Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0014057

Physical Location & Seq

Genomic Coordinates Reverse (-)

56541810 .. 56544816

Gene Structure 3007 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G037200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1143 bp

ATGGAGACTTCAGAGAAGAGAAAGGAACGACTACGAGCAATGCGCCTAGAAGCTGAAGCTTCTCATAATGATACAAGTTCAGATGTACCAGGTTACCTTTCCAATCCGCTGGCTGATGATAATGTGAATGTGGCACAGGAGGAGCCCTGTGCTCCTTCGAGGTTTGGTTTTTATACAGACCCAATGGCGGGCTTCTCTTCAGACACTAAGCGATGTAAAGTTGGTGATCAGATTGCATCAAATAGTTTCAAACATTCAGATACTGGTGGTCTTCCTATGCCAAGGTTTCCTCCACCTCTTTCAGGAAGACCAAGGAACCCTGGAATGCCTCCTCCACCTCATCAGTTTCAGAGCAATTACTCACCAGACCAGAGAATGTACCAACAAAACTTTGTTCCTCAGAGAAATCCCACAGGAATGGTGAGACCTTTTGTCATGCATCATACAAATCCACCTGAAGTCTGGAATGGAGCTCAAGGTCCGGCGAGTTATAATTTCCCTCCTGATCCCTCAAGAGAAAGCAGTTTTCCTGGCCCTAGATTTAGACCACCAGGTAGCCCCGGATTTAGACCACCGGGAAGCCCCGGATTTGGGCCACCGGGAAGCCCCGGATTTGGGCCATCAGGAAGCTCGGGATTTGGGCCACCGGGAAGCCCGGGATTCGGGCCACCAGGAAGCCCCGGATTCGGGCCACCAGGAAGCCCCGGATTTGGACCACCCGGAAGCCCTGGGTTTGGTTCCAATACTCGGCAAGGTAGGGGGCACTGGGTCAGTCATAGTCCAAGCCCTCATTCAGTACATGGAGGTAGTCATAGTCCTAGATCAAGTTCAGGTAGAGGTAGGGGGCGCTCTGGGTCAGGATGGCGAGGTGGACGTGGGCGGGGTTCTGATGGTCGTCCATTGGGTCCAGAACAGTTTTACAATGCTTCCATGGTTGAAGAAGATCCATGGAAGGGTTTGTCACCTGTTACATGGAAAGCTTTGCCACCTGTTATCCGGAAGGGGGTAGATACTCCCTTCAATGGTAACAAAAATAAAGCAAGCGTTTCAGAAGGTTCAAACAGGTCCACTCCACAGCCAAACTTGGCAGAATACTTGGCTGCCTCATTGAATGAAACTATTAATGAGGCATCAACCTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000380 GO:0000381 GO:0000398 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0005886 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006810 GO:0006950 GO:0006970 GO:0007623 GO:0008104 GO:0008150 GO:0008152 GO:0008380 GO:0009266 GO:0009409 GO:0009605 GO:0009628 GO:0009649 GO:0009651 GO:0009889 GO:0009892 GO:0009914 GO:0009926 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010817 GO:0010866 GO:0010921 GO:0014070 GO:0016020 GO:0016070 GO:0016071 GO:0016246 GO:0016441 GO:0016458 GO:0016604 GO:0019216 GO:0019219 GO:0019220 GO:0019222 GO:0030422 GO:0031047 GO:0031050 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032879 GO:0033036 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0035303 GO:0040029 GO:0042221 GO:0042752 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043331 GO:0043484 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0046483 GO:0046890 GO:0048024 GO:0048511 GO:0048519 GO:0050684 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051049 GO:0051171 GO:0051174 GO:0051179 GO:0051234 GO:0051252 GO:0051336 GO:0051716 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0070013 GO:0070887 GO:0070918 GO:0071071 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0071944 GO:0080090 GO:0090207 GO:0090304 GO:1901360 GO:1901698 GO:1901699 GO:1901703 GO:1903311 GO:1903725 GO:1903730 GO:2000012

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MPLKIP

Protein Analysis

380

Amino Acids

40.25

Weight (kDa)

9.75

Isoelectric Point (pI)

60.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014057)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24500 AT4G24500 AT4G24500
fragaria_vesca	FvH4_5g34870
malus_domestica	MD08G1199700.v1.1
prunus_persica	Prupe.1G533200_v2.0.a1
pyrus_communis	pycom08g17330 pycom15g34700
rosa_chinensis	RchiOBHm_Chr7g0235791
rosa_laevigata	RLG00000001139
rosa_roxburghii	Rroxscaffold_3G00225630
rosa_rugosa	Rorug07G0292800
rosa_samantha	Rh7AG447700 Rh7BG419900 Rh7CG468200 Rh7DG436700
rosa_wichuraiana	Rw7G037200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	492
AccIII	TCCGGA	1 cut(s)	996
AciI	CCGC	3 cut(s)	107, 188, 880
AclWI	GGATC	2 cut(s)	500, 938
AcuI	CTGAAG	3 cut(s)	75, 183, 477
AfaI	GTAC	3 cut(s)	87, 380, 798
AgsI	TTSAA	5 cut(s)	250, 938, 1021, 1059, 1111
AhdI	GACNNNNNGTC	1 cut(s)	431
AjiI	CACGTC	1 cut(s)	875
AjnI	CCWGG	7 cut(s)	88, 319, 529, 550, 670, 694, 727
AjuI	GAANNNNNNNTTGG	2 cut(s)	775, 807
AluBI	AGCT	5 cut(s)	53, 59, 473, 630, 980
AluI	AGCT	5 cut(s)	53, 59, 473, 630, 980
Alw21I	GWGCWC	2 cut(s)	154, 475
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	2 cut(s)	500, 938
AlwNI	CAGNNNCTG	1 cut(s)	263
Ama87I	CYCGRG	2 cut(s)	631, 655
Aor13HI	TCCGGA	1 cut(s)	996
AoxI	GGCC	6 cut(s)	532, 593, 617, 641, 665, 689
ApeKI	GCWGC	1 cut(s)	1100
AseI	ATTAAT	1 cut(s)	1122
AspLEI	GCGC	2 cut(s)	45, 849
AsuHPI	GGTGA	4 cut(s)	236, 354, 433, 954
AvaI	CYCGRG	2 cut(s)	631, 655
AvaII	GGWCC	4 cut(s)	479, 713, 905, 1065
BaeGI	GKGCMC	1 cut(s)	765
BanII	GRGCYC	2 cut(s)	147, 475
BbsI	GAAGAC	2 cut(s)	263, 313
Bbv12I	GWGCWC	2 cut(s)	154, 475
BbvI	GCAGC	1 cut(s)	1087
BccI	CCATC	3 cut(s)	628, 855, 884
BcgI	CGANNNNNNTGC	1 cut(s)	1119
BciT130I	CCWGG	7 cut(s)	90, 321, 531, 552, 672, 696, 729
BclI	TGATCA	1 cut(s)	226
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	3 cut(s)	47, 537, 819
BfoI	RGCGCY	1 cut(s)	850
BisI	GCNGC	1 cut(s)	1101
BlsI	GCNGC	1 cut(s)	1102
Bme18I	GGWCC	4 cut(s)	479, 713, 905, 1065
BmeRI	GACNNNNNGTC	1 cut(s)	431
BmeT110I	CYCGRG	2 cut(s)	631, 655
BmgBI	CACGTC	1 cut(s)	875
BmiI	GGNNCC	4 cut(s)	144, 317, 739, 906
BmrI	ACTGGG	1 cut(s)	775
BmsI	GCATC	3 cut(s)	245, 448, 1139
BmuI	ACTGGG	1 cut(s)	775
BpiI	GAAGAC	2 cut(s)	263, 313
BpuEI	CTTGAG	2 cut(s)	459, 496
BsaI	GGTCTC	1 cut(s)	418
BsaWI	WCCGGW	1 cut(s)	996
Bse1I	ACTGG	2 cut(s)	268, 770
Bse3DI	GCAATG	1 cut(s)	45
BseAI	TCCGGA	1 cut(s)	996
BseBI	CCWGG	7 cut(s)	90, 321, 531, 552, 672, 696, 729
BseGI	GGATG	1 cut(s)	866
BseMI	GCAATG	1 cut(s)	45
BseMII	CTCAG	1 cut(s)	413
BseNI	ACTGG	2 cut(s)	268, 770
BseRI	GAGGAG	2 cut(s)	155, 321
BseSI	GKGCMC	1 cut(s)	765
BseXI	GCAGC	1 cut(s)	1087
BshFI	GGCC	6 cut(s)	534, 595, 619, 643, 667, 691
BsiHKAI	GWGCWC	2 cut(s)	154, 475
BsiHKCI	CYCGRG	2 cut(s)	631, 655
BsmAI	GTCTC	1 cut(s)	418
BsmI	GAATGC	1 cut(s)	330
BsnI	GGCC	6 cut(s)	534, 595, 619, 643, 667, 691
Bso31I	GGTCTC	1 cut(s)	418
BsoBI	CYCGRG	2 cut(s)	631, 655
Bsp1286I	GDGCHC	4 cut(s)	147, 154, 475, 765
Bsp13I	TCCGGA	1 cut(s)	996
Bsp143I	GATC	4 cut(s)	226, 505, 821, 943
Bsp19I	CCATGG	2 cut(s)	930, 947
BspACI	CCGC	3 cut(s)	107, 188, 880
BspANI	GGCC	6 cut(s)	534, 595, 619, 643, 667, 691
BspCNI	CTCAG	1 cut(s)	412
BspEI	TCCGGA	1 cut(s)	996
BspLI	GGNNCC	4 cut(s)	144, 317, 739, 906
BspPI	GGATC	2 cut(s)	500, 938
BspTNI	GGTCTC	1 cut(s)	418
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	2 cut(s)	268, 770
BssMI	GATC	4 cut(s)	226, 505, 821, 943
BssT1I	CCWWGG	4 cut(s)	281, 311, 930, 947
Bst2UI	CCWGG	7 cut(s)	90, 321, 531, 552, 672, 696, 729
Bst4CI	ACNGT	1 cut(s)	915
Bst6I	CTCTTC	2 cut(s)	11, 202
BstC8I	GCNNGC	3 cut(s)	111, 190, 1042
BstDEI	CTNAG	2 cut(s)	207, 399
BstDSI	CCRYGG	2 cut(s)	930, 947
BstEII	GGTNACC	1 cut(s)	92
BstENI	CCTNNNNNAGG	1 cut(s)	300
BstF5I	GGATG	1 cut(s)	866
BstH2I	RGCGCY	1 cut(s)	850
BstHHI	GCGC	2 cut(s)	45, 849
BstKTI	GATC	4 cut(s)	229, 508, 824, 946
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	4 cut(s)	226, 505, 821, 943
BstNI	CCWGG	7 cut(s)	90, 321, 531, 552, 672, 696, 729
BstPI	GGTNACC	1 cut(s)	92
BstSLI	GKGCMC	1 cut(s)	765
BstV1I	GCAGC	1 cut(s)	1087
BstV2I	GAAGAC	2 cut(s)	263, 313
BstX2I	RGATCY	1 cut(s)	943
BstXI	CCANNNNNNTGG	2 cut(s)	109, 418
BstYI	RGATCY	1 cut(s)	943
BsuRI	GGCC	6 cut(s)	534, 595, 619, 643, 667, 691
BtgI	CCRYGG	2 cut(s)	930, 947
BtgZI	GCGATG	1 cut(s)	226
BtrI	CACGTC	1 cut(s)	875
BtsCI	GGATG	1 cut(s)	866
BtsIMutI	CAGTG	1 cut(s)	763
Cac8I	GCNNGC	3 cut(s)	111, 190, 1042
CaiI	CAGNNNCTG	1 cut(s)	263
CfoI	GCGC	2 cut(s)	45, 849
Cfr9I	CCCGGG	1 cut(s)	655
CsiI	ACCWGGT	2 cut(s)	88, 550
Csp6I	GTAC	3 cut(s)	86, 379, 797
CviAII	CATG	5 cut(s)	436, 800, 931, 948, 972
CviQI	GTAC	3 cut(s)	86, 379, 797
DdeI	CTNAG	2 cut(s)	207, 399
DpnI	GATC	4 cut(s)	228, 507, 823, 945
DpnII	GATC	4 cut(s)	226, 505, 821, 943
DriI	GACNNNNNGTC	1 cut(s)	431
Eam1104I	CTCTTC	2 cut(s)	11, 202
Eam1105I	GACNNNNNGTC	1 cut(s)	431
EarI	CTCTTC	2 cut(s)	11, 202
Ecl136II	GAGCTC	1 cut(s)	473
Eco130I	CCWWGG	4 cut(s)	281, 311, 930, 947
Eco24I	GRGCYC	2 cut(s)	147, 475
Eco31I	GGTCTC	1 cut(s)	418
Eco47I	GGWCC	4 cut(s)	479, 713, 905, 1065
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	3 cut(s)	75, 183, 477
Eco88I	CYCGRG	2 cut(s)	631, 655
Eco91I	GGTNACC	1 cut(s)	92
EcoICRI	GAGCTC	1 cut(s)	473
EcoNI	CCTNNNNNAGG	1 cut(s)	300
EcoO65I	GGTNACC	1 cut(s)	92
EcoRII	CCWGG	7 cut(s)	88, 319, 529, 550, 670, 694, 727
EcoT14I	CCWWGG	4 cut(s)	281, 311, 930, 947
EcoT22I	ATGCAT	1 cut(s)	441
EcoT38I	GRGCYC	2 cut(s)	147, 475
ErhI	CCWWGG	4 cut(s)	281, 311, 930, 947
FaeI	CATG	5 cut(s)	439, 803, 934, 951, 975
FatI	CATG	5 cut(s)	435, 799, 930, 947, 971
FauI	CCCGC	2 cut(s)	181, 873
FbaI	TGATCA	1 cut(s)	226
Fnu4HI	GCNGC	1 cut(s)	1101
FokI	GGATG	1 cut(s)	873
FriOI	GRGCYC	2 cut(s)	147, 475
Fsp4HI	GCNGC	1 cut(s)	1101
FspBI	CTAG	3 cut(s)	47, 537, 819
GlaI	GCGC	2 cut(s)	44, 848
GluI	GCNGC	1 cut(s)	1101
HaeII	RGCGCY	1 cut(s)	850
HaeIII	GGCC	6 cut(s)	534, 595, 619, 643, 667, 691
HhaI	GCGC	2 cut(s)	45, 849
Hin1II	CATG	5 cut(s)	439, 803, 934, 951, 975
Hin6I	GCGC	2 cut(s)	43, 847
HinP1I	GCGC	2 cut(s)	43, 847
HindIII	AAGCTT	2 cut(s)	57, 978
HinfI	GANTC	2 cut(s)	660, 684
HphI	GGTGA	4 cut(s)	236, 354, 433, 954
Hpy166II	GTNNAC	2 cut(s)	872, 1068
Hpy188I	TCNGA	9 cut(s)	13, 82, 202, 231, 259, 351, 402, 889, 1051
Hpy188III	TCNNGA	9 cut(s)	303, 463, 503, 513, 624, 633, 858, 908, 997
Hpy8I	GTNNAC	2 cut(s)	872, 1068
HpyAV	CCTTC	5 cut(s)	165, 946, 994, 1027, 1046
HpyCH4III	ACNGT	1 cut(s)	915
HpyCH4IV	ACGT	1 cut(s)	874
HpyCH4V	TGCA	2 cut(s)	236, 439
HpyF3I	CTNAG	2 cut(s)	207, 399
HpySE526I	ACGT	1 cut(s)	874
Hsp92II	CATG	5 cut(s)	439, 803, 934, 951, 975
HspAI	GCGC	2 cut(s)	43, 847
Kpn2I	TCCGGA	1 cut(s)	996
Ksp22I	TGATCA	1 cut(s)	226
Kzo9I	GATC	4 cut(s)	226, 505, 821, 943
LmnI	GCTCC	3 cut(s)	142, 157, 470
Lsp1109I	GCAGC	1 cut(s)	1087
LweI	GCATC	3 cut(s)	245, 448, 1139
MabI	ACCWGGT	2 cut(s)	88, 550
MaeI	CTAG	3 cut(s)	47, 537, 819
MaeII	ACGT	1 cut(s)	874
MaeIII	GTNAC	4 cut(s)	92, 960, 967, 1025
MalI	GATC	4 cut(s)	228, 507, 823, 945
MboI	GATC	4 cut(s)	226, 505, 821, 943
MboII	GAAGA	6 cut(s)	28, 189, 263, 318, 950, 953
MflI	RGATCY	1 cut(s)	943
MhlI	GDGCHC	4 cut(s)	147, 154, 475, 765
MluCI	AATT	2 cut(s)	355, 493
Mph1103I	ATGCAT	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	996
MseI	TTAA	1 cut(s)	1122
MslI	CAYNNNNRTG	1 cut(s)	416
MspA1I	CMGCKG	1 cut(s)	109
Mva1269I	GAATGC	1 cut(s)	330
MvaI	CCWGG	7 cut(s)	90, 321, 531, 552, 672, 696, 729
NcoI	CCATGG	2 cut(s)	930, 947
NdeII	GATC	4 cut(s)	226, 505, 821, 943
NlaIII	CATG	5 cut(s)	439, 803, 934, 951, 975
NlaIV	GGNNCC	4 cut(s)	144, 317, 739, 906
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	1 cut(s)	960
NsiI	ATGCAT	1 cut(s)	441
PasI	CCCWGGG	1 cut(s)	728
PctI	GAATGC	1 cut(s)	330
PfeI	GAWTC	2 cut(s)	660, 684
PkrI	GCNGC	1 cut(s)	1102
PshBI	ATTAAT	1 cut(s)	1122
PsiI	TTATAA	1 cut(s)	492
Psp124BI	GAGCTC	1 cut(s)	475
Psp6I	CCWGG	7 cut(s)	88, 319, 529, 550, 670, 694, 727
PspEI	GGTNACC	1 cut(s)	92
PspGI	CCWGG	7 cut(s)	88, 319, 529, 550, 670, 694, 727
PspN4I	GGNNCC	4 cut(s)	144, 317, 739, 906
PstNI	CAGNNNCTG	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	943
RsaI	GTAC	3 cut(s)	87, 380, 798
RsaNI	GTAC	3 cut(s)	86, 379, 797
RseI	CAYNNNNRTG	1 cut(s)	416
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	1 cut(s)	1122
SatI	GCNGC	1 cut(s)	1101
Sau3AI	GATC	4 cut(s)	226, 505, 821, 943
SduI	GDGCHC	4 cut(s)	147, 154, 475, 765
SexAI	ACCWGGT	2 cut(s)	88, 550
SfaNI	GCATC	3 cut(s)	245, 448, 1139
SinI	GGWCC	4 cut(s)	479, 713, 905, 1065
SmaI	CCCGGG	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	416
SmlI	CTYRAG	2 cut(s)	474, 511
SmoI	CTYRAG	2 cut(s)	474, 511
Sse9I	AATT	2 cut(s)	355, 493
SsiI	CCGC	3 cut(s)	107, 188, 880
SspMI	CTAG	3 cut(s)	47, 537, 819
SstI	GAGCTC	1 cut(s)	475
StyI	CCWWGG	4 cut(s)	281, 311, 930, 947
TaaI	ACNGT	1 cut(s)	915
TaiI	ACGT	1 cut(s)	877
TaqI	TCGA	1 cut(s)	158
TasI	AATT	2 cut(s)	355, 493
TatI	WGTACW	1 cut(s)	796
TfiI	GAWTC	2 cut(s)	660, 684
Tru1I	TTAA	1 cut(s)	1122
Tru9I	TTAA	1 cut(s)	1122
TscAI	CASTG	1 cut(s)	770
TseFI	GTSAC	1 cut(s)	960
TseI	GCWGC	1 cut(s)	1100
Tsp45I	GTSAC	1 cut(s)	960
TspDTI	ATGAA	1 cut(s)	1128
TspMI	CCCGGG	1 cut(s)	655
TspRI	CASTG	1 cut(s)	770
VpaK11BI	GGWCC	4 cut(s)	479, 713, 905, 1065
VspI	ATTAAT	1 cut(s)	1122
XagI	CCTNNNNNAGG	1 cut(s)	300
XcmI	CCANNNNNNNNNTGG	1 cut(s)	459
XmaI	CCCGGG	1 cut(s)	655
XspI	CTAG	3 cut(s)	47, 537, 819
Zsp2I	ATGCAT	1 cut(s)	441

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.