Rh7DG085500

Protein of unknown function, DUF538

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0005672
Physical Location & Seq
Forward (+)
6824827 .. 6825279
453 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG085500.1

Sequence Viewer

Length: 453 bp
ATGGCTCTTGTGGAAGACAAGCGTGCAGGTGCTGAGATTGTGCATGGAGCTCAAGAGTGCTACCAACAGTCCATAGATCTCTTGGAAGAGCTGGGATTTCCCAAAGGTGTTCTTCCCCTGCAAGATCTGGTGGAGTGTGGAAGGGTGAAGGAAACTGGGTTTGTGTGGATGAAGCAGAAGGCGCCATACGAGCACTTCTTTGTTGGGTCGAACACGCGTGTGAGCTACGCGACTGAGGTGACTGCGTATGTGGAGAAGGGCAGGATGAAGAAGATGACCGGGATCAAGAGCAAGCAGGTGTTTCTTTGGGTGCCTATTAGTGAGATGATCATGGAAGAGCCAGCAACCAAGAAGATCACTTTCAAGACTCCGATGGGGCTCGGAAGGACTTTTCCGGTCACGGCTTTCATGACCGAGGAGGAGAAGCAGAAGTATCTGGAGAATGGTAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF538

Protein Analysis

150

Amino Acids

17.05

Weight (kDa)

6.75

Isoelectric Point (pI)

50.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF538 PF04398 26 - 136 4.7e-31 Protein of unknown function, DUF538
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 17, 286
Acc36I ACCTGC 2 cut(s) 17, 286
AccB1I GGYRCC 2 cut(s) 181, 310
AccII CGCG 2 cut(s) 217, 230
AclWI GGATC 1 cut(s) 290
AcyI GRCGYC 1 cut(s) 182
AflIII ACRYGT 1 cut(s) 215
AgsI TTSAA 1 cut(s) 364
AleI CACNNNNGTG 1 cut(s) 218
AluBI AGCT 3 cut(s) 50, 91, 225
AluI AGCT 3 cut(s) 50, 91, 225
Alw21I GWGCWC 2 cut(s) 52, 195
AlwI GGATC 1 cut(s) 290
AlwNI CAGNNNCTG 1 cut(s) 32
AspLEI GCGC 1 cut(s) 184
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 157, 250
BanI GGYRCC 2 cut(s) 181, 310
BanII GRGCYC 2 cut(s) 52, 381
BarI GAAGNNNNNNTAC 2 cut(s) 170, 202
BbsI GAAGAC 1 cut(s) 21
Bbv12I GWGCWC 2 cut(s) 52, 195
BccI CCATC 1 cut(s) 367
BceAI ACGGC 1 cut(s) 417
BclI TGATCA 1 cut(s) 327
BcnI CCSGG 1 cut(s) 280
BfoI RGCGCY 1 cut(s) 185
BfuAI ACCTGC 2 cut(s) 17, 286
BglII AGATCT 2 cut(s) 76, 124
Bme1390I CCNGG 1 cut(s) 280
BmiI GGNNCC 2 cut(s) 183, 312
BmrFI CCNGG 1 cut(s) 280
BmrI ACTGGG 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 165
BpiI GAAGAC 1 cut(s) 21
BpuEI CTTGAG 1 cut(s) 36
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 182
BsaJI CCNNGG 1 cut(s) 414
BsaWI WCCGGW 1 cut(s) 394
Bse1I ACTGG 1 cut(s) 160
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 2 cut(s) 174, 270
BseMII CTCAG 2 cut(s) 24, 225
BseNI ACTGG 1 cut(s) 160
BseRI GAGGAG 2 cut(s) 431, 434
BseYI CCCAGC 1 cut(s) 91
BsgI GTGCAG 1 cut(s) 45
Bsh1236I CGCG 2 cut(s) 217, 230
BshNI GGYRCC 2 cut(s) 181, 310
BsiHKAI GWGCWC 2 cut(s) 52, 195
BsiSI CCGG 2 cut(s) 279, 395
Bsp1286I GDGCHC 3 cut(s) 52, 195, 381
Bsp143I GATC 5 cut(s) 76, 124, 282, 327, 354
BspCNI CTCAG 2 cut(s) 25, 226
BspFNI CGCG 2 cut(s) 217, 230
BspHI TCATGA 1 cut(s) 408
BspLI GGNNCC 2 cut(s) 183, 312
BspMI ACCTGC 2 cut(s) 17, 286
BspPI GGATC 1 cut(s) 290
BspQI GCTCTTC 2 cut(s) 81, 330
BspT107I GGYRCC 2 cut(s) 181, 310
BsrI ACTGG 1 cut(s) 160
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 5 cut(s) 76, 124, 282, 327, 354
BssNI GRCGYC 1 cut(s) 182
Bst4CI ACNGT 1 cut(s) 69
Bst6I CTCTTC 2 cut(s) 81, 330
BstACI GRCGYC 1 cut(s) 182
BstC8I GCNNGC 3 cut(s) 24, 293, 342
BstDEI CTNAG 2 cut(s) 33, 234
BstF5I GGATG 2 cut(s) 174, 270
BstFNI CGCG 2 cut(s) 217, 230
BstH2I RGCGCY 1 cut(s) 185
BstHHI GCGC 1 cut(s) 184
BstKTI GATC 5 cut(s) 79, 127, 285, 330, 357
BstMBI GATC 5 cut(s) 76, 124, 282, 327, 354
BstMWI GCNNNNNNNGC 2 cut(s) 181, 190
BstSCI CCNGG 1 cut(s) 278
BstUI CGCG 2 cut(s) 217, 230
BstV2I GAAGAC 1 cut(s) 21
BstX2I RGATCY 2 cut(s) 76, 124
BstYI RGATCY 2 cut(s) 76, 124
BtsCI GGATG 2 cut(s) 174, 270
BveI ACCTGC 2 cut(s) 17, 286
Cac8I GCNNGC 3 cut(s) 24, 293, 342
CaiI CAGNNNCTG 1 cut(s) 32
CciI TCATGA 1 cut(s) 408
CfoI GCGC 1 cut(s) 184
CviAII CATG 3 cut(s) 44, 331, 409
CviJI RGCY 7 cut(s) 5, 50, 91, 225, 340, 379, 404
CviKI_1 RGCY 7 cut(s) 5, 50, 91, 225, 340, 379, 404
DdeI CTNAG 2 cut(s) 33, 234
DinI GGCGCC 1 cut(s) 183
DpnI GATC 5 cut(s) 78, 126, 284, 329, 356
DpnII GATC 5 cut(s) 76, 124, 282, 327, 354
Eam1104I CTCTTC 2 cut(s) 81, 330
EarI CTCTTC 2 cut(s) 81, 330
Ecl136II GAGCTC 1 cut(s) 50
Eco24I GRGCYC 2 cut(s) 52, 381
Eco53kI GAGCTC 1 cut(s) 50
EcoICRI GAGCTC 1 cut(s) 50
EcoT38I GRGCYC 2 cut(s) 52, 381
EgeI GGCGCC 1 cut(s) 183
EheI GGCGCC 1 cut(s) 183
FaeI CATG 3 cut(s) 47, 334, 412
FaiI YATR 6 cut(s) 45, 74, 187, 249, 332, 410
FalI AAGNNNNNCTT 2 cut(s) 96, 128
FatI CATG 3 cut(s) 43, 330, 408
FbaI TGATCA 1 cut(s) 327
FokI GGATG 2 cut(s) 181, 277
FriOI GRGCYC 2 cut(s) 52, 381
GlaI GCGC 1 cut(s) 183
GsaI CCCAGC 1 cut(s) 95
HaeII RGCGCY 1 cut(s) 185
HapII CCGG 2 cut(s) 279, 395
HhaI GCGC 1 cut(s) 184
Hin1I GRCGYC 1 cut(s) 182
Hin1II CATG 3 cut(s) 47, 334, 412
Hin6I GCGC 1 cut(s) 182
HinP1I GCGC 1 cut(s) 182
HinfI GANTC 1 cut(s) 367
HpaII CCGG 2 cut(s) 279, 395
HphI GGTGA 2 cut(s) 157, 250
Hpy188I TCNGA 2 cut(s) 372, 383
Hpy188III TCNNGA 5 cut(s) 53, 286, 364, 409, 437
HpyAV CCTTC 5 cut(s) 135, 142, 172, 250, 378
HpyCH4III ACNGT 1 cut(s) 69
HpyCH4V TGCA 3 cut(s) 26, 43, 121
HpyF10VI GCNNNNNNNGC 2 cut(s) 181, 190
HpyF3I CTNAG 2 cut(s) 33, 234
Hsp92I GRCGYC 1 cut(s) 182
Hsp92II CATG 3 cut(s) 47, 334, 412
HspAI GCGC 1 cut(s) 182
KasI GGCGCC 1 cut(s) 181
Ksp22I TGATCA 1 cut(s) 327
Kzo9I GATC 5 cut(s) 76, 124, 282, 327, 354
LguI GCTCTTC 2 cut(s) 81, 330
LmnI GCTCC 1 cut(s) 47
MaeIII GTNAC 2 cut(s) 238, 397
MalI GATC 5 cut(s) 78, 126, 284, 329, 356
MboI GATC 5 cut(s) 76, 124, 282, 327, 354
MboII GAAGA 7 cut(s) 26, 98, 104, 280, 283, 347, 364
MflI RGATCY 2 cut(s) 76, 124
MhlI GDGCHC 3 cut(s) 52, 195, 381
MluCI AATT 1 cut(s) 448
MluI ACGCGT 1 cut(s) 215
Mly113I GGCGCC 1 cut(s) 182
MlyI GAGTC 1 cut(s) 361
MnlI CCTC 3 cut(s) 229, 409, 412
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 2 cut(s) 279, 395
MspR9I CCNGG 1 cut(s) 280
MvnI CGCG 2 cut(s) 217, 230
MwoI GCNNNNNNNGC 2 cut(s) 181, 190
NarI GGCGCC 1 cut(s) 182
NciI CCSGG 1 cut(s) 280
NdeII GATC 5 cut(s) 76, 124, 282, 327, 354
NlaIII CATG 3 cut(s) 47, 334, 412
NlaIV GGNNCC 2 cut(s) 183, 312
NmuCI GTSAC 2 cut(s) 238, 397
OliI CACNNNNGTG 1 cut(s) 218
PagI TCATGA 1 cut(s) 408
PaqCI CACCTGC 2 cut(s) 17, 286
PciSI GCTCTTC 2 cut(s) 81, 330
PleI GAGTC 1 cut(s) 361
PluTI GGCGCC 1 cut(s) 185
PpsI GAGTC 1 cut(s) 361
Psp124BI GAGCTC 1 cut(s) 52
PspFI CCCAGC 1 cut(s) 91
PspN4I GGNNCC 2 cut(s) 183, 312
PstNI CAGNNNCTG 1 cut(s) 32
PsuI RGATCY 2 cut(s) 76, 124
RseI CAYNNNNRTG 1 cut(s) 218
SacI GAGCTC 1 cut(s) 52
SapI GCTCTTC 2 cut(s) 81, 330
Sau3AI GATC 5 cut(s) 76, 124, 282, 327, 354
SchI GAGTC 1 cut(s) 361
ScrFI CCNGG 1 cut(s) 280
SduI GDGCHC 3 cut(s) 52, 195, 381
SetI ASST 7 cut(s) 31, 52, 93, 109, 227, 240, 300
SfoI GGCGCC 1 cut(s) 183
SmiMI CAYNNNNRTG 1 cut(s) 218
SmlI CTYRAG 1 cut(s) 51
SmoI CTYRAG 1 cut(s) 51
Sse9I AATT 1 cut(s) 448
SspDI GGCGCC 1 cut(s) 181
SstI GAGCTC 1 cut(s) 52
StyD4I CCNGG 1 cut(s) 278
TaaI ACNGT 1 cut(s) 69
TaqI TCGA 1 cut(s) 209
TaqII GACCGA 1 cut(s) 428
TasI AATT 1 cut(s) 448
TseFI GTSAC 2 cut(s) 238, 397
Tsp45I GTSAC 2 cut(s) 238, 397
TspDTI ATGAA 3 cut(s) 185, 281, 397
XcmI CCANNNNNNNNNTGG 1 cut(s) 79
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.