Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005672

Physical Location & Seq

Genomic Coordinates Reverse (-)

6186317 .. 6186778

Gene Structure 462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g10920.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCTTTGGTTGTGGAAGACAAGCGTGCAGGTGCTGAGATCGTGCATGGAGCTGAAGAGTGTTACCAACAATCCATTGATCTCTTGGAAGAGCTGGGTTTTCCCAAAGGTGTGCTTCCACTGAAAGACCTGGTGGAGTGTGGAAGAGTGAGGGAAACTGGGTTTGTGTGGATGAAGCAGAAGGCGCCCTACGAGCACTTCTTTGTTGGGGCTAACACGAGAGTGAGCTACGCGACTGAGGTGACTGCGTATGTGGAGAAGGGGAGGATGAAGAAGATGACTGGGATCAAGAGCAAGCAGGTGTTTCTTTGGGTGCCTATTACTGAGATGATCATGGAGGAGCCGTCAACCAAGAAGATCACTTTCAAGACTCCGATGGGGATCGGGAGGTCTTTTCCGGTGACGGCTTTCATGACTGAGGAGGAGAAGCAGAAGTATCTCGAGAATGGTAACGAAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

154

Amino Acids

17.43

Weight (kDa)

5.84

Isoelectric Point (pI)

50.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	27 - 137	1.9e-31	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24130
fragaria_vesca	FvH4_5g10920 FvH4_6g37650
malus_domestica	MD04G1123900.v1.1 MD06G1118500.v1.1 MD14G1126600.v1.1
prunus_persica	Prupe.5G129600_v2.0.a1
pyrus_communis	pycom06g11000 pycom14g11120
rosa_chinensis	RchiOBHm_Chr1g0371381 RchiOBHm_Chr7g0186901
rosa_laevigata	RLG00000004807 RLG00000026968
rosa_multiflora	Rmu_sc0000809.1_g000034 Rmu_ssc0000024.1_g000030
rosa_roxburghii	Rroxscaffold_3G00267740 Rroxscaffold_4G00285750
rosa_rugosa	Rorug01G0363500.1 Rorug06G0478000
rosa_samantha	Rh1AG373500 Rh1BG337000 Rh1DG368000 Rh7AG083600 Rh7BG079200 Rh7CG084600 Rh7DG085500
rosa_wichuraiana	Rw1G032860 Rw7G007360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	20, 289
Acc36I	ACCTGC	2 cut(s)	20, 289
AccB1I	GGYRCC	2 cut(s)	184, 313
AccII	CGCG	1 cut(s)	233
AclWI	GGATC	2 cut(s)	293, 389
AcuI	CTGAAG	1 cut(s)	75
AcyI	GRCGYC	1 cut(s)	185
AgsI	TTSAA	1 cut(s)	367
AjnI	CCWGG	1 cut(s)	129
AleI	CACNNNNGTG	1 cut(s)	221
AluBI	AGCT	3 cut(s)	53, 94, 228
AluI	AGCT	3 cut(s)	53, 94, 228
Alw21I	GWGCWC	1 cut(s)	198
AlwI	GGATC	2 cut(s)	293, 389
AlwNI	CAGNNNCTG	1 cut(s)	35
Ama87I	CYCGRG	1 cut(s)	440
AspLEI	GCGC	1 cut(s)	187
AsuHPI	GGTGA	2 cut(s)	253, 412
AvaI	CYCGRG	1 cut(s)	440
BanI	GGYRCC	2 cut(s)	184, 313
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BauI	CACGAG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	198
BccI	CCATC	1 cut(s)	370
BceAI	ACGGC	2 cut(s)	328, 420
BciT130I	CCWGG	1 cut(s)	131
BclI	TGATCA	1 cut(s)	330
BfoI	RGCGCY	1 cut(s)	188
BfuAI	ACCTGC	2 cut(s)	20, 289
Bme1390I	CCNGG	1 cut(s)	131
BmeT110I	CYCGRG	1 cut(s)	440
BmiI	GGNNCC	3 cut(s)	186, 315, 342
BmrFI	CCNGG	1 cut(s)	131
BmrI	ACTGGG	2 cut(s)	168, 291
BmuI	ACTGGG	2 cut(s)	168, 291
BpiI	GAAGAC	1 cut(s)	24
BsaBI	GATNNNNATC	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	185
BsaWI	WCCGGW	1 cut(s)	397
BsaXI	ACNNNNNCTCC	2 cut(s)	329, 359
Bse1I	ACTGG	2 cut(s)	163, 286
Bse8I	GATNNNNATC	1 cut(s)	380
BseBI	CCWGG	1 cut(s)	131
BseGI	GGATG	2 cut(s)	177, 273
BseJI	GATNNNNATC	1 cut(s)	380
BseMII	CTCAG	4 cut(s)	27, 228, 315, 408
BseNI	ACTGG	2 cut(s)	163, 286
BseRI	GAGGAG	3 cut(s)	353, 434, 437
BseYI	CCCAGC	1 cut(s)	94
BsgI	GTGCAG	1 cut(s)	48
Bsh1236I	CGCG	1 cut(s)	233
BshNI	GGYRCC	2 cut(s)	184, 313
BsiHKAI	GWGCWC	1 cut(s)	198
BsiHKCI	CYCGRG	1 cut(s)	440
BsiSI	CCGG	1 cut(s)	398
BsoBI	CYCGRG	1 cut(s)	440
Bsp1286I	GDGCHC	1 cut(s)	198
Bsp143I	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
BspCNI	CTCAG	4 cut(s)	28, 229, 316, 409
BspFNI	CGCG	1 cut(s)	233
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	186, 315, 342
BspMI	ACCTGC	2 cut(s)	20, 289
BspPI	GGATC	2 cut(s)	293, 389
BspQI	GCTCTTC	1 cut(s)	84
BspT107I	GGYRCC	2 cut(s)	184, 313
BsrI	ACTGG	2 cut(s)	163, 286
BssMI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
BssNI	GRCGYC	1 cut(s)	185
BssSI	CACGAG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	217
Bst2UI	CCWGG	1 cut(s)	131
Bst6I	CTCTTC	4 cut(s)	51, 84, 139, 450
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	2 cut(s)	27, 296
BstDEI	CTNAG	4 cut(s)	36, 237, 324, 417
BstF5I	GGATG	2 cut(s)	177, 273
BstFNI	CGCG	1 cut(s)	233
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	6 cut(s)	42, 82, 288, 333, 360, 384
BstMBI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 193
BstNI	CCWGG	1 cut(s)	131
BstSCI	CCNGG	1 cut(s)	129
BstUI	CGCG	1 cut(s)	233
BstV2I	GAAGAC	1 cut(s)	24
BtsCI	GGATG	2 cut(s)	177, 273
BtsIMutI	CAGTG	1 cut(s)	119
BveI	ACCTGC	2 cut(s)	20, 289
Cac8I	GCNNGC	2 cut(s)	27, 296
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	1 cut(s)	187
CsiI	ACCWGGT	1 cut(s)	129
CviAII	CATG	3 cut(s)	47, 334, 412
CviJI	RGCY	7 cut(s)	5, 53, 94, 212, 228, 343, 407
CviKI_1	RGCY	7 cut(s)	5, 53, 94, 212, 228, 343, 407
DdeI	CTNAG	4 cut(s)	36, 237, 324, 417
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	6 cut(s)	41, 81, 287, 332, 359, 383
DpnII	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
Eam1104I	CTCTTC	4 cut(s)	51, 84, 139, 450
EarI	CTCTTC	4 cut(s)	51, 84, 139, 450
Eco57I	CTGAAG	1 cut(s)	75
Eco88I	CYCGRG	1 cut(s)	440
EcoRII	CCWGG	1 cut(s)	129
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
FaeI	CATG	3 cut(s)	50, 337, 415
FaiI	YATR	4 cut(s)	48, 252, 335, 413
FalI	AAGNNNNNCTT	2 cut(s)	99, 131
FatI	CATG	3 cut(s)	46, 333, 411
FbaI	TGATCA	1 cut(s)	330
FokI	GGATG	2 cut(s)	184, 280
GlaI	GCGC	1 cut(s)	186
GsaI	CCCAGC	1 cut(s)	98
HaeII	RGCGCY	1 cut(s)	188
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	50, 337, 415
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	348
HindII	GTYRAC	1 cut(s)	348
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	253, 412
Hpy166II	GTNNAC	1 cut(s)	348
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	6 cut(s)	289, 367, 385, 412, 440, 442
Hpy8I	GTNNAC	1 cut(s)	348
HpyAV	CCTTC	2 cut(s)	175, 253
HpyCH4V	TGCA	2 cut(s)	29, 46
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 193
HpyF3I	CTNAG	4 cut(s)	36, 237, 324, 417
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	50, 337, 415
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
LguI	GCTCTTC	1 cut(s)	84
LmnI	GCTCC	2 cut(s)	50, 340
LpnPI	CCDG	8 cut(s)	15, 80, 116, 143, 144, 267, 284, 411
MabI	ACCWGGT	1 cut(s)	129
MaeIII	GTNAC	4 cut(s)	62, 241, 400, 449
MalI	GATC	6 cut(s)	41, 81, 287, 332, 359, 383
MboI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
MboII	GAAGA	7 cut(s)	29, 68, 101, 156, 283, 286, 367
MhlI	GDGCHC	1 cut(s)	198
Mly113I	GGCGCC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	7 cut(s)	144, 232, 258, 331, 381, 412, 415
MslI	CAYNNNNRTG	1 cut(s)	221
MspI	CCGG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	131
MvaI	CCWGG	1 cut(s)	131
MvnI	CGCG	1 cut(s)	233
MwoI	GCNNNNNNNGC	2 cut(s)	184, 193
NarI	GGCGCC	1 cut(s)	185
NdeII	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
NlaIII	CATG	3 cut(s)	50, 337, 415
NlaIV	GGNNCC	3 cut(s)	186, 315, 342
NmuCI	GTSAC	2 cut(s)	241, 400
OliI	CACNNNNGTG	1 cut(s)	221
PaeR7I	CTCGAG	1 cut(s)	440
PagI	TCATGA	1 cut(s)	411
PaqCI	CACCTGC	2 cut(s)	20, 289
PciSI	GCTCTTC	1 cut(s)	84
PleI	GAGTC	1 cut(s)	364
PluTI	GGCGCC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	364
Psp6I	CCWGG	1 cut(s)	129
PspFI	CCCAGC	1 cut(s)	94
PspGI	CCWGG	1 cut(s)	129
PspN4I	GGNNCC	3 cut(s)	186, 315, 342
PstNI	CAGNNNCTG	1 cut(s)	35
RseI	CAYNNNNRTG	1 cut(s)	221
SapI	GCTCTTC	1 cut(s)	84
Sau3AI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
SchI	GAGTC	1 cut(s)	364
ScrFI	CCNGG	1 cut(s)	131
SduI	GDGCHC	1 cut(s)	198
SetI	ASST	9 cut(s)	34, 55, 96, 112, 132, 230, 243, 303, 392
SexAI	ACCWGGT	1 cut(s)	129
SfoI	GGCGCC	1 cut(s)	186
Sfr274I	CTCGAG	1 cut(s)	440
SlaI	CTCGAG	1 cut(s)	440
SmiMI	CAYNNNNRTG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	440
SmoI	CTYRAG	1 cut(s)	440
SspDI	GGCGCC	1 cut(s)	184
StyD4I	CCNGG	1 cut(s)	129
TaqI	TCGA	1 cut(s)	441
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	241, 400
Tsp45I	GTSAC	2 cut(s)	241, 400
TspDTI	ATGAA	3 cut(s)	188, 284, 400
TspRI	CASTG	1 cut(s)	126
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XhoI	CTCGAG	1 cut(s)	440

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.