Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Forward (+)

12696472 .. 12698343

Gene Structure 1872 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G24590.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGGAAATCGAAGTCTCTTGCTCGACTCATGATGCCGAAACCAAAGGAAACCGCATCGATTTGGATAGTATTCGTGTAAAGCGAAAGACGTTACAGAATCTGCTCGCGGATTGCCAGAGAGCTCTTGAGCTTCTAGAACTTCCCGGCGATGAAAACGGTGGCGAACAGAGTGAATCACCGGAGGAGGAGGAGGAGGAAGAATCGGACAGGGAAGAACCGTCTGCTTCCGATCCAGGAGATCCTGAAGCTGATAAATTTTATGATCTCATCAAATCTAGAGTTGAATGTAATGACTTTCGTGAAAAGATAGAATTAGCTCAAGTTTCAGTTCCCCAAGTTCTTGCTGAAGATAGTAGCTCTTGGGATGTAGTTAGTGAAGATGATTTATGGGATGAGGAATGTGTGGGTCAAACGGAAGATGATTATGTCGTTGTTAGGGAAGAAGATATAGCTGACGGTATTGCTTGTTTCATGGCTACTTATTTATCATCCCTTAAGCAAACAAAGGATATATCACCTGATCAGCTTCAGAAAGCACTTAGCACGATGTTTTCAGTGAAGAAAAGAAAGGGGAAGCTTCGTAAGGCATGGGAGGGAAGTAAAGTTATTTACAACGTAGCATCATGGAGCGCAACTGCGATAGGGATATATCAAAACCCGATGATCCTGAGTATTGCATCCAAAGCATTCTGGATGTCGTGCCAGGCTATATCGAAGCTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

241

Amino Acids

27.04

Weight (kDa)

4.37

Isoelectric Point (pI)

63.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	107
AciI	CCGC	2 cut(s)	52, 107
AclWI	GGATC	3 cut(s)	224, 233, 658
AcsI	RAATTY	1 cut(s)	254
AcuI	CTGAAG	3 cut(s)	264, 366, 512
AflII	CTTAAG	1 cut(s)	494
AgsI	TTSAA	1 cut(s)	284
AjnI	CCWGG	2 cut(s)	232, 702
AluBI	AGCT	9 cut(s)	122, 130, 248, 317, 357, 452, 526, 577, 718
AluI	AGCT	9 cut(s)	122, 130, 248, 317, 357, 452, 526, 577, 718
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	1 cut(s)	19
AlwI	GGATC	3 cut(s)	224, 233, 658
AlwNI	CAGNNNCTG	1 cut(s)	100
ApoI	RAATTY	1 cut(s)	254
AspLEI	GCGC	1 cut(s)	632
AsuC2I	CCSGG	1 cut(s)	144
AsuHPI	GGTGA	2 cut(s)	168, 507
BanII	GRGCYC	1 cut(s)	124
Bbv12I	GWGCWC	1 cut(s)	124
BciT130I	CCWGG	2 cut(s)	234, 704
BclI	TGATCA	1 cut(s)	520
BcnI	CCSGG	1 cut(s)	144
BcoDI	GTCTC	1 cut(s)	19
BfaI	CTAG	2 cut(s)	134, 276
BfrI	CTTAAG	1 cut(s)	494
Bme1390I	CCNGG	3 cut(s)	144, 234, 704
BmrFI	CCNGG	3 cut(s)	144, 234, 704
BmsI	GCATC	4 cut(s)	22, 63, 629, 686
BpuEI	CTTGAG	2 cut(s)	146, 303
BpuMI	CCSGG	1 cut(s)	144
Bsa29I	ATCGAT	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	178
BseBI	CCWGG	2 cut(s)	234, 704
BseCI	ATCGAT	1 cut(s)	57
BseGI	GGATG	5 cut(s)	370, 397, 488, 677, 699
BseMII	CTCAG	1 cut(s)	659
BseRI	GAGGAG	4 cut(s)	197, 200, 203, 206
Bsh1236I	CGCG	1 cut(s)	107
BshVI	ATCGAT	1 cut(s)	57
BsiHKAI	GWGCWC	1 cut(s)	124
BsiSI	CCGG	2 cut(s)	144, 179
BsmAI	GTCTC	1 cut(s)	19
BsmI	GAATGC	1 cut(s)	686
Bsp1286I	GDGCHC	1 cut(s)	124
Bsp143I	GATC	5 cut(s)	229, 238, 262, 520, 663
BspACI	CCGC	2 cut(s)	52, 107
BspCNI	CTCAG	1 cut(s)	660
BspDI	ATCGAT	1 cut(s)	57
BspFNI	CGCG	1 cut(s)	107
BspHI	TCATGA	1 cut(s)	28
BspPI	GGATC	3 cut(s)	224, 233, 658
BspTI	CTTAAG	1 cut(s)	494
BssMI	GATC	5 cut(s)	229, 238, 262, 520, 663
Bst2UI	CCWGG	2 cut(s)	234, 704
Bst4CI	ACNGT	3 cut(s)	158, 219, 458
BstAFI	CTTAAG	1 cut(s)	494
BstC8I	GCNNGC	1 cut(s)	105
BstDEI	CTNAG	2 cut(s)	539, 668
BstF5I	GGATG	5 cut(s)	370, 397, 488, 677, 699
BstFNI	CGCG	1 cut(s)	107
BstHHI	GCGC	1 cut(s)	632
BstKTI	GATC	5 cut(s)	232, 241, 265, 523, 666
BstMAI	GTCTC	1 cut(s)	19
BstMBI	GATC	5 cut(s)	229, 238, 262, 520, 663
BstMWI	GCNNNNNNNGC	1 cut(s)	683
BstNI	CCWGG	2 cut(s)	234, 704
BstSCI	CCNGG	3 cut(s)	142, 232, 702
BstUI	CGCG	1 cut(s)	107
BstX2I	RGATCY	1 cut(s)	238
BstYI	RGATCY	1 cut(s)	238
Bsu15I	ATCGAT	1 cut(s)	57
BsuTUI	ATCGAT	1 cut(s)	57
BtgZI	GCGATG	1 cut(s)	162
BtsCI	GGATG	5 cut(s)	370, 397, 488, 677, 699
BtsIMutI	CAGTG	1 cut(s)	561
Cac8I	GCNNGC	1 cut(s)	105
CaiI	CAGNNNCTG	1 cut(s)	100
CciI	TCATGA	1 cut(s)	28
CfoI	GCGC	1 cut(s)	632
ClaI	ATCGAT	1 cut(s)	57
CviAII	CATG	4 cut(s)	29, 472, 588, 624
DdeI	CTNAG	2 cut(s)	539, 668
DpnI	GATC	5 cut(s)	231, 240, 264, 522, 665
DpnII	GATC	5 cut(s)	229, 238, 262, 520, 663
Ecl136II	GAGCTC	1 cut(s)	122
Eco24I	GRGCYC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	122
Eco57I	CTGAAG	3 cut(s)	264, 366, 512
EcoICRI	GAGCTC	1 cut(s)	122
EcoRII	CCWGG	2 cut(s)	232, 702
EcoT38I	GRGCYC	1 cut(s)	124
FaeI	CATG	4 cut(s)	32, 475, 591, 627
FatI	CATG	4 cut(s)	28, 471, 587, 623
FbaI	TGATCA	1 cut(s)	520
FokI	GGATG	5 cut(s)	377, 404, 475, 664, 706
FriOI	GRGCYC	1 cut(s)	124
FspBI	CTAG	2 cut(s)	134, 276
GlaI	GCGC	1 cut(s)	631
HapII	CCGG	2 cut(s)	144, 179
HhaI	GCGC	1 cut(s)	632
Hin1II	CATG	4 cut(s)	32, 475, 591, 627
Hin6I	GCGC	1 cut(s)	630
HinP1I	GCGC	1 cut(s)	630
HindIII	AAGCTT	2 cut(s)	575, 716
HinfI	GANTC	4 cut(s)	25, 97, 173, 200
HpaII	CCGG	2 cut(s)	144, 179
HphI	GGTGA	2 cut(s)	168, 507
Hpy188I	TCNGA	4 cut(s)	205, 229, 531, 725
Hpy188III	TCNNGA	8 cut(s)	29, 125, 134, 242, 276, 299, 667, 691
HpyCH4III	ACNGT	3 cut(s)	158, 219, 458
HpyCH4IV	ACGT	2 cut(s)	89, 615
HpyCH4V	TGCA	1 cut(s)	677
HpyF10VI	GCNNNNNNNGC	1 cut(s)	683
HpyF3I	CTNAG	2 cut(s)	539, 668
HpySE526I	ACGT	2 cut(s)	89, 615
Hsp92II	CATG	4 cut(s)	32, 475, 591, 627
HspAI	GCGC	1 cut(s)	630
Ksp22I	TGATCA	1 cut(s)	520
Kzo9I	GATC	5 cut(s)	229, 238, 262, 520, 663
LmnI	GCTCC	1 cut(s)	627
LweI	GCATC	4 cut(s)	22, 63, 629, 686
MaeI	CTAG	2 cut(s)	134, 276
MaeII	ACGT	2 cut(s)	89, 615
MaeIII	GTNAC	1 cut(s)	90
MalI	GATC	5 cut(s)	231, 240, 264, 522, 665
MboI	GATC	5 cut(s)	229, 238, 262, 520, 663
MboII	GAAGA	8 cut(s)	209, 224, 359, 389, 428, 452, 455, 571
MflI	RGATCY	1 cut(s)	238
MhlI	GDGCHC	1 cut(s)	124
MluCI	AATT	2 cut(s)	254, 311
MlyI	GAGTC	1 cut(s)	19
MnlI	CCTC	7 cut(s)	175, 178, 181, 184, 187, 388, 586
MseI	TTAA	1 cut(s)	495
MspCI	CTTAAG	1 cut(s)	494
MspI	CCGG	2 cut(s)	144, 179
MspR9I	CCNGG	3 cut(s)	144, 234, 704
Mva1269I	GAATGC	1 cut(s)	686
MvaI	CCWGG	2 cut(s)	234, 704
MvnI	CGCG	1 cut(s)	107
MwoI	GCNNNNNNNGC	1 cut(s)	683
NciI	CCSGG	1 cut(s)	144
NdeII	GATC	5 cut(s)	229, 238, 262, 520, 663
NlaIII	CATG	4 cut(s)	32, 475, 591, 627
PagI	TCATGA	1 cut(s)	28
PcsI	WCGNNNNNNNCGW	1 cut(s)	79
PctI	GAATGC	1 cut(s)	686
PfeI	GAWTC	3 cut(s)	97, 173, 200
PfoI	TCCNGGA	1 cut(s)	232
PleI	GAGTC	1 cut(s)	19
PpsI	GAGTC	1 cut(s)	19
Psp124BI	GAGCTC	1 cut(s)	124
Psp6I	CCWGG	2 cut(s)	232, 702
PspGI	CCWGG	2 cut(s)	232, 702
PstNI	CAGNNNCTG	1 cut(s)	100
PsuI	RGATCY	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	124
SaqAI	TTAA	1 cut(s)	495
Sau3AI	GATC	5 cut(s)	229, 238, 262, 520, 663
SchI	GAGTC	1 cut(s)	19
ScrFI	CCNGG	3 cut(s)	144, 234, 704
SduI	GDGCHC	1 cut(s)	124
SfaNI	GCATC	4 cut(s)	22, 63, 629, 686
SmlI	CTYRAG	3 cut(s)	125, 318, 494
SmoI	CTYRAG	3 cut(s)	125, 318, 494
Sse9I	AATT	2 cut(s)	254, 311
SsiI	CCGC	2 cut(s)	52, 107
SspMI	CTAG	2 cut(s)	134, 276
SstI	GAGCTC	1 cut(s)	124
StyD4I	CCNGG	3 cut(s)	142, 232, 702
TaaI	ACNGT	3 cut(s)	158, 219, 458
TaiI	ACGT	2 cut(s)	92, 618
TaqI	TCGA	4 cut(s)	9, 23, 57, 713
TasI	AATT	2 cut(s)	254, 311
TfiI	GAWTC	3 cut(s)	97, 173, 200
Tru1I	TTAA	1 cut(s)	495
Tru9I	TTAA	1 cut(s)	495
TscAI	CASTG	1 cut(s)	561
TspDTI	ATGAA	2 cut(s)	165, 460
TspGWI	ACGGA	1 cut(s)	428
TspRI	CASTG	1 cut(s)	561
Vha464I	CTTAAG	1 cut(s)	494
XapI	RAATTY	1 cut(s)	254
XbaI	TCTAGA	2 cut(s)	133, 275
XspI	CTAG	2 cut(s)	134, 276

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.