Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0005672

Physical Location & Seq

Genomic Coordinates Forward (+)

29635341 .. 29636344

Gene Structure 1004 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g37650.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGGCCCTAGTAGTGGAAGACAAGCGTGCAGGTGCTGTGATCGTGCATGGAGCTCAAGAGTGCTACCAACAATCCATTGATCTCTTGCAAGAGATGGGGTTTCCTAAAGGTGTTTTTCCCCTGAAAGACCTAGTGGAGTGTGGAAGGGTGAAGGAAACTGGGTTTGTGTGGATGAAGCAGAAGGCGCCGTACGAGCATTACTTTGTTGGGTCGAACACGAGAGCGAGCTATGAAACTGAGGTGACTGCGTATGTGGAGAAGGGGAGGATGAAGAAGATGACTGGGATCAAGAGCAAGCTGGTGTTTCTTTGGGTGCCTATTACTGAGATGATCATGGAGGAGCCATCAACCAAGAAGATCACTTTCAAGACTCCGATGGGGATCGGGAGGTCTTTTCCGGTCACGGCTTTCATGACCGAGGAGGAGAAGCAGAAGTATATGGAGAATGGTAACGAAGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

154

Amino Acids

17.49

Weight (kDa)

6.76

Isoelectric Point (pI)

52.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	27 - 137	2.3e-30	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005672)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24130
fragaria_vesca	FvH4_5g10920 FvH4_6g37650
malus_domestica	MD04G1123900.v1.1 MD06G1118500.v1.1 MD14G1126600.v1.1
prunus_persica	Prupe.5G129600_v2.0.a1
pyrus_communis	pycom06g11000 pycom14g11120
rosa_chinensis	RchiOBHm_Chr1g0371381 RchiOBHm_Chr7g0186901
rosa_laevigata	RLG00000004807 RLG00000026968
rosa_multiflora	Rmu_sc0000809.1_g000034 Rmu_ssc0000024.1_g000030
rosa_roxburghii	Rroxscaffold_3G00267740 Rroxscaffold_4G00285750
rosa_rugosa	Rorug01G0363500.1 Rorug06G0478000
rosa_samantha	Rh1AG373500 Rh1BG337000 Rh1DG368000 Rh7AG083600 Rh7BG079200 Rh7CG084600 Rh7DG085500
rosa_wichuraiana	Rw1G032860 Rw7G007360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	20
Acc36I	ACCTGC	1 cut(s)	20
AccB1I	GGYRCC	2 cut(s)	184, 313
AclWI	GGATC	2 cut(s)	293, 389
AcyI	GRCGYC	1 cut(s)	185
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	13
AgsI	TTSAA	1 cut(s)	367
AluBI	AGCT	3 cut(s)	53, 228, 298
AluI	AGCT	3 cut(s)	53, 228, 298
Alw21I	GWGCWC	1 cut(s)	55
AlwI	GGATC	2 cut(s)	293, 389
AlwNI	CAGNNNCTG	1 cut(s)	35
AoxI	GGCC	1 cut(s)	3
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	1 cut(s)	4
AsuHPI	GGTGA	2 cut(s)	160, 253
BanI	GGYRCC	2 cut(s)	184, 313
BanII	GRGCYC	1 cut(s)	55
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BauI	CACGAG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	24
Bbv12I	GWGCWC	1 cut(s)	55
BccI	CCATC	3 cut(s)	88, 352, 370
BceAI	ACGGC	2 cut(s)	172, 420
BclI	TGATCA	1 cut(s)	330
BfaI	CTAG	2 cut(s)	8, 131
BfoI	RGCGCY	1 cut(s)	188
BfuAI	ACCTGC	1 cut(s)	20
BmgT120I	GGNCC	1 cut(s)	4
BmiI	GGNNCC	3 cut(s)	186, 315, 342
BmrI	ACTGGG	2 cut(s)	168, 291
BmuI	ACTGGG	2 cut(s)	168, 291
BpiI	GAAGAC	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	39
BsaBI	GATNNNNATC	1 cut(s)	380
BsaHI	GRCGYC	1 cut(s)	185
BsaJI	CCNNGG	1 cut(s)	417
BsaWI	WCCGGW	1 cut(s)	397
Bsc4I	CCNNNNNNNGG	1 cut(s)	13
Bse1I	ACTGG	2 cut(s)	163, 286
Bse8I	GATNNNNATC	1 cut(s)	380
BseDI	CCNNGG	1 cut(s)	417
BseGI	GGATG	2 cut(s)	177, 273
BseJI	GATNNNNATC	1 cut(s)	380
BseLI	CCNNNNNNNGG	1 cut(s)	13
BseMII	CTCAG	2 cut(s)	228, 315
BseNI	ACTGG	2 cut(s)	163, 286
BseRI	GAGGAG	3 cut(s)	353, 434, 437
BsgI	GTGCAG	1 cut(s)	48
BshFI	GGCC	1 cut(s)	5
BshNI	GGYRCC	2 cut(s)	184, 313
BsiHKAI	GWGCWC	1 cut(s)	55
BsiSI	CCGG	1 cut(s)	398
BsiWI	CGTACG	1 cut(s)	189
BslI	CCNNNNNNNGG	1 cut(s)	13
BsnI	GGCC	1 cut(s)	5
Bsp1286I	GDGCHC	1 cut(s)	55
Bsp143I	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
BspANI	GGCC	1 cut(s)	5
BspCNI	CTCAG	2 cut(s)	229, 316
BspHI	TCATGA	1 cut(s)	411
BspLI	GGNNCC	3 cut(s)	186, 315, 342
BspMI	ACCTGC	1 cut(s)	20
BspPI	GGATC	2 cut(s)	293, 389
BspT107I	GGYRCC	2 cut(s)	184, 313
BsrI	ACTGG	2 cut(s)	163, 286
BssECI	CCNNGG	1 cut(s)	417
BssMI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
BssNI	GRCGYC	1 cut(s)	185
BssSI	CACGAG	1 cut(s)	217
Bst2BI	CACGAG	1 cut(s)	217
Bst6I	CTCTTC	1 cut(s)	450
BstACI	GRCGYC	1 cut(s)	185
BstC8I	GCNNGC	3 cut(s)	27, 226, 296
BstDEI	CTNAG	2 cut(s)	237, 324
BstF5I	GGATG	2 cut(s)	177, 273
BstH2I	RGCGCY	1 cut(s)	188
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	6 cut(s)	42, 82, 288, 333, 360, 384
BstMBI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 193
BstV2I	GAAGAC	1 cut(s)	24
BsuRI	GGCC	1 cut(s)	5
BtsCI	GGATG	2 cut(s)	177, 273
BveI	ACCTGC	1 cut(s)	20
Cac8I	GCNNGC	3 cut(s)	27, 226, 296
CaiI	CAGNNNCTG	1 cut(s)	35
CciI	TCATGA	1 cut(s)	411
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	4
Csp6I	GTAC	1 cut(s)	190
CviAII	CATG	3 cut(s)	47, 334, 412
CviJI	RGCY	6 cut(s)	5, 53, 228, 298, 343, 407
CviKI_1	RGCY	6 cut(s)	5, 53, 228, 298, 343, 407
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	237, 324
DinI	GGCGCC	1 cut(s)	186
DpnI	GATC	6 cut(s)	41, 81, 287, 332, 359, 383
DpnII	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
Eam1104I	CTCTTC	1 cut(s)	450
EarI	CTCTTC	1 cut(s)	450
Ecl136II	GAGCTC	1 cut(s)	53
Eco24I	GRGCYC	1 cut(s)	55
Eco53kI	GAGCTC	1 cut(s)	53
EcoICRI	GAGCTC	1 cut(s)	53
EcoT38I	GRGCYC	1 cut(s)	55
EgeI	GGCGCC	1 cut(s)	186
EheI	GGCGCC	1 cut(s)	186
FaeI	CATG	3 cut(s)	50, 337, 415
FaiI	YATR	7 cut(s)	48, 231, 252, 335, 413, 438, 440
FatI	CATG	3 cut(s)	46, 333, 411
FbaI	TGATCA	1 cut(s)	330
FokI	GGATG	2 cut(s)	184, 280
FriOI	GRGCYC	1 cut(s)	55
FspBI	CTAG	2 cut(s)	8, 131
GlaI	GCGC	1 cut(s)	186
HaeII	RGCGCY	1 cut(s)	188
HaeIII	GGCC	1 cut(s)	5
HapII	CCGG	1 cut(s)	398
HhaI	GCGC	1 cut(s)	187
Hin1I	GRCGYC	1 cut(s)	185
Hin1II	CATG	3 cut(s)	50, 337, 415
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HinfI	GANTC	1 cut(s)	370
HpaII	CCGG	1 cut(s)	398
HphI	GGTGA	2 cut(s)	160, 253
Hpy188I	TCNGA	1 cut(s)	375
Hpy188III	TCNNGA	5 cut(s)	56, 289, 367, 385, 412
HpyAV	CCTTC	4 cut(s)	138, 145, 175, 253
HpyCH4V	TGCA	3 cut(s)	29, 46, 88
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 193
HpyF3I	CTNAG	2 cut(s)	237, 324
Hsp92I	GRCGYC	1 cut(s)	185
Hsp92II	CATG	3 cut(s)	50, 337, 415
HspAI	GCGC	1 cut(s)	185
KasI	GGCGCC	1 cut(s)	184
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
LmnI	GCTCC	2 cut(s)	50, 340
LpnPI	CCDG	6 cut(s)	15, 134, 144, 267, 284, 411
MaeI	CTAG	2 cut(s)	8, 131
MaeIII	GTNAC	3 cut(s)	241, 400, 449
MalI	GATC	6 cut(s)	41, 81, 287, 332, 359, 383
MboI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
MboII	GAAGA	4 cut(s)	29, 283, 286, 367
MhlI	GDGCHC	1 cut(s)	55
Mly113I	GGCGCC	1 cut(s)	185
MlyI	GAGTC	1 cut(s)	364
MnlI	CCTC	6 cut(s)	232, 258, 331, 381, 412, 415
MspI	CCGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	2 cut(s)	184, 193
NarI	GGCGCC	1 cut(s)	185
NdeII	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
NlaIII	CATG	3 cut(s)	50, 337, 415
NlaIV	GGNNCC	3 cut(s)	186, 315, 342
NmuCI	GTSAC	2 cut(s)	241, 400
PagI	TCATGA	1 cut(s)	411
PaqCI	CACCTGC	1 cut(s)	20
Pfl23II	CGTACG	1 cut(s)	189
PleI	GAGTC	1 cut(s)	364
PluTI	GGCGCC	1 cut(s)	188
PpsI	GAGTC	1 cut(s)	364
Psp124BI	GAGCTC	1 cut(s)	55
PspLI	CGTACG	1 cut(s)	189
PspN4I	GGNNCC	3 cut(s)	186, 315, 342
PspPI	GGNCC	1 cut(s)	4
PstNI	CAGNNNCTG	1 cut(s)	35
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SacI	GAGCTC	1 cut(s)	55
Sau3AI	GATC	6 cut(s)	39, 79, 285, 330, 357, 381
Sau96I	GGNCC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	364
SduI	GDGCHC	1 cut(s)	55
SetI	ASST	8 cut(s)	34, 55, 112, 132, 230, 243, 300, 392
SfoI	GGCGCC	1 cut(s)	186
SmlI	CTYRAG	1 cut(s)	54
SmoI	CTYRAG	1 cut(s)	54
SspDI	GGCGCC	1 cut(s)	184
SspMI	CTAG	2 cut(s)	8, 131
SstI	GAGCTC	1 cut(s)	55
TaqI	TCGA	1 cut(s)	212
TaqII	GACCGA	1 cut(s)	431
TseFI	GTSAC	2 cut(s)	241, 400
Tsp45I	GTSAC	2 cut(s)	241, 400
TspDTI	ATGAA	4 cut(s)	188, 246, 284, 400
XspI	CTAG	2 cut(s)	8, 131

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.