Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0014057

Physical Location & Seq

Genomic Coordinates Reverse (-)

47647806 .. 47650693

Gene Structure 2888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG419900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGCCTCCTCCACCTCATCAGTTTCAGAGCAATTACTCACCAGACCAGAGAATGTACCAACAAAACTTTGTTCCTCAGAGAAATCCCACAGGAATAGTGAGACCTTTTGTCATGCATCATACAAATCCACCTGAAGTCTGGAATGGAGCTCAAGGTCCGGCGAGTTATAATCTCCCTCCTGATCCCTCAAGAGAAAGCAGTTTTCCTGGCCCTAGATTTAGACCACCAGGTAGCCCCGGATTTAGACCACCAGGAAACCCCGGATTTGGGCCACCGGGAAGCCCCGGATTTGGGCCACCCGGAAGCTCGGGATTTGGACCACCAGGAAGCCCCGGATTTGGGCCACCGGGAAGCCCCGGATTTGGACCACCAGGAAGCCCAGGATTTGGACCACCAGGAAGCCCCGGATTTGGGCCACCAGGAAGCCCTGGATTTGGACCACCCAGAAGCCCTGGGTTTGGTTCCAATACTCGGCAAGGTAGGGGGCACTGGGTCAGTCATAGTCCAAGCCCTCATTCAGTACATGGAGGTAGTCATAGTCCTAGATCAAGTTCAGGTAGAGGTAGGGGGCGCTCTGGGTCAGGATGGCGAGGTGGACGTGGGCGGGGTTCTGATGGTCGTCCATTGGGTCCAGAACAGTTTTACAATGCTTCCATGGTTGAAGAAGATCCATGGAAAGGTTTGTCACCTGTTACATGGAAAGCTCTGCCACCTGTTATCCGGAAGGGGGTAGATACTCCCTTCAATGGTAACAAAAATAAAGCAAGCGTTTCAGAAGGTTCAAACAGGTCCACTCCACAGCCAAACTTGGCAGAATACTTGGCTGCCTCATTGAATGAAACTATTAATGAGGCATCAACCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000380 GO:0000381 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0007623 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009605 GO:0009628 GO:0009649 GO:0009651 GO:0009889 GO:0009892 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010817 GO:0010866 GO:0010921 GO:0014070 GO:0016020 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035303 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046890 GO:0048024 GO:0048511 GO:0048519 GO:0050684 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051252 GO:0051336 GO:0051716 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070887 GO:0070918 GO:0071071 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071944 GO:0080090 GO:0090207 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1901703 GO:1903311 GO:1903725 GO:1903730 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPLKIP

Protein Analysis

288

Amino Acids

29.92

Weight (kDa)

10.83

Isoelectric Point (pI)

67.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24500 AT4G24500 AT4G24500
fragaria_vesca	FvH4_5g34870
malus_domestica	MD08G1199700.v1.1
prunus_persica	Prupe.1G533200_v2.0.a1
pyrus_communis	pycom08g17330 pycom15g34700
rosa_chinensis	RchiOBHm_Chr7g0235791
rosa_laevigata	RLG00000001139
rosa_roxburghii	Rroxscaffold_3G00225630
rosa_rugosa	Rorug07G0292800
rosa_samantha	Rh7AG447700 Rh7BG419900 Rh7CG468200 Rh7DG436700
rosa_wichuraiana	Rw7G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	168
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccIII	TCCGGA	1 cut(s)	720
AciI	CCGC	1 cut(s)	604
AclWI	GGATC	2 cut(s)	176, 662
AcuI	CTGAAG	1 cut(s)	153
AfaI	GTAC	2 cut(s)	56, 522
AgsI	TTSAA	4 cut(s)	662, 745, 783, 835
AhdI	GACNNNNNGTC	1 cut(s)	107
AjiI	CACGTC	1 cut(s)	599
AjuI	GAANNNNNNNTTGG	2 cut(s)	499, 531
AluBI	AGCT	3 cut(s)	149, 306, 704
AluI	AGCT	3 cut(s)	149, 306, 704
Alw21I	GWGCWC	1 cut(s)	151
Alw26I	GTCTC	1 cut(s)	94
AlwI	GGATC	2 cut(s)	176, 662
Ama87I	CYCGRG	1 cut(s)	307
Aor13HI	TCCGGA	1 cut(s)	720
AoxI	GGCC	5 cut(s)	208, 269, 293, 341, 413
ApeKI	GCWGC	1 cut(s)	824
AseI	ATTAAT	1 cut(s)	846
AspLEI	GCGC	1 cut(s)	573
AsuC2I	CCSGG	9 cut(s)	237, 261, 276, 285, 300, 333, 348, 357, 405
AsuHPI	GGTGA	2 cut(s)	30, 678
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	7 cut(s)	155, 317, 365, 389, 437, 629, 789
BaeGI	GKGCMC	1 cut(s)	489
BanII	GRGCYC	1 cut(s)	151
Bbv12I	GWGCWC	1 cut(s)	151
BbvI	GCAGC	1 cut(s)	811
BccI	CCATC	2 cut(s)	579, 608
BcgI	CGANNNNNNTGC	1 cut(s)	843
BcnI	CCSGG	9 cut(s)	237, 261, 276, 285, 300, 333, 348, 357, 405
BcoDI	GTCTC	1 cut(s)	94
BfaI	CTAG	2 cut(s)	213, 543
BfoI	RGCGCY	1 cut(s)	574
BisI	GCNGC	1 cut(s)	825
BlsI	GCNGC	1 cut(s)	826
Bme18I	GGWCC	7 cut(s)	155, 317, 365, 389, 437, 629, 789
BmeRI	GACNNNNNGTC	1 cut(s)	107
BmeT110I	CYCGRG	1 cut(s)	307
BmgBI	CACGTC	1 cut(s)	599
BmiI	GGNNCC	2 cut(s)	463, 630
BmrI	ACTGGG	1 cut(s)	499
BmsI	GCATC	2 cut(s)	124, 863
BmuI	ACTGGG	1 cut(s)	499
BpuEI	CTTGAG	2 cut(s)	135, 172
BpuMI	CCSGG	9 cut(s)	237, 261, 276, 285, 300, 333, 348, 357, 405
BsaI	GGTCTC	1 cut(s)	94
BsaWI	WCCGGW	1 cut(s)	720
Bse1I	ACTGG	1 cut(s)	494
BseAI	TCCGGA	1 cut(s)	720
BseGI	GGATG	1 cut(s)	590
BseMII	CTCAG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	489
BseXI	GCAGC	1 cut(s)	811
BshFI	GGCC	5 cut(s)	210, 271, 295, 343, 415
BsiHKAI	GWGCWC	1 cut(s)	151
BsiHKCI	CYCGRG	1 cut(s)	307
BsmAI	GTCTC	1 cut(s)	94
BsnI	GGCC	5 cut(s)	210, 271, 295, 343, 415
Bso31I	GGTCTC	1 cut(s)	94
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	2 cut(s)	151, 489
Bsp13I	TCCGGA	1 cut(s)	720
Bsp143I	GATC	3 cut(s)	181, 545, 667
Bsp19I	CCATGG	2 cut(s)	654, 671
BspACI	CCGC	1 cut(s)	604
BspANI	GGCC	5 cut(s)	210, 271, 295, 343, 415
BspCNI	CTCAG	1 cut(s)	88
BspEI	TCCGGA	1 cut(s)	720
BspLI	GGNNCC	2 cut(s)	463, 630
BspPI	GGATC	2 cut(s)	176, 662
BspTNI	GGTCTC	1 cut(s)	94
BsrI	ACTGG	1 cut(s)	494
BssMI	GATC	3 cut(s)	181, 545, 667
BssT1I	CCWWGG	2 cut(s)	654, 671
Bst4CI	ACNGT	1 cut(s)	639
BstC8I	GCNNGC	1 cut(s)	766
BstDEI	CTNAG	1 cut(s)	75
BstDSI	CCRYGG	2 cut(s)	654, 671
BstF5I	GGATG	1 cut(s)	590
BstH2I	RGCGCY	1 cut(s)	574
BstHHI	GCGC	1 cut(s)	573
BstKTI	GATC	3 cut(s)	184, 548, 670
BstMAI	GTCTC	1 cut(s)	94
BstMBI	GATC	3 cut(s)	181, 545, 667
BstSLI	GKGCMC	1 cut(s)	489
BstV1I	GCAGC	1 cut(s)	811
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
BsuRI	GGCC	5 cut(s)	210, 271, 295, 343, 415
BtgI	CCRYGG	2 cut(s)	654, 671
BtrI	CACGTC	1 cut(s)	599
BtsCI	GGATG	1 cut(s)	590
BtsIMutI	CAGTG	1 cut(s)	487
Cac8I	GCNNGC	1 cut(s)	766
CfoI	GCGC	1 cut(s)	573
CsiI	ACCWGGT	1 cut(s)	226
Csp6I	GTAC	2 cut(s)	55, 521
CviAII	CATG	5 cut(s)	112, 524, 655, 672, 696
CviQI	GTAC	2 cut(s)	55, 521
DdeI	CTNAG	1 cut(s)	75
DpnI	GATC	3 cut(s)	183, 547, 669
DpnII	GATC	3 cut(s)	181, 545, 667
DriI	GACNNNNNGTC	1 cut(s)	107
Eam1105I	GACNNNNNGTC	1 cut(s)	107
Ecl136II	GAGCTC	1 cut(s)	149
Eco130I	CCWWGG	2 cut(s)	654, 671
Eco24I	GRGCYC	1 cut(s)	151
Eco31I	GGTCTC	1 cut(s)	94
Eco47I	GGWCC	7 cut(s)	155, 317, 365, 389, 437, 629, 789
Eco53kI	GAGCTC	1 cut(s)	149
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	149
EcoT14I	CCWWGG	2 cut(s)	654, 671
EcoT22I	ATGCAT	1 cut(s)	117
EcoT38I	GRGCYC	1 cut(s)	151
ErhI	CCWWGG	2 cut(s)	654, 671
FaeI	CATG	5 cut(s)	115, 527, 658, 675, 699
FaiI	YATR	9 cut(s)	113, 120, 168, 501, 525, 537, 656, 673, 697
FatI	CATG	5 cut(s)	111, 523, 654, 671, 695
FauI	CCCGC	1 cut(s)	597
Fnu4HI	GCNGC	1 cut(s)	825
FokI	GGATG	1 cut(s)	597
FriOI	GRGCYC	1 cut(s)	151
Fsp4HI	GCNGC	1 cut(s)	825
FspBI	CTAG	2 cut(s)	213, 543
GlaI	GCGC	1 cut(s)	572
GluI	GCNGC	1 cut(s)	825
HaeII	RGCGCY	1 cut(s)	574
HaeIII	GGCC	5 cut(s)	210, 271, 295, 343, 415
HhaI	GCGC	1 cut(s)	573
Hin1II	CATG	5 cut(s)	115, 527, 658, 675, 699
Hin6I	GCGC	1 cut(s)	571
HinP1I	GCGC	1 cut(s)	571
HphI	GGTGA	2 cut(s)	30, 678
Hpy166II	GTNNAC	2 cut(s)	596, 792
Hpy188I	TCNGA	4 cut(s)	27, 78, 613, 775
Hpy188III	TCNNGA	7 cut(s)	139, 179, 189, 309, 582, 632, 721
Hpy8I	GTNNAC	2 cut(s)	596, 792
HpyAV	CCTTC	3 cut(s)	718, 751, 770
HpyCH4III	ACNGT	1 cut(s)	639
HpyCH4IV	ACGT	1 cut(s)	598
HpyCH4V	TGCA	1 cut(s)	115
HpyF3I	CTNAG	1 cut(s)	75
HpySE526I	ACGT	1 cut(s)	598
Hsp92II	CATG	5 cut(s)	115, 527, 658, 675, 699
HspAI	GCGC	1 cut(s)	571
Kpn2I	TCCGGA	1 cut(s)	720
Kzo9I	GATC	3 cut(s)	181, 545, 667
LmnI	GCTCC	1 cut(s)	146
Lsp1109I	GCAGC	1 cut(s)	811
LweI	GCATC	2 cut(s)	124, 863
MabI	ACCWGGT	1 cut(s)	226
MaeI	CTAG	2 cut(s)	213, 543
MaeII	ACGT	1 cut(s)	598
MaeIII	GTNAC	3 cut(s)	684, 691, 749
MalI	GATC	3 cut(s)	183, 547, 669
MboI	GATC	3 cut(s)	181, 545, 667
MboII	GAAGA	2 cut(s)	674, 677
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	2 cut(s)	151, 489
MluCI	AATT	1 cut(s)	31
Mph1103I	ATGCAT	1 cut(s)	117
MroI	TCCGGA	1 cut(s)	720
MseI	TTAA	1 cut(s)	846
NciI	CCSGG	9 cut(s)	237, 261, 276, 285, 300, 333, 348, 357, 405
NcoI	CCATGG	2 cut(s)	654, 671
NdeII	GATC	3 cut(s)	181, 545, 667
NlaIII	CATG	5 cut(s)	115, 527, 658, 675, 699
NlaIV	GGNNCC	2 cut(s)	463, 630
NmeAIII	GCCGAG	1 cut(s)	451
NmuCI	GTSAC	1 cut(s)	684
NsiI	ATGCAT	1 cut(s)	117
PasI	CCCWGGG	1 cut(s)	452
PflMI	CCANNNNNTGG	1 cut(s)	386
PkrI	GCNGC	1 cut(s)	826
PshBI	ATTAAT	1 cut(s)	846
PsiI	TTATAA	1 cut(s)	168
Psp124BI	GAGCTC	1 cut(s)	151
PspN4I	GGNNCC	2 cut(s)	463, 630
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	2 cut(s)	56, 522
RsaNI	GTAC	2 cut(s)	55, 521
SacI	GAGCTC	1 cut(s)	151
SaqAI	TTAA	1 cut(s)	846
SatI	GCNGC	1 cut(s)	825
Sau3AI	GATC	3 cut(s)	181, 545, 667
SduI	GDGCHC	2 cut(s)	151, 489
SexAI	ACCWGGT	1 cut(s)	226
SfaNI	GCATC	2 cut(s)	124, 863
SinI	GGWCC	7 cut(s)	155, 317, 365, 389, 437, 629, 789
SmlI	CTYRAG	2 cut(s)	150, 187
SmoI	CTYRAG	2 cut(s)	150, 187
Sse9I	AATT	1 cut(s)	31
SsiI	CCGC	1 cut(s)	604
SspMI	CTAG	2 cut(s)	213, 543
SstI	GAGCTC	1 cut(s)	151
StyI	CCWWGG	2 cut(s)	654, 671
TaaI	ACNGT	1 cut(s)	639
TaiI	ACGT	1 cut(s)	601
TasI	AATT	1 cut(s)	31
TatI	WGTACW	1 cut(s)	520
Tru1I	TTAA	1 cut(s)	846
Tru9I	TTAA	1 cut(s)	846
TscAI	CASTG	1 cut(s)	494
TseFI	GTSAC	1 cut(s)	684
TseI	GCWGC	1 cut(s)	824
Tsp45I	GTSAC	1 cut(s)	684
TspDTI	ATGAA	1 cut(s)	852
TspRI	CASTG	1 cut(s)	494
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	7 cut(s)	155, 317, 365, 389, 437, 629, 789
VspI	ATTAAT	1 cut(s)	846
XcmI	CCANNNNNNNNNTGG	1 cut(s)	135
XspI	CTAG	2 cut(s)	213, 543
Zsp2I	ATGCAT	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.