Rroxscaffold_3G00224370

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0005332
Physical Location & Seq
Reverse (-)
7464347 .. 7468060
3714 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00224370.1

Sequence Viewer

Length: 762 bp
ATGGAGGTGGAGGTCCCCGGTTCGAAACCCACGGCTGCGGCGGCGAGGCTGAGGAGAGGGGATTCCGAGGAGGATCGGCTCAGGGTGAAGAGGAAGACTCTGCAGGCCGTGCTTAACCAGTGCCAGAGAGCTCTTGAATCGCTCGGTACCACCGCCGGCGACGGTGTCGATGATGGTGATGACGATGAAGATGAAGAAGAAGATAGGGACGGTGCTGGTTCCGGTGGTGACGCCTTTGACGAAGGCGATGGCTCCACGACGACTTCTCGTGCTGACTGCGAAGCTGATGAGTTGTGCAATCTTCTTAAATCTAGAGTTGAGTGCCCAGACTTCCTGGAAAAGTTAGAATCTGCACAAGCATCAGTTCCACAAAATATTACCGAAGAAGGCAATTCTTGGGATGTAGTCAGTGAGAAAGATCTATGGGAATATGAGGATGACAACTTGGGTGAAGATGAGTATGTCCTTGTTAAGCAAGAAGATATAGTAGAGGGTATTGCATGCTTTATGGCTGCATACTTGTTGTCCCTTAAAGAGACTAAGGAGTTGACCCCTACTCAACTTCAGGAAGCCCTTAGCAAAACATTTTCAGTGAAAAAGAAGAAAGGAAAGCTTCGAAAGGCATGGGATGGAAGCAAAGTCATCTATAATGTAGCATCATGGGGAGCAACTGCCATTGGGATATATCAGAACCCCGTAATCGTAAGGGCTGCTACAAAAGCCTTCTGGACATCTTGCCAAGTTATATCAAAGCTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

253

Amino Acids

27.77

Weight (kDa)

4.47

Isoelectric Point (pI)

37.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 146
AccB1I GGYRCC 1 cut(s) 146
AciI CCGC 3 cut(s) 38, 41, 153
AclWI GGATC 1 cut(s) 81
AcuI CTGAAG 1 cut(s) 548
AcyI GRCGYC 1 cut(s) 231
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 1 cut(s) 333
AluBI AGCT 4 cut(s) 131, 284, 613, 754
AluI AGCT 4 cut(s) 131, 284, 613, 754
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 530
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 3 cut(s) 35, 512, 710
Asp718I GGTACC 1 cut(s) 146
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 1 cut(s) 18
AsuHPI GGTGA 4 cut(s) 97, 188, 239, 461
AsuII TTCGAA 2 cut(s) 23, 616
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 326
BanI GGYRCC 1 cut(s) 146
BanII GRGCYC 1 cut(s) 133
BauI CACGAG 1 cut(s) 267
BbsI GAAGAC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 3 cut(s) 22, 499, 697
BccI CCATC 3 cut(s) 167, 242, 623
BceAI ACGGC 2 cut(s) 48, 92
BciT130I CCWGG 1 cut(s) 335
BcnI CCSGG 1 cut(s) 18
BcoDI GTCTC 1 cut(s) 530
BfaI CTAG 2 cut(s) 312, 760
BfmI CTRYAG 1 cut(s) 101
BglII AGATCT 1 cut(s) 418
BisI GCNGC 5 cut(s) 36, 39, 42, 513, 711
BlsI GCNGC 5 cut(s) 37, 40, 43, 514, 712
Bme1390I CCNGG 2 cut(s) 18, 335
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 4 cut(s) 15, 148, 220, 253
BmrFI CCNGG 2 cut(s) 18, 335
BmsI GCATC 2 cut(s) 368, 665
BpiI GAAGAC 1 cut(s) 101
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu10I CCTNAGC 3 cut(s) 50, 80, 575
Bpu14I TTCGAA 2 cut(s) 23, 616
BpuMI CCSGG 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 231
BsaJI CCNNGG 3 cut(s) 16, 30, 66
BsaWI WCCGGW 1 cut(s) 221
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 335
BseDI CCNNGG 3 cut(s) 16, 30, 66
BseGI GGATG 3 cut(s) 406, 442, 634
BseMII CTCAG 2 cut(s) 41, 94
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 67, 83
BseSI GKGCMC 1 cut(s) 326
BseXI GCAGC 3 cut(s) 22, 499, 697
BsgI GTGCAG 1 cut(s) 336
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 1 cut(s) 146
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 3 cut(s) 18, 156, 222
BslFI GGGAC 2 cut(s) 221, 511
BsmAI GTCTC 1 cut(s) 530
BsmFI GGGAC 2 cut(s) 221, 511
BsnI GGCC 1 cut(s) 107
Bsp119I TTCGAA 2 cut(s) 23, 616
Bsp1286I GDGCHC 2 cut(s) 133, 326
Bsp143I GATC 2 cut(s) 73, 418
BspACI CCGC 3 cut(s) 38, 41, 153
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 42, 93
BspLI GGNNCC 4 cut(s) 15, 148, 220, 253
BspMAI CTGCAG 1 cut(s) 105
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 2 cut(s) 23, 616
BspT107I GGYRCC 1 cut(s) 146
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 3 cut(s) 16, 30, 66
BssMI GATC 2 cut(s) 73, 418
BssNI GRCGYC 1 cut(s) 231
BssSI CACGAG 1 cut(s) 267
Bst2BI CACGAG 1 cut(s) 267
Bst2UI CCWGG 1 cut(s) 335
Bst4CI ACNGT 2 cut(s) 164, 212
Bst6I CTCTTC 1 cut(s) 83
BstACI GRCGYC 1 cut(s) 231
BstAPI GCANNNNNTGC 1 cut(s) 109
BstBI TTCGAA 2 cut(s) 23, 616
BstC8I GCNNGC 3 cut(s) 105, 157, 502
BstDEI CTNAG 4 cut(s) 50, 80, 540, 575
BstDSI CCRYGG 1 cut(s) 30
BstF5I GGATG 3 cut(s) 406, 442, 634
BstKTI GATC 2 cut(s) 76, 421
BstMAI GTCTC 1 cut(s) 530
BstMBI GATC 2 cut(s) 73, 418
BstMWI GCNNNNNNNGC 3 cut(s) 41, 109, 719
BstNI CCWGG 1 cut(s) 335
BstNSI RCATGY 1 cut(s) 504
BstSCI CCNGG 2 cut(s) 16, 333
BstSFI CTRYAG 1 cut(s) 101
BstSLI GKGCMC 1 cut(s) 326
BstV1I GCAGC 3 cut(s) 22, 499, 697
BstV2I GAAGAC 1 cut(s) 101
BstX2I RGATCY 1 cut(s) 418
BstYI RGATCY 1 cut(s) 418
BsuRI GGCC 1 cut(s) 107
BtgI CCRYGG 1 cut(s) 30
BtgZI GCGATG 1 cut(s) 261
BtsCI GGATG 3 cut(s) 406, 442, 634
BtsIMutI CAGTG 3 cut(s) 125, 415, 597
Cac8I GCNNGC 3 cut(s) 105, 157, 502
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 1 cut(s) 239
Csp6I GTAC 1 cut(s) 147
CviAII CATG 3 cut(s) 501, 624, 660
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 4 cut(s) 50, 80, 540, 575
DpnI GATC 2 cut(s) 75, 420
DpnII GATC 2 cut(s) 73, 418
Eam1104I CTCTTC 1 cut(s) 83
EarI CTCTTC 1 cut(s) 83
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 1 cut(s) 548
EcoICRI GAGCTC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 333
EcoT38I GRGCYC 1 cut(s) 133
FaeI CATG 3 cut(s) 504, 627, 663
FalI AAGNNNNNCTT 2 cut(s) 597, 629
FaqI GGGAC 2 cut(s) 221, 511
FatI CATG 3 cut(s) 500, 623, 659
Fnu4HI GCNGC 5 cut(s) 36, 39, 42, 513, 711
FokI GGATG 3 cut(s) 413, 449, 641
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 5 cut(s) 36, 39, 42, 513, 711
FspBI CTAG 2 cut(s) 312, 760
GluI GCNGC 5 cut(s) 36, 39, 42, 513, 711
HaeIII GGCC 1 cut(s) 107
HapII CCGG 3 cut(s) 18, 156, 222
HgaI GACGC 1 cut(s) 239
Hin1I GRCGYC 1 cut(s) 231
Hin1II CATG 3 cut(s) 504, 627, 663
HincII GTYRAC 1 cut(s) 549
HindII GTYRAC 1 cut(s) 549
HindIII AAGCTT 2 cut(s) 611, 752
HinfI GANTC 4 cut(s) 62, 97, 137, 347
HpaII CCGG 3 cut(s) 18, 156, 222
HphI GGTGA 4 cut(s) 97, 188, 239, 461
Hpy166II GTNNAC 1 cut(s) 549
Hpy188I TCNGA 2 cut(s) 67, 690
Hpy188III TCNNGA 4 cut(s) 134, 312, 566, 727
Hpy8I GTNNAC 1 cut(s) 549
Hpy99I CGWCG 2 cut(s) 164, 262
HpyAV CCTTC 3 cut(s) 236, 380, 733
HpyCH4III ACNGT 2 cut(s) 164, 212
HpyCH4V TGCA 5 cut(s) 103, 297, 353, 500, 515
HpyF10VI GCNNNNNNNGC 3 cut(s) 41, 109, 719
HpyF3I CTNAG 4 cut(s) 50, 80, 540, 575
Hsp92I GRCGYC 1 cut(s) 231
Hsp92II CATG 3 cut(s) 504, 627, 663
KpnI GGTACC 1 cut(s) 150
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 73, 418
LmnI GCTCC 2 cut(s) 257, 665
Lsp1109I GCAGC 3 cut(s) 22, 499, 697
LweI GCATC 2 cut(s) 368, 665
MaeI CTAG 2 cut(s) 312, 760
MaeIII GTNAC 1 cut(s) 227
MalI GATC 2 cut(s) 75, 420
MboI GATC 2 cut(s) 73, 418
MflI RGATCY 1 cut(s) 418
MhlI GDGCHC 2 cut(s) 133, 326
MluCI AATT 1 cut(s) 391
MlyI GAGTC 1 cut(s) 91
MnlI CCTC 9 cut(s) 4, 39, 45, 50, 61, 64, 84, 427, 484
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 155
MseI TTAA 4 cut(s) 114, 306, 471, 531
MspI CCGG 3 cut(s) 18, 156, 222
MspR9I CCNGG 2 cut(s) 18, 335
MvaI CCWGG 1 cut(s) 335
MwoI GCNNNNNNNGC 3 cut(s) 41, 109, 719
NaeI GCCGGC 1 cut(s) 157
NciI CCSGG 1 cut(s) 18
NdeII GATC 2 cut(s) 73, 418
NgoMIV GCCGGC 1 cut(s) 155
NlaIII CATG 3 cut(s) 504, 627, 663
NlaIV GGNNCC 4 cut(s) 15, 148, 220, 253
NmuCI GTSAC 1 cut(s) 227
NspI RCATGY 1 cut(s) 504
NspV TTCGAA 2 cut(s) 23, 616
PaeI GCATGC 1 cut(s) 504
PcsI WCGNNNNNNNCGW 1 cut(s) 237
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 3 cut(s) 62, 137, 347
PflFI GACNNNGTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 5 cut(s) 37, 40, 43, 514, 712
PleI GAGTC 1 cut(s) 91
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 333
PspGI CCWGG 1 cut(s) 333
PspN4I GGNNCC 4 cut(s) 15, 148, 220, 253
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
PstI CTGCAG 1 cut(s) 105
PsuI RGATCY 1 cut(s) 418
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 4 cut(s) 114, 306, 471, 531
SatI GCNGC 5 cut(s) 36, 39, 42, 513, 711
Sau3AI GATC 2 cut(s) 73, 418
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 2 cut(s) 18, 335
SduI GDGCHC 2 cut(s) 133, 326
SetI ASST 6 cut(s) 9, 15, 133, 286, 615, 756
SfaNI GCATC 2 cut(s) 368, 665
SfcI CTRYAG 1 cut(s) 101
SfuI TTCGAA 2 cut(s) 23, 616
SgrAI CRCCGGYG 1 cut(s) 155
SinI GGWCC 1 cut(s) 13
SphI GCATGC 1 cut(s) 504
Sse9I AATT 1 cut(s) 391
SsiI CCGC 3 cut(s) 38, 41, 153
SspI AATATT 1 cut(s) 376
SspMI CTAG 2 cut(s) 312, 760
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 2 cut(s) 16, 333
TaaI ACNGT 2 cut(s) 164, 212
TaqI TCGA 3 cut(s) 23, 168, 616
TasI AATT 1 cut(s) 391
TauI GCSGC 2 cut(s) 41, 44
TfiI GAWTC 3 cut(s) 62, 137, 347
Tru1I TTAA 4 cut(s) 114, 306, 471, 531
Tru9I TTAA 4 cut(s) 114, 306, 471, 531
TscAI CASTG 3 cut(s) 125, 415, 597
TseFI GTSAC 1 cut(s) 227
TseI GCWGC 3 cut(s) 35, 512, 710
Tsp45I GTSAC 1 cut(s) 227
TspDTI ATGAA 2 cut(s) 201, 207
TspRI CASTG 3 cut(s) 125, 415, 597
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 13
XbaI TCTAGA 1 cut(s) 311
XceI RCATGY 1 cut(s) 504
XspI CTAG 2 cut(s) 312, 760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.