Rh7CG476500

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0005332
Physical Location & Seq
Forward (+)
64048815 .. 64051326
2512 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG476500.1

Sequence Viewer

Length: 606 bp
ATGGAGGTGGAGGTCCCCGGTTCGAAACCCTCGGCTGCGGCGCCGAGGCTGAGGAGAGGGGATTCCGAGGAGGATCGGCTCAGGGTGAAGAGGAAGACTCTTCAGGCCGTGCTTAACCAGTGCCAGAGAGCTCTTGAATCGCTCGGTACCACCGCCGGCGACGGTGTCGATGATGGTGATGACGATGAAGACGATGAAGAAGAAGATAGGGACGGTGCTGGTTCTGGTGGTGACGCCTTTGACGAAGGCGGTGGCTCCACGACGACTTCTCGTGCTGACTGCGAAGCTGATGAGTTGTGCAATCTTCTTAAATCTAGAGTTGAGTGCCCGGACTTCCTGGAAAAGTTAGAATCTGCACAAGCATCACTTCCACAAAATATTACCGAAGAAGGCAATTCTTGGGATGTAGTCAGTGAGAAAGATCTATGGGAATATGAGGATGACAACTTGGGTGAAGATGAGTATGTCCTTGTTAAGCAAGAAGATATAGTAGAGGGTATTGCGTGCTTTATGGCTGCATACTTGTTGTCCCTTAAAGAGACTAAGGAGTTGACCCCTACTCAACTTCAGGAAGGTGAGCTTCATATTTGTTTCTTATGTTACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

201

Amino Acids

22.12

Weight (kDa)

4.08

Isoelectric Point (pI)

50.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 146
AccB1I GGYRCC 2 cut(s) 40, 146
AciI CCGC 3 cut(s) 38, 153, 249
AclWI GGATC 1 cut(s) 81
AcuI CTGAAG 2 cut(s) 86, 551
AcyI GRCGYC 2 cut(s) 41, 234
AfaI GTAC 1 cut(s) 148
AgsI TTSAA 1 cut(s) 137
AjnI CCWGG 1 cut(s) 336
AluBI AGCT 3 cut(s) 131, 287, 580
AluI AGCT 3 cut(s) 131, 287, 580
Alw21I GWGCWC 1 cut(s) 133
Alw26I GTCTC 1 cut(s) 533
AlwI GGATC 1 cut(s) 81
AoxI GGCC 1 cut(s) 105
ApeKI GCWGC 2 cut(s) 35, 515
Asp718I GGTACC 1 cut(s) 146
AspLEI GCGC 1 cut(s) 43
AspS9I GGNCC 1 cut(s) 13
AsuC2I CCSGG 2 cut(s) 18, 329
AsuHPI GGTGA 5 cut(s) 97, 188, 242, 464, 587
AsuII TTCGAA 1 cut(s) 23
AvaII GGWCC 1 cut(s) 13
BaeGI GKGCMC 1 cut(s) 329
BanI GGYRCC 2 cut(s) 40, 146
BanII GRGCYC 1 cut(s) 133
BauI CACGAG 1 cut(s) 270
BbsI GAAGAC 2 cut(s) 101, 195
Bbv12I GWGCWC 1 cut(s) 133
BbvCI CCTCAGC 1 cut(s) 50
BbvI GCAGC 2 cut(s) 22, 502
BccI CCATC 1 cut(s) 167
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 338
BcnI CCSGG 2 cut(s) 18, 329
BcoDI GTCTC 1 cut(s) 533
BfaI CTAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 44
BglII AGATCT 1 cut(s) 421
BisI GCNGC 3 cut(s) 36, 39, 516
BlsI GCNGC 3 cut(s) 37, 40, 517
Bme1390I CCNGG 3 cut(s) 18, 329, 338
Bme18I GGWCC 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 13
BmiI GGNNCC 4 cut(s) 15, 42, 148, 256
BmrFI CCNGG 3 cut(s) 18, 329, 338
BmsI GCATC 1 cut(s) 371
BpiI GAAGAC 2 cut(s) 101, 195
BplI GAGNNNNNCTC 2 cut(s) 82, 114
Bpu10I CCTNAGC 2 cut(s) 50, 80
Bpu14I TTCGAA 1 cut(s) 23
BpuMI CCSGG 2 cut(s) 18, 329
BsaHI GRCGYC 2 cut(s) 41, 234
BsaJI CCNNGG 4 cut(s) 16, 30, 44, 66
Bse118I RCCGGY 1 cut(s) 155
Bse1I ACTGG 1 cut(s) 118
BseBI CCWGG 1 cut(s) 338
BseDI CCNNGG 4 cut(s) 16, 30, 44, 66
BseGI GGATG 2 cut(s) 409, 445
BseMII CTCAG 2 cut(s) 41, 94
BseNI ACTGG 1 cut(s) 118
BseRI GAGGAG 2 cut(s) 67, 83
BseSI GKGCMC 1 cut(s) 329
BseXI GCAGC 2 cut(s) 22, 502
BsgI GTGCAG 1 cut(s) 339
BshFI GGCC 1 cut(s) 107
BshNI GGYRCC 2 cut(s) 40, 146
BsiHKAI GWGCWC 1 cut(s) 133
BsiSI CCGG 3 cut(s) 18, 156, 329
BslFI GGGAC 2 cut(s) 224, 514
BsmAI GTCTC 1 cut(s) 533
BsmFI GGGAC 2 cut(s) 224, 514
BsnI GGCC 1 cut(s) 107
Bsp119I TTCGAA 1 cut(s) 23
Bsp1286I GDGCHC 2 cut(s) 133, 329
Bsp143I GATC 2 cut(s) 73, 421
BspACI CCGC 3 cut(s) 38, 153, 249
BspANI GGCC 1 cut(s) 107
BspCNI CTCAG 2 cut(s) 42, 93
BspLI GGNNCC 4 cut(s) 15, 42, 148, 256
BspPI GGATC 1 cut(s) 81
BspT104I TTCGAA 1 cut(s) 23
BspT107I GGYRCC 2 cut(s) 40, 146
BsrFI RCCGGY 1 cut(s) 155
BsrI ACTGG 1 cut(s) 118
BssAI RCCGGY 1 cut(s) 155
BssECI CCNNGG 4 cut(s) 16, 30, 44, 66
BssMI GATC 2 cut(s) 73, 421
BssNI GRCGYC 2 cut(s) 41, 234
BssSI CACGAG 1 cut(s) 270
Bst2BI CACGAG 1 cut(s) 270
Bst2UI CCWGG 1 cut(s) 338
Bst4CI ACNGT 2 cut(s) 164, 215
Bst6I CTCTTC 2 cut(s) 83, 105
BstACI GRCGYC 2 cut(s) 41, 234
BstBI TTCGAA 1 cut(s) 23
BstC8I GCNNGC 2 cut(s) 157, 505
BstDEI CTNAG 3 cut(s) 50, 80, 543
BstF5I GGATG 2 cut(s) 409, 445
BstH2I RGCGCY 1 cut(s) 44
BstHHI GCGC 1 cut(s) 43
BstKTI GATC 2 cut(s) 76, 424
BstMAI GTCTC 1 cut(s) 533
BstMBI GATC 2 cut(s) 73, 421
BstNI CCWGG 1 cut(s) 338
BstSCI CCNGG 3 cut(s) 16, 327, 336
BstSLI GKGCMC 1 cut(s) 329
BstV1I GCAGC 2 cut(s) 22, 502
BstV2I GAAGAC 2 cut(s) 101, 195
BstX2I RGATCY 1 cut(s) 421
BstYI RGATCY 1 cut(s) 421
BsuRI GGCC 1 cut(s) 107
BtsCI GGATG 2 cut(s) 409, 445
BtsIMutI CAGTG 2 cut(s) 125, 418
Cac8I GCNNGC 2 cut(s) 157, 505
CfoI GCGC 1 cut(s) 43
Cfr10I RCCGGY 1 cut(s) 155
Cfr13I GGNCC 1 cut(s) 13
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 147
CviJI RGCY 9 cut(s) 35, 49, 79, 107, 131, 255, 287, 515, 580
CviKI_1 RGCY 9 cut(s) 35, 49, 79, 107, 131, 255, 287, 515, 580
CviQI GTAC 1 cut(s) 147
DdeI CTNAG 3 cut(s) 50, 80, 543
DinI GGCGCC 1 cut(s) 42
DpnI GATC 2 cut(s) 75, 423
DpnII GATC 2 cut(s) 73, 421
Eam1104I CTCTTC 2 cut(s) 83, 105
EarI CTCTTC 2 cut(s) 83, 105
Ecl136II GAGCTC 1 cut(s) 131
Eco24I GRGCYC 1 cut(s) 133
Eco47I GGWCC 1 cut(s) 13
Eco53kI GAGCTC 1 cut(s) 131
Eco57I CTGAAG 2 cut(s) 86, 551
EcoICRI GAGCTC 1 cut(s) 131
EcoO109I RGGNCCY 1 cut(s) 13
EcoRII CCWGG 1 cut(s) 336
EcoT38I GRGCYC 1 cut(s) 133
EgeI GGCGCC 1 cut(s) 42
EheI GGCGCC 1 cut(s) 42
FaiI YATR 8 cut(s) 427, 435, 465, 488, 512, 520, 585, 598
FalI AAGNNNNNCTT 4 cut(s) 351, 383, 564, 596
FaqI GGGAC 2 cut(s) 224, 514
Fnu4HI GCNGC 3 cut(s) 36, 39, 516
FokI GGATG 2 cut(s) 416, 452
FriOI GRGCYC 1 cut(s) 133
Fsp4HI GCNGC 3 cut(s) 36, 39, 516
FspBI CTAG 1 cut(s) 315
GlaI GCGC 1 cut(s) 42
GluI GCNGC 3 cut(s) 36, 39, 516
HaeII RGCGCY 1 cut(s) 44
HaeIII GGCC 1 cut(s) 107
HapII CCGG 3 cut(s) 18, 156, 329
HgaI GACGC 1 cut(s) 242
HhaI GCGC 1 cut(s) 43
Hin1I GRCGYC 2 cut(s) 41, 234
Hin6I GCGC 1 cut(s) 41
HinP1I GCGC 1 cut(s) 41
HincII GTYRAC 1 cut(s) 552
HindII GTYRAC 1 cut(s) 552
HinfI GANTC 4 cut(s) 62, 97, 137, 350
HpaII CCGG 3 cut(s) 18, 156, 329
HphI GGTGA 5 cut(s) 97, 188, 242, 464, 587
Hpy166II GTNNAC 1 cut(s) 552
Hpy188I TCNGA 1 cut(s) 67
Hpy188III TCNNGA 3 cut(s) 134, 315, 569
Hpy8I GTNNAC 1 cut(s) 552
Hpy99I CGWCG 2 cut(s) 164, 265
HpyAV CCTTC 3 cut(s) 239, 383, 566
HpyCH4III ACNGT 2 cut(s) 164, 215
HpyCH4V TGCA 3 cut(s) 300, 356, 518
HpyF3I CTNAG 3 cut(s) 50, 80, 543
Hsp92I GRCGYC 2 cut(s) 41, 234
HspAI GCGC 1 cut(s) 41
KasI GGCGCC 1 cut(s) 40
KpnI GGTACC 1 cut(s) 150
KroI GCCGGC 1 cut(s) 155
KroNI GCCGGC 1 cut(s) 157
Kzo9I GATC 2 cut(s) 73, 421
LmnI GCTCC 1 cut(s) 260
Lsp1109I GCAGC 2 cut(s) 22, 502
LweI GCATC 1 cut(s) 371
MaeI CTAG 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 230, 599
MalI GATC 2 cut(s) 75, 423
MboI GATC 2 cut(s) 73, 421
MflI RGATCY 1 cut(s) 421
MhlI GDGCHC 2 cut(s) 133, 329
MluCI AATT 1 cut(s) 394
Mly113I GGCGCC 1 cut(s) 41
MlyI GAGTC 1 cut(s) 91
MreI CGCCGGCG 1 cut(s) 155
MroNI GCCGGC 1 cut(s) 155
MseI TTAA 4 cut(s) 114, 309, 474, 534
MspI CCGG 3 cut(s) 18, 156, 329
MspR9I CCNGG 3 cut(s) 18, 329, 338
MvaI CCWGG 1 cut(s) 338
NaeI GCCGGC 1 cut(s) 157
NarI GGCGCC 1 cut(s) 41
NciI CCSGG 2 cut(s) 18, 329
NdeII GATC 2 cut(s) 73, 421
NgoMIV GCCGGC 1 cut(s) 155
NlaIV GGNNCC 4 cut(s) 15, 42, 148, 256
NmeAIII GCCGAG 2 cut(s) 11, 69
NmuCI GTSAC 1 cut(s) 230
NspV TTCGAA 1 cut(s) 23
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 240
PdiI GCCGGC 1 cut(s) 157
PfeI GAWTC 3 cut(s) 62, 137, 350
PflFI GACNNNGTC 1 cut(s) 164
PfoI TCCNGGA 1 cut(s) 336
PkrI GCNGC 3 cut(s) 37, 40, 517
PleI GAGTC 1 cut(s) 91
PluTI GGCGCC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 91
PpuMI RGGWCCY 1 cut(s) 13
Psp124BI GAGCTC 1 cut(s) 133
Psp5II RGGWCCY 1 cut(s) 13
Psp6I CCWGG 1 cut(s) 336
PspGI CCWGG 1 cut(s) 336
PspN4I GGNNCC 4 cut(s) 15, 42, 148, 256
PspPI GGNCC 1 cut(s) 13
PspPPI RGGWCCY 1 cut(s) 13
PsuI RGATCY 1 cut(s) 421
PsyI GACNNNGTC 1 cut(s) 164
RsaI GTAC 1 cut(s) 148
RsaNI GTAC 1 cut(s) 147
SacI GAGCTC 1 cut(s) 133
SaqAI TTAA 4 cut(s) 114, 309, 474, 534
SatI GCNGC 3 cut(s) 36, 39, 516
Sau3AI GATC 2 cut(s) 73, 421
Sau96I GGNCC 1 cut(s) 13
SchI GAGTC 1 cut(s) 91
ScrFI CCNGG 3 cut(s) 18, 329, 338
SduI GDGCHC 2 cut(s) 133, 329
SetI ASST 6 cut(s) 9, 15, 133, 289, 577, 582
SfaNI GCATC 1 cut(s) 371
SfoI GGCGCC 1 cut(s) 42
SfuI TTCGAA 1 cut(s) 23
SgrAI CRCCGGYG 1 cut(s) 155
SinI GGWCC 1 cut(s) 13
Sse9I AATT 1 cut(s) 394
SsiI CCGC 3 cut(s) 38, 153, 249
SspDI GGCGCC 1 cut(s) 40
SspI AATATT 1 cut(s) 379
SspMI CTAG 1 cut(s) 315
SstI GAGCTC 1 cut(s) 133
StyD4I CCNGG 3 cut(s) 16, 327, 336
TaaI ACNGT 2 cut(s) 164, 215
TaqI TCGA 2 cut(s) 23, 168
TasI AATT 1 cut(s) 394
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 3 cut(s) 62, 137, 350
Tru1I TTAA 4 cut(s) 114, 309, 474, 534
Tru9I TTAA 4 cut(s) 114, 309, 474, 534
TscAI CASTG 2 cut(s) 125, 418
TseFI GTSAC 1 cut(s) 230
TseI GCWGC 2 cut(s) 35, 515
Tsp45I GTSAC 1 cut(s) 230
TspDTI ATGAA 3 cut(s) 201, 210, 572
TspRI CASTG 2 cut(s) 125, 418
Tth111I GACNNNGTC 1 cut(s) 164
VpaK11BI GGWCC 1 cut(s) 13
XbaI TCTAGA 1 cut(s) 314
XspI CTAG 1 cut(s) 315
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.