177
Hsp92II CATG 2 cut(s) 130, 427
KpnI GGTACC 1 cut(s) 329
Kzo9I GATC 2 cut(s) 51, 330
LmnI GCTCC 3 cut(s) 91, 103, 352
LpnPI CCDG 4 cut(s) 156, 279, 385, 430
MaeI CTAG 2 cut(s) 98, 107
MaeII ACGT 1 cut(s) 177
MaeIII GTNAC 4 cut(s) 74, 173, 253, 412
MalI GATC 2 cut(s) 53, 332
MboI GATC 2 cut(s) 51, 330
MboII GAAGA 8 cut(s) 148, 168, 205, 295, 298, 313, 379, 446
MlyI GAGTC 2 cut(s) 132, 376
MmeI TCCRAC 1 cut(s) 7
MnlI CCTC 6 cut(s) 4, 23, 61, 94, 343, 424
MspI CCGG 1 cut(s) 417
NdeII GATC 2 cut(s) 51, 330
NlaIII CATG 2 cut(s) 130, 427
NlaIV GGNNCC 2 cut(s) 327, 354
NmuCI GTSAC 1 cut(s) 253
NspV TTCGAA 1 cut(s) 216
PfeI GAWTC 4 cut(s) 139, 393, 420, 460
Ple19I CGATCG 1 cut(s) 333
PleI GAGTC 2 cut(s) 131, 376
PpsI GAGTC 2 cut(s) 131, 376
PspN4I GGNNCC 2 cut(s) 327, 354
PvuI CGATCG 1 cut(s) 333
RsaI GTAC 2 cut(s) 59, 327
RsaNI GTAC 2 cut(s) 58, 326
SalI GTCGAC 1 cut(s) 266
Sau3AI GATC 2 cut(s) 51, 330
SchI GAGTC 2 cut(s) 132, 376
SetI ASST 4 cut(s) 96, 108, 180, 404
SfuI TTCGAA 1 cut(s) 216
SsiI CCGC 2 cut(s) 65, 258
SspMI CTAG 2 cut(s) 98, 107
TaaI ACNGT 1 cut(s) 245
TaiI ACGT 1 cut(s) 180
TaqI TCGA 3 cut(s) 216, 249, 267
TfiI GAWTC 4 cut(s) 139, 393, 420, 460
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 253
Tsp45I GTSAC 1 cut(s) 253
TspDTI ATGAA 3 cut(s) 200, 296, 412
TspRI CASTG 1 cut(s) 175
XbaI TCTAGA 1 cut(s) 97
XmiI GTMKAC 1 cut(s) 267
XspI CTAG 2 cut(s) 98, 107
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.