Rroxscaffold_4G00285750

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0005672
Physical Location & Seq
Reverse (-)
6954351 .. 6958367
4017 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00285750.1

Sequence Viewer

Length: 456 bp
ATGGCTCTTGTGGAAGACAAGCGCGCAGGTGCTGAGATTGTGCATGGAGCTCAAGAGTGCTGCCAACAGTCCATAGATCTCTTGGAAGAGCTGGGATTTCCCAAAGGTGTTCTTCCCCTGCAAGACCTGGTGGAGTGTGGAAGGGTGAAGGAAACTGGGTTTGTGTGGATGAAGCAGAAGGCGCCATACGAGCACTTCTTCGTTGGGTCGAACACGCGTGTGAGCTACGCGACTGAGGTGACTGCGTATGTGGAGAAGGGCAGGATGAAGAAGATGACTGGGATCAAGAGCAAGCAGCTGTTTCTTTGGGTGCCTATTAGTGAGATGATCATGGAAGAGCCAGCAACCAAGAAGATCACTTTCAAGACTCCGATGGGGCTCGGAAGGCCTTTTCCGGTCACGGCTTTCATGACCGAGGAGGAGAAGCAGAAGTATCTGGAGAATAGTAATGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

151

Amino Acids

17.16

Weight (kDa)

6.19

Isoelectric Point (pI)

53.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 26 - 136 8.7e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 17
Acc36I ACCTGC 1 cut(s) 17
AccB1I GGYRCC 2 cut(s) 181, 310
AccII CGCG 3 cut(s) 24, 217, 230
AclWI GGATC 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 1 cut(s) 364
AjnI CCWGG 1 cut(s) 126
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 4 cut(s) 50, 91, 225, 298
AluI AGCT 4 cut(s) 50, 91, 225, 298
Alw21I GWGCWC 2 cut(s) 52, 195
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 32
AoxI GGCC 1 cut(s) 386
ApeKI GCWGC 2 cut(s) 60, 295
AspLEI GCGC 3 cut(s) 24, 26, 184
AsuHPI GGTGA 2 cut(s) 157, 250
BanI GGYRCC 2 cut(s) 181, 310
BanII GRGCYC 2 cut(s) 52, 381
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 52, 195
BbvI GCAGC 2 cut(s) 47, 307
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 417
BciT130I CCWGG 1 cut(s) 128
BclI TGATCA 1 cut(s) 327
BfoI RGCGCY 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 17
BglII AGATCT 1 cut(s) 76
BisI GCNGC 2 cut(s) 61, 296
BlsI GCNGC 2 cut(s) 62, 297
Bme1390I CCNGG 1 cut(s) 128
BmiI GGNNCC 2 cut(s) 183, 312
BmrFI CCNGG 1 cut(s) 128
BmrI ACTGGG 2 cut(s) 165, 288
BmuI ACTGGG 2 cut(s) 165, 288
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 36
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 394
Bse1I ACTGG 2 cut(s) 160, 283
BseBI CCWGG 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 174, 270
BseMII CTCAG 2 cut(s) 24, 225
BseNI ACTGG 2 cut(s) 160, 283
BsePI GCGCGC 1 cut(s) 22
BseRI GAGGAG 2 cut(s) 431, 434
BseXI GCAGC 2 cut(s) 47, 307
BseYI CCCAGC 1 cut(s) 91
Bsh1236I CGCG 3 cut(s) 24, 217, 230
BshFI GGCC 1 cut(s) 388
BshNI GGYRCC 2 cut(s) 181, 310
BsiHKAI GWGCWC 2 cut(s) 52, 195
BsiSI CCGG 1 cut(s) 395
BsnI GGCC 1 cut(s) 388
Bsp1286I GDGCHC 3 cut(s) 52, 195, 381
Bsp143I GATC 4 cut(s) 76, 282, 327, 354
BspANI GGCC 1 cut(s) 388
BspCNI CTCAG 2 cut(s) 25, 226
BspFNI CGCG 3 cut(s) 24, 217, 230
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 183, 312
BspMI ACCTGC 1 cut(s) 17
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 2 cut(s) 81, 330
BspT107I GGYRCC 2 cut(s) 181, 310
BsrI ACTGG 2 cut(s) 160, 283
BssECI CCNNGG 1 cut(s) 414
BssHII GCGCGC 1 cut(s) 22
BssMI GATC 4 cut(s) 76, 282, 327, 354
BssNI GRCGYC 1 cut(s) 182
Bst2UI CCWGG 1 cut(s) 128
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 81, 330
BstACI GRCGYC 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 24, 293, 342
BstDEI CTNAG 2 cut(s) 33, 234
BstF5I GGATG 2 cut(s) 174, 270
BstFNI CGCG 3 cut(s) 24, 217, 230
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 3 cut(s) 24, 26, 184
BstKTI GATC 4 cut(s) 79, 285, 330, 357
BstMBI GATC 4 cut(s) 76, 282, 327, 354
BstMWI GCNNNNNNNGC 3 cut(s) 181, 190, 385
BstNI CCWGG 1 cut(s) 128
BstSCI CCNGG 1 cut(s) 126
BstUI CGCG 3 cut(s) 24, 217, 230
BstV1I GCAGC 2 cut(s) 47, 307
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BsuRI GGCC 1 cut(s) 388
BtsCI GGATG 2 cut(s) 174, 270
BveI ACCTGC 1 cut(s) 17
Cac8I GCNNGC 3 cut(s) 24, 293, 342
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 408
CfoI GCGC 3 cut(s) 24, 26, 184
CsiI ACCWGGT 1 cut(s) 126
CviAII CATG 3 cut(s) 44, 331, 409
CviJI RGCY 9 cut(s) 5, 50, 91, 225, 298, 340, 379, 388, 404
CviKI_1 RGCY 9 cut(s) 5, 50, 91, 225, 298, 340, 379, 388, 404
DdeI CTNAG 2 cut(s) 33, 234
DinI GGCGCC 1 cut(s) 183
DpnI GATC 4 cut(s) 78, 284, 329, 356
DpnII GATC 4 cut(s) 76, 282, 327, 354
Eam1104I CTCTTC 2 cut(s) 81, 330
EarI CTCTTC 2 cut(s) 81, 330
Ecl136II GAGCTC 1 cut(s) 50
Eco147I AGGCCT 1 cut(s) 388
Eco24I GRGCYC 2 cut(s) 52, 381
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoRII CCWGG 1 cut(s) 126
EcoT38I GRGCYC 2 cut(s) 52, 381
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 3 cut(s) 47, 334, 412
FaiI YATR 6 cut(s) 45, 74, 187, 249, 332, 410
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 3 cut(s) 43, 330, 408
FbaI TGATCA 1 cut(s) 327
Fnu4HI GCNGC 2 cut(s) 61, 296
FokI GGATG 2 cut(s) 181, 277
FriOI GRGCYC 2 cut(s) 52, 381
Fsp4HI GCNGC 2 cut(s) 61, 296
GlaI GCGC 3 cut(s) 23, 25, 183
GluI GCNGC 2 cut(s) 61, 296
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 185
HaeIII GGCC 1 cut(s) 388
HapII CCGG 1 cut(s) 395
HhaI GCGC 3 cut(s) 24, 26, 184
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 3 cut(s) 47, 334, 412
Hin6I GCGC 3 cut(s) 22, 24, 182
HinP1I GCGC 3 cut(s) 22, 24, 182
HinfI GANTC 1 cut(s) 367
HpaII CCGG 1 cut(s) 395
HphI GGTGA 2 cut(s) 157, 250
Hpy188I TCNGA 2 cut(s) 372, 383
Hpy188III TCNNGA 5 cut(s) 53, 286, 364, 409, 437
HpyAV CCTTC 5 cut(s) 135, 142, 172, 250, 378
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 43, 121
HpyF10VI GCNNNNNNNGC 3 cut(s) 181, 190, 385
HpyF3I CTNAG 2 cut(s) 33, 234
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 47, 334, 412
HspAI GCGC 3 cut(s) 22, 24, 182
KasI GGCGCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 4 cut(s) 76, 282, 327, 354
LguI GCTCTTC 2 cut(s) 81, 330
LmnI GCTCC 1 cut(s) 47
Lsp1109I GCAGC 2 cut(s) 47, 307
MabI ACCWGGT 1 cut(s) 126
MaeIII GTNAC 2 cut(s) 238, 397
MalI GATC 4 cut(s) 78, 284, 329, 356
MboI GATC 4 cut(s) 76, 282, 327, 354
MboII GAAGA 8 cut(s) 26, 98, 104, 190, 280, 283, 347, 364
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 3 cut(s) 52, 195, 381
MluI ACGCGT 1 cut(s) 215
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 3 cut(s) 229, 409, 412
MslI CAYNNNNRTG 1 cut(s) 218
MspA1I CMGCKG 1 cut(s) 298
MspI CCGG 1 cut(s) 395
MspR9I CCNGG 1 cut(s) 128
MvaI CCWGG 1 cut(s) 128
MvnI CGCG 3 cut(s) 24, 217, 230
MwoI GCNNNNNNNGC 3 cut(s) 181, 190, 385
NarI GGCGCC 1 cut(s) 182
NdeII GATC 4 cut(s) 76, 282, 327, 354
NlaIII CATG 3 cut(s) 47, 334, 412
NlaIV GGNNCC 2 cut(s) 183, 312
NmuCI GTSAC 2 cut(s) 238, 397
OliI CACNNNNGTG 1 cut(s) 218
PagI TCATGA 1 cut(s) 408
PaqCI CACCTGC 1 cut(s) 17
PauI GCGCGC 1 cut(s) 22
PceI AGGCCT 1 cut(s) 388
PciSI GCTCTTC 2 cut(s) 81, 330
PkrI GCNGC 2 cut(s) 62, 297
PleI GAGTC 1 cut(s) 361
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 361
Psp124BI GAGCTC 1 cut(s) 52
Psp6I CCWGG 1 cut(s) 126
PspFI CCCAGC 1 cut(s) 91
PspGI CCWGG 1 cut(s) 126
PspN4I GGNNCC 2 cut(s) 183, 312
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 1 cut(s) 76
PteI GCGCGC 1 cut(s) 22
PvuII CAGCTG 1 cut(s) 298
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 2 cut(s) 81, 330
SatI GCNGC 2 cut(s) 61, 296
Sau3AI GATC 4 cut(s) 76, 282, 327, 354
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 128
SduI GDGCHC 3 cut(s) 52, 195, 381
SetI ASST 8 cut(s) 31, 52, 93, 109, 129, 227, 240, 300
SexAI ACCWGGT 1 cut(s) 126
SfoI GGCGCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
SseBI AGGCCT 1 cut(s) 388
SspDI GGCGCC 1 cut(s) 181
SstI GAGCTC 1 cut(s) 52
StuI AGGCCT 1 cut(s) 388
StyD4I CCNGG 1 cut(s) 126
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 209
TaqII GACCGA 1 cut(s) 428
TseFI GTSAC 2 cut(s) 238, 397
TseI GCWGC 2 cut(s) 60, 295
Tsp45I GTSAC 2 cut(s) 238, 397
TspDTI ATGAA 3 cut(s) 185, 281, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.