AT4G24500

Hydroxyproline-rich glycoprotein family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
4
OG0014057
Physical Location & Seq
Forward (+)
12658433 .. 12660667
2235 bp
Loading structure...
UTR
Exon/CDS
Intron
AT4G24500.3

Sequence Viewer

Length: 960 bp
ATGGAAGATTCAGAGAAAAGAAAACAGATGTTAAAAGCAATGCGAATGGAAGCTGCAGCGCAGAATGATGATGATGCTACTACAGGTACTGAAACATCTATGAGCACAGGTCACCTCTCCAATCCATTGGCAGAGACATCCAATCACCAGCAGGATTCATTTGAAACGCAAAGGTTTGATTATTATACCGATCCCATGGCTGCTTATTCTAGTTTCAAGAAAAACAAGACCCCTAAGCAACAATACATCTCATCTCCTAGTCATCAAGGAAGCTCTCCTGTACCACCTCAGTTTCCACCATCAGTTCCTCCAGGATCATTATGTAGTGAGTATCAGGCACAGACCAATCATGGTGGCTTTCATGCAGCTCATTATGAACCAAGAGGGATGGCACATCTTTCACCCTCACACAGAGGTCCACCCGCCGGTTGGAATAACAACTTTAGGCCTCCACCAGTTAACCATTCAGGTCCACCTCAATGGGTACCTCGCCCTTTTCCATTCTCTCAAGAAATGCCGAACATGGGGAATAATAGATTTGGTGGTCGAGGCAGCTACAACAATACTCCTCCACAGTTTTCCAATTATGGACGACAAAATGCAAACTGGGGTGGAAACACGTATCCTAACTCAGGAAGAGGCAGAAGTCGAGGACGCGGTATGAACACAAGCTTTGGGAGAGATGGAGGAAGAAGACCCATGGAACCAGGGGCAGAACGATTTTACTCCAACTCTATGGCTGAAGATCCATGGAAGCATCTTAAGCCAGTCTTATGGAAGAATTGCTCAGATGCTTCGAGCAGCAGCTCAACAGGTCAAGCCTGGCTTCCCAAGTCTATAGCACCAAAAAAATCTGTGACCTCAGAAGCTACCCACAAAACTAGCAGTAATCAGCAGAGCCTTGCTGAGTACCTTGCTGCTTCTCTAGATGGTGCTACATGCGATGAGTCAAGCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000380 GO:0000381 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0007623 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009605 GO:0009628 GO:0009649 GO:0009651 GO:0009889 GO:0009892 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010817 GO:0010866 GO:0010921 GO:0014070 GO:0016020 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035303 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046890 GO:0048024 GO:0048511 GO:0048519 GO:0050684 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051252 GO:0051336 GO:0051716 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070887 GO:0070918 GO:0071071 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071944 GO:0080090 GO:0090207 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1901703 GO:1903311 GO:1903725 GO:1903730 GO:2000012
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MPLKIP

Protein Analysis

319

Amino Acids

35.05

Weight (kDa)

9.03

Isoelectric Point (pI)

57.04

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0014057)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G24500 AT4G24500 AT4G24500
fragaria_vesca FvH4_5g34870
malus_domestica MD08G1199700.v1.1
prunus_persica Prupe.1G533200_v2.0.a1
pyrus_communis pycom08g17330 pycom15g34700
rosa_chinensis RchiOBHm_Chr7g0235791
rosa_laevigata RLG00000001139
rosa_roxburghii Rroxscaffold_3G00225630
rosa_rugosa Rorug07G0292800
rosa_samantha Rh7AG447700 Rh7BG419900 Rh7CG468200 Rh7DG436700
rosa_wichuraiana Rw7G037200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 484
AccB1I GGYRCC 1 cut(s) 484
AccII CGCG 1 cut(s) 657
AciI CCGC 2 cut(s) 423, 657
AclWI GGATC 3 cut(s) 185, 322, 740
AcuI CTGAAG 1 cut(s) 762
AfaI GTAC 4 cut(s) 88, 282, 486, 911
AfiI CCNNNNNNNGG 4 cut(s) 425, 429, 524, 632
AflII CTTAAG 1 cut(s) 761
AflIII ACRYGT 1 cut(s) 618
AgsI TTSAA 2 cut(s) 164, 217
AjnI CCWGG 3 cut(s) 310, 706, 821
AluBI AGCT 7 cut(s) 53, 273, 368, 555, 672, 807, 869
AluI AGCT 7 cut(s) 53, 273, 368, 555, 672, 807, 869
Alw21I GWGCWC 1 cut(s) 107
Alw26I GTCTC 1 cut(s) 128
AlwI GGATC 3 cut(s) 185, 322, 740
AlwNI CAGNNNCTG 1 cut(s) 89
AoxI GGCC 1 cut(s) 446
ApeKI GCWGC 8 cut(s) 53, 56, 200, 365, 552, 801, 804, 917
Asp718I GGTACC 1 cut(s) 484
AspLEI GCGC 1 cut(s) 61
AspS9I GGNCC 2 cut(s) 416, 470
AsuHPI GGTGA 3 cut(s) 104, 137, 393
AvaII GGWCC 2 cut(s) 416, 470
BanI GGYRCC 1 cut(s) 484
BbsI GAAGAC 1 cut(s) 700
Bbv12I GWGCWC 1 cut(s) 107
BbvI GCAGC 8 cut(s) 40, 68, 187, 377, 564, 813, 816, 904
BccI CCATC 4 cut(s) 307, 382, 677, 923
BciT130I CCWGG 3 cut(s) 312, 708, 823
BciVI GTATCC 1 cut(s) 633
BcoDI GTCTC 1 cut(s) 128
BfaI CTAG 4 cut(s) 210, 258, 882, 926
BfmI CTRYAG 3 cut(s) 54, 81, 837
BfrI CTTAAG 1 cut(s) 761
BfuI GTATCC 1 cut(s) 633
BisI GCNGC 8 cut(s) 54, 57, 201, 366, 553, 802, 805, 918
BlsI GCNGC 8 cut(s) 55, 58, 202, 367, 554, 803, 806, 919
Bme1390I CCNGG 3 cut(s) 312, 708, 823
Bme18I GGWCC 2 cut(s) 416, 470
BmgT120I GGNCC 2 cut(s) 416, 470
BmiI GGNNCC 2 cut(s) 486, 705
BmrFI CCNGG 3 cut(s) 312, 708, 823
BmrI ACTGGG 1 cut(s) 616
BmsI GCATC 3 cut(s) 64, 766, 781
BmuI ACTGGG 1 cut(s) 616
BpiI GAAGAC 1 cut(s) 700
BpmI CTGGAG 1 cut(s) 294
Bpu10I CCTNAGC 1 cut(s) 234
BpuEI CTTGAG 1 cut(s) 492
BsaAI YACGTR 1 cut(s) 621
BsaJI CCNNGG 4 cut(s) 195, 699, 707, 749
Bsc4I CCNNNNNNNGG 4 cut(s) 425, 429, 524, 632
Bse118I RCCGGY 1 cut(s) 425
Bse1I ACTGG 3 cut(s) 455, 611, 767
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 3 cut(s) 312, 708, 823
BseDI CCNNGG 4 cut(s) 195, 699, 707, 749
BseGI GGATG 2 cut(s) 137, 393
BseLI CCNNNNNNNGG 4 cut(s) 425, 429, 524, 632
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 5 cut(s) 302, 645, 801, 876, 897
BseNI ACTGG 3 cut(s) 455, 611, 767
BseRI GAGGAG 1 cut(s) 558
BseXI GCAGC 8 cut(s) 40, 68, 187, 377, 564, 813, 816, 904
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 1 cut(s) 448
BshNI GGYRCC 1 cut(s) 484
BsiHKAI GWGCWC 1 cut(s) 107
BsiSI CCGG 1 cut(s) 426
BslI CCNNNNNNNGG 4 cut(s) 425, 429, 524, 632
BsmAI GTCTC 1 cut(s) 128
BsnI GGCC 1 cut(s) 448
Bsp1286I GDGCHC 1 cut(s) 107
Bsp143I GATC 3 cut(s) 190, 314, 745
Bsp19I CCATGG 3 cut(s) 195, 699, 749
BspACI CCGC 2 cut(s) 423, 657
BspANI GGCC 1 cut(s) 448
BspCNI CTCAG 5 cut(s) 301, 644, 800, 875, 898
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 2 cut(s) 486, 705
BspMAI CTGCAG 1 cut(s) 58
BspPI GGATC 3 cut(s) 185, 322, 740
BspT107I GGYRCC 1 cut(s) 484
BspTI CTTAAG 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 45
BsrFI RCCGGY 1 cut(s) 425
BsrI ACTGG 3 cut(s) 455, 611, 767
BssAI RCCGGY 1 cut(s) 425
BssECI CCNNGG 4 cut(s) 195, 699, 707, 749
BssMI GATC 3 cut(s) 190, 314, 745
BssT1I CCWWGG 3 cut(s) 195, 699, 749
Bst2UI CCWGG 3 cut(s) 312, 708, 823
Bst4CI ACNGT 1 cut(s) 576
Bst6I CTCTTC 1 cut(s) 631
BstAFI CTTAAG 1 cut(s) 761
BstBAI YACGTR 1 cut(s) 621
BstDEI CTNAG 6 cut(s) 234, 288, 631, 787, 862, 906
BstDSI CCRYGG 3 cut(s) 195, 699, 749
BstEII GGTNACC 1 cut(s) 110
BstENI CCTNNNNNAGG 1 cut(s) 630
BstF5I GGATG 2 cut(s) 137, 393
BstFNI CGCG 1 cut(s) 657
BstHHI GCGC 1 cut(s) 61
BstKTI GATC 3 cut(s) 193, 317, 748
BstMAI GTCTC 1 cut(s) 128
BstMBI GATC 3 cut(s) 190, 314, 745
BstMWI GCNNNNNNNGC 1 cut(s) 763
BstNI CCWGG 3 cut(s) 312, 708, 823
BstNSI RCATGY 1 cut(s) 942
BstPI GGTNACC 1 cut(s) 110
BstSCI CCNGG 3 cut(s) 310, 706, 821
BstSFI CTRYAG 3 cut(s) 54, 81, 837
BstUI CGCG 1 cut(s) 657
BstV1I GCAGC 8 cut(s) 40, 68, 187, 377, 564, 813, 816, 904
BstV2I GAAGAC 1 cut(s) 700
BstX2I RGATCY 1 cut(s) 745
BstXI CCANNNNNNTGG 4 cut(s) 127, 480, 736, 774
BstYI RGATCY 1 cut(s) 745
BsuI GTATCC 1 cut(s) 633
BsuRI GGCC 1 cut(s) 448
BtgI CCRYGG 3 cut(s) 195, 699, 749
BtsCI GGATG 2 cut(s) 137, 393
CaiI CAGNNNCTG 1 cut(s) 89
CfoI GCGC 1 cut(s) 61
Cfr10I RCCGGY 1 cut(s) 425
Cfr13I GGNCC 2 cut(s) 416, 470
CseI GACGC 1 cut(s) 663
Csp6I GTAC 4 cut(s) 87, 281, 485, 910
CspCI CAANNNNNGTGG 2 cut(s) 334, 369
CviAII CATG 7 cut(s) 196, 350, 362, 523, 700, 750, 939
CviQI GTAC 4 cut(s) 87, 281, 485, 910
DdeI CTNAG 6 cut(s) 234, 288, 631, 787, 862, 906
DpnI GATC 3 cut(s) 192, 316, 747
DpnII GATC 3 cut(s) 190, 314, 745
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Eco130I CCWWGG 3 cut(s) 195, 699, 749
Eco147I AGGCCT 1 cut(s) 448
Eco47I GGWCC 2 cut(s) 416, 470
Eco57I CTGAAG 1 cut(s) 762
Eco91I GGTNACC 1 cut(s) 110
EcoNI CCTNNNNNAGG 1 cut(s) 630
EcoO65I GGTNACC 1 cut(s) 110
EcoRII CCWGG 3 cut(s) 310, 706, 821
EcoT14I CCWWGG 3 cut(s) 195, 699, 749
ErhI CCWWGG 3 cut(s) 195, 699, 749
FaeI CATG 7 cut(s) 199, 353, 365, 526, 703, 753, 942
FalI AAGNNNNNCTT 4 cut(s) 755, 787, 810, 842
FatI CATG 7 cut(s) 195, 349, 361, 522, 699, 749, 938
FauI CCCGC 1 cut(s) 430
Fnu4HI GCNGC 8 cut(s) 54, 57, 201, 366, 553, 802, 805, 918
FokI GGATG 2 cut(s) 124, 400
Fsp4HI GCNGC 8 cut(s) 54, 57, 201, 366, 553, 802, 805, 918
FspBI CTAG 4 cut(s) 210, 258, 882, 926
GlaI GCGC 1 cut(s) 60
GluI GCNGC 8 cut(s) 54, 57, 201, 366, 553, 802, 805, 918
GsuI CTGGAG 1 cut(s) 294
HaeIII GGCC 1 cut(s) 448
HapII CCGG 1 cut(s) 426
HgaI GACGC 1 cut(s) 663
HhaI GCGC 1 cut(s) 61
Hin1II CATG 7 cut(s) 199, 353, 365, 526, 703, 753, 942
Hin6I GCGC 1 cut(s) 59
HinP1I GCGC 1 cut(s) 59
HincII GTYRAC 1 cut(s) 460
HindII GTYRAC 1 cut(s) 460
HindIII AAGCTT 1 cut(s) 670
HinfI GANTC 3 cut(s) 8, 155, 947
HpaI GTTAAC 1 cut(s) 460
HpaII CCGG 1 cut(s) 426
HphI GGTGA 3 cut(s) 104, 137, 393
Hpy166II GTNNAC 3 cut(s) 419, 460, 473
Hpy188I TCNGA 3 cut(s) 13, 790, 865
Hpy188III TCNNGA 4 cut(s) 217, 509, 633, 926
Hpy8I GTNNAC 3 cut(s) 419, 460, 473
HpyCH4III ACNGT 1 cut(s) 576
HpyCH4IV ACGT 1 cut(s) 620
HpyCH4V TGCA 3 cut(s) 56, 365, 602
HpyF10VI GCNNNNNNNGC 1 cut(s) 763
HpyF3I CTNAG 6 cut(s) 234, 288, 631, 787, 862, 906
HpySE526I ACGT 1 cut(s) 620
Hsp92II CATG 7 cut(s) 199, 353, 365, 526, 703, 753, 942
HspAI GCGC 1 cut(s) 59
KpnI GGTACC 1 cut(s) 488
KspAI GTTAAC 1 cut(s) 460
Kzo9I GATC 3 cut(s) 190, 314, 745
Lsp1109I GCAGC 8 cut(s) 40, 68, 187, 377, 564, 813, 816, 904
LweI GCATC 3 cut(s) 64, 766, 781
MaeI CTAG 4 cut(s) 210, 258, 882, 926
MaeII ACGT 1 cut(s) 620
MaeIII GTNAC 2 cut(s) 110, 856
MalI GATC 3 cut(s) 192, 316, 747
MboI GATC 3 cut(s) 190, 314, 745
MboII GAAGA 6 cut(s) 17, 648, 702, 705, 755, 790
MflI RGATCY 1 cut(s) 745
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 3 cut(s) 583, 781, 955
MlyI GAGTC 1 cut(s) 956
MmeI TCCRAC 2 cut(s) 410, 753
MseI TTAA 4 cut(s) 32, 459, 762, 958
MslI CAYNNNNRTG 1 cut(s) 478
MspCI CTTAAG 1 cut(s) 761
MspI CCGG 1 cut(s) 426
MspR9I CCNGG 3 cut(s) 312, 708, 823
MvaI CCWGG 3 cut(s) 312, 708, 823
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 1 cut(s) 763
NcoI CCATGG 3 cut(s) 195, 699, 749
NdeII GATC 3 cut(s) 190, 314, 745
NlaIII CATG 7 cut(s) 199, 353, 365, 526, 703, 753, 942
NlaIV GGNNCC 2 cut(s) 486, 705
NmuCI GTSAC 2 cut(s) 110, 856
NspI RCATGY 1 cut(s) 942
PceI AGGCCT 1 cut(s) 448
PfeI GAWTC 2 cut(s) 8, 155
PfoI TCCNGGA 1 cut(s) 310
PkrI GCNGC 8 cut(s) 55, 58, 202, 367, 554, 803, 806, 919
PleI GAGTC 1 cut(s) 955
PpsI GAGTC 1 cut(s) 955
Ppu21I YACGTR 1 cut(s) 621
Psp6I CCWGG 3 cut(s) 310, 706, 821
PspEI GGTNACC 1 cut(s) 110
PspGI CCWGG 3 cut(s) 310, 706, 821
PspN4I GGNNCC 2 cut(s) 486, 705
PspPI GGNCC 2 cut(s) 416, 470
PstI CTGCAG 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 89
PsuI RGATCY 1 cut(s) 745
RsaI GTAC 4 cut(s) 88, 282, 486, 911
RsaNI GTAC 4 cut(s) 87, 281, 485, 910
RseI CAYNNNNRTG 1 cut(s) 478
SaqAI TTAA 4 cut(s) 32, 459, 762, 958
SatI GCNGC 8 cut(s) 54, 57, 201, 366, 553, 802, 805, 918
Sau3AI GATC 3 cut(s) 190, 314, 745
Sau96I GGNCC 2 cut(s) 416, 470
SchI GAGTC 1 cut(s) 956
ScrFI CCNGG 3 cut(s) 312, 708, 823
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 3 cut(s) 64, 766, 781
SfcI CTRYAG 3 cut(s) 54, 81, 837
SinI GGWCC 2 cut(s) 416, 470
SmiMI CAYNNNNRTG 1 cut(s) 478
SmlI CTYRAG 2 cut(s) 507, 761
SmoI CTYRAG 2 cut(s) 507, 761
Sse9I AATT 3 cut(s) 583, 781, 955
SseBI AGGCCT 1 cut(s) 448
SsiI CCGC 2 cut(s) 423, 657
SspMI CTAG 4 cut(s) 210, 258, 882, 926
StuI AGGCCT 1 cut(s) 448
StyD4I CCNGG 3 cut(s) 310, 706, 821
StyI CCWWGG 3 cut(s) 195, 699, 749
TaaI ACNGT 1 cut(s) 576
TaiI ACGT 1 cut(s) 623
TaqI TCGA 3 cut(s) 547, 649, 797
TasI AATT 3 cut(s) 583, 781, 955
TfiI GAWTC 2 cut(s) 8, 155
Tru1I TTAA 4 cut(s) 32, 459, 762, 958
Tru9I TTAA 4 cut(s) 32, 459, 762, 958
TseFI GTSAC 2 cut(s) 110, 856
TseI GCWGC 8 cut(s) 53, 56, 200, 365, 552, 801, 804, 917
Tsp45I GTSAC 2 cut(s) 110, 856
TspDTI ATGAA 4 cut(s) 147, 350, 390, 677
Vha464I CTTAAG 1 cut(s) 761
VpaK11BI GGWCC 2 cut(s) 416, 470
XagI CCTNNNNNAGG 1 cut(s) 630
XbaI TCTAGA 1 cut(s) 925
XceI RCATGY 1 cut(s) 942
XcmI CCANNNNNNNNNTGG 1 cut(s) 426
XspI CTAG 4 cut(s) 210, 258, 882, 926
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.