Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Forward (+)

26098547 .. 26102245

Gene Structure 3699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g35650.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAAGTGGAGGTCGCCGATTCGATACCCTCGGTAGCTGCGGCGAAGCTGAGGAGAGGGGATTCCGATAAGGATCGGCTCCGTGTGAAGAAGAAGACTCTTCAGGCCGTCCTCGACCAGTGCCAGCGAGCTCTTGAATCGCTCGGTACCACCGCCGACGGTGCCGATGACGACGGTGACGATGAAGAAGAGGATAGAGACGGTGGCGGTGACGCCGTTGGCGAAGGCAGTGGCTCCACGACGACGACGACTTCTCCTCGTGCTGACTGCGAAGCTGATGAGTTGTGCAATCTTCTTAAATCTAGAGTTGAGTGCCCAGACTTCCTGGAAAAGTTAGAATCTGCACAAGCATCAGTTCCACAAAATATTGCTGAAGGCAATTCTTGGGATCTAGTCAGTGAGAAAGATCTATGGGAATATGAGGATGACAACTTGGGTGAAGATGAGTATGTCCTTGTTAAGCAAGAAGATATAGTAGAGGGTATTGCATGCTTTATGGCTGCATACTTGTTATCCCTTAAAGAAACTAAGGAATTGACCCCTACACAACTTCAGGAAGCCCTCAGCAAGACATTCTCAGTGAAAAAGAAGAAAGGAAAACTTCGAAAGGCATGGGATGGAAGCAAAGTCATCTATAATGTAGCATCATGGGGAGCAACTGCCATTGGGATATATCAGAACCCTGTAATCGTCAGGGCTGCCACAAAAGCCTTCTGGACATCTTGCCAGGTTATATCAAAGCTTCTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

27.21

Weight (kDa)

4.55

Isoelectric Point (pI)

31.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	2 cut(s)	146, 161
AciI	CCGC	3 cut(s)	41, 153, 207
AclWI	GGATC	2 cut(s)	81, 396
AcuI	CTGAAG	3 cut(s)	86, 393, 536
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	137
AjnI	CCWGG	2 cut(s)	324, 726
AluBI	AGCT	5 cut(s)	38, 49, 131, 275, 742
AluI	AGCT	5 cut(s)	38, 49, 131, 275, 742
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	192
AlwI	GGATC	2 cut(s)	81, 396
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	3 cut(s)	38, 500, 698
Asp718I	GGTACC	1 cut(s)	146
AsuHPI	GGTGA	3 cut(s)	188, 221, 449
AsuII	TTCGAA	1 cut(s)	604
BaeGI	GKGCMC	1 cut(s)	317
BanI	GGYRCC	2 cut(s)	146, 161
BanII	GRGCYC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	258
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	133
BbvCI	CCTCAGC	2 cut(s)	50, 563
BbvI	GCAGC	3 cut(s)	25, 487, 685
BccI	CCATC	1 cut(s)	611
BceAI	ACGGC	2 cut(s)	92, 200
BciT130I	CCWGG	2 cut(s)	326, 728
BcoDI	GTCTC	1 cut(s)	192
BfaI	CTAG	3 cut(s)	303, 392, 748
BglII	AGATCT	1 cut(s)	406
BisI	GCNGC	4 cut(s)	39, 42, 501, 699
BlsI	GCNGC	4 cut(s)	40, 43, 502, 700
Bme1390I	CCNGG	2 cut(s)	326, 728
BmiI	GGNNCC	4 cut(s)	80, 148, 163, 235
BmrFI	CCNGG	2 cut(s)	326, 728
BmsI	GCATC	2 cut(s)	359, 653
BpiI	GAAGAC	1 cut(s)	101
Bpu10I	CCTNAGC	2 cut(s)	50, 563
Bpu14I	TTCGAA	1 cut(s)	604
BsaBI	GATNNNNATC	1 cut(s)	72
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	30
BsaXI	ACNNNNNCTCC	2 cut(s)	238, 268
Bse1I	ACTGG	1 cut(s)	118
Bse8I	GATNNNNATC	1 cut(s)	72
BseBI	CCWGG	2 cut(s)	326, 728
BseDI	CCNNGG	1 cut(s)	30
BseGI	GGATG	2 cut(s)	430, 622
BseJI	GATNNNNATC	1 cut(s)	72
BseMII	CTCAG	3 cut(s)	41, 577, 591
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	67, 246
BseSI	GKGCMC	1 cut(s)	317
BseXI	GCAGC	3 cut(s)	25, 487, 685
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	2 cut(s)	146, 161
BsiHKAI	GWGCWC	1 cut(s)	133
BsmAI	GTCTC	1 cut(s)	192
BsmBI	CGTCTC	1 cut(s)	192
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	604
Bsp1286I	GDGCHC	2 cut(s)	133, 317
Bsp143I	GATC	3 cut(s)	73, 388, 406
BspACI	CCGC	3 cut(s)	41, 153, 207
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	3 cut(s)	42, 576, 590
BspLI	GGNNCC	4 cut(s)	80, 148, 163, 235
BspPI	GGATC	2 cut(s)	81, 396
BspT104I	TTCGAA	1 cut(s)	604
BspT107I	GGYRCC	2 cut(s)	146, 161
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	1 cut(s)	30
BssMI	GATC	3 cut(s)	73, 388, 406
BssNI	GRCGYC	1 cut(s)	213
BssSI	CACGAG	1 cut(s)	258
Bst2BI	CACGAG	1 cut(s)	258
Bst2UI	CCWGG	2 cut(s)	326, 728
Bst4CI	ACNGT	3 cut(s)	161, 176, 203
Bst6I	CTCTTC	2 cut(s)	105, 183
BstACI	GRCGYC	1 cut(s)	213
BstBI	TTCGAA	1 cut(s)	604
BstC8I	GCNNGC	3 cut(s)	125, 129, 490
BstDEI	CTNAG	4 cut(s)	50, 528, 563, 577
BstF5I	GGATG	2 cut(s)	430, 622
BstKTI	GATC	3 cut(s)	76, 391, 409
BstMAI	GTCTC	1 cut(s)	192
BstMBI	GATC	3 cut(s)	73, 388, 406
BstMWI	GCNNNNNNNGC	2 cut(s)	161, 707
BstNI	CCWGG	2 cut(s)	326, 728
BstNSI	RCATGY	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	324, 726
BstSLI	GKGCMC	1 cut(s)	317
BstV1I	GCAGC	3 cut(s)	25, 487, 685
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	2 cut(s)	388, 406
BstYI	RGATCY	2 cut(s)	388, 406
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	430, 622
BtsI	GCAGTG	1 cut(s)	235
BtsIMutI	CAGTG	4 cut(s)	125, 235, 403, 585
Cac8I	GCNNGC	3 cut(s)	125, 129, 490
CseI	GACGC	1 cut(s)	221
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	3 cut(s)	489, 612, 648
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	4 cut(s)	50, 528, 563, 577
DpnI	GATC	3 cut(s)	75, 390, 408
DpnII	GATC	3 cut(s)	73, 388, 406
Eam1104I	CTCTTC	2 cut(s)	105, 183
EarI	CTCTTC	2 cut(s)	105, 183
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	3 cut(s)	86, 393, 536
EcoICRI	GAGCTC	1 cut(s)	131
EcoRII	CCWGG	2 cut(s)	324, 726
EcoT38I	GRGCYC	1 cut(s)	133
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	3 cut(s)	492, 615, 651
FalI	AAGNNNNNCTT	2 cut(s)	585, 617
FatI	CATG	3 cut(s)	488, 611, 647
Fnu4HI	GCNGC	4 cut(s)	39, 42, 501, 699
FokI	GGATG	2 cut(s)	437, 629
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	39, 42, 501, 699
FspBI	CTAG	3 cut(s)	303, 392, 748
GluI	GCNGC	4 cut(s)	39, 42, 501, 699
HaeIII	GGCC	1 cut(s)	107
HgaI	GACGC	1 cut(s)	221
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	3 cut(s)	492, 615, 651
HindIII	AAGCTT	1 cut(s)	740
HinfI	GANTC	5 cut(s)	20, 62, 97, 137, 338
HphI	GGTGA	3 cut(s)	188, 221, 449
Hpy188I	TCNGA	2 cut(s)	67, 678
Hpy188III	TCNNGA	4 cut(s)	134, 303, 554, 715
Hpy99I	CGWCG	5 cut(s)	161, 176, 244, 247, 250
HpyAV	CCTTC	3 cut(s)	218, 368, 721
HpyCH4III	ACNGT	3 cut(s)	161, 176, 203
HpyCH4V	TGCA	4 cut(s)	288, 344, 488, 503
HpyF10VI	GCNNNNNNNGC	2 cut(s)	161, 707
HpyF3I	CTNAG	4 cut(s)	50, 528, 563, 577
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	3 cut(s)	492, 615, 651
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	73, 388, 406
LmnI	GCTCC	3 cut(s)	84, 239, 653
Lsp1109I	GCAGC	3 cut(s)	25, 487, 685
LweI	GCATC	2 cut(s)	359, 653
MaeI	CTAG	3 cut(s)	303, 392, 748
MaeIII	GTNAC	2 cut(s)	176, 209
MalI	GATC	3 cut(s)	75, 390, 408
MboI	GATC	3 cut(s)	73, 388, 406
MflI	RGATCY	2 cut(s)	388, 406
MhlI	GDGCHC	2 cut(s)	133, 317
MluCI	AATT	2 cut(s)	379, 533
MlyI	GAGTC	1 cut(s)	91
MseI	TTAA	3 cut(s)	297, 459, 519
MspR9I	CCNGG	2 cut(s)	326, 728
MvaI	CCWGG	2 cut(s)	326, 728
MwoI	GCNNNNNNNGC	2 cut(s)	161, 707
NdeII	GATC	3 cut(s)	73, 388, 406
NlaIII	CATG	3 cut(s)	492, 615, 651
NlaIV	GGNNCC	4 cut(s)	80, 148, 163, 235
NmuCI	GTSAC	2 cut(s)	176, 209
NspI	RCATGY	1 cut(s)	492
NspV	TTCGAA	1 cut(s)	604
PaeI	GCATGC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	3 cut(s)	177, 219, 245
PfeI	GAWTC	4 cut(s)	20, 62, 137, 338
PfoI	TCCNGGA	1 cut(s)	324
PkrI	GCNGC	4 cut(s)	40, 43, 502, 700
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
Psp124BI	GAGCTC	1 cut(s)	133
Psp6I	CCWGG	2 cut(s)	324, 726
PspGI	CCWGG	2 cut(s)	324, 726
PspN4I	GGNNCC	4 cut(s)	80, 148, 163, 235
PsuI	RGATCY	2 cut(s)	388, 406
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	3 cut(s)	297, 459, 519
SatI	GCNGC	4 cut(s)	39, 42, 501, 699
Sau3AI	GATC	3 cut(s)	73, 388, 406
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	2 cut(s)	326, 728
SduI	GDGCHC	2 cut(s)	133, 317
SetI	ASST	7 cut(s)	15, 40, 51, 133, 277, 732, 744
SfaNI	GCATC	2 cut(s)	359, 653
SfuI	TTCGAA	1 cut(s)	604
SphI	GCATGC	1 cut(s)	492
Sse9I	AATT	2 cut(s)	379, 533
SsiI	CCGC	3 cut(s)	41, 153, 207
SspI	AATATT	1 cut(s)	367
SspMI	CTAG	3 cut(s)	303, 392, 748
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	2 cut(s)	324, 726
TaaI	ACNGT	3 cut(s)	161, 176, 203
TaqI	TCGA	3 cut(s)	23, 114, 604
TasI	AATT	2 cut(s)	379, 533
TauI	GCSGC	1 cut(s)	44
TfiI	GAWTC	4 cut(s)	20, 62, 137, 338
Tru1I	TTAA	3 cut(s)	297, 459, 519
Tru9I	TTAA	3 cut(s)	297, 459, 519
TscAI	CASTG	4 cut(s)	125, 235, 403, 585
TseFI	GTSAC	2 cut(s)	176, 209
TseI	GCWGC	3 cut(s)	38, 500, 698
Tsp45I	GTSAC	2 cut(s)	176, 209
TspDTI	ATGAA	1 cut(s)	198
TspGWI	ACGGA	1 cut(s)	71
TspRI	CASTG	4 cut(s)	125, 235, 403, 585
XbaI	TCTAGA	1 cut(s)	302
XceI	RCATGY	1 cut(s)	492
XspI	CTAG	3 cut(s)	303, 392, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.