RLG00000001024

isoform X1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0005332
Physical Location & Seq
Reverse (-)
9298122 .. 9300698
2577 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001024

Sequence Viewer

Length: 504 bp
ATGGGAAATGTTGCATTTGATAACTCTAGGAAGTTATGCAATCTTCTTAAATCTAGAGTTGAGTGCCCAGACTTCCTGGAAAAGTTAGAATCTGCACAAGCATCAGTTCCACAAAATATTACCGAAGAAGGCAATTCTTGGGATGTAGTGAGTGAGAAAGATCTATGGGAATATGAGGATGACAACTTGGGTGAAGATGAGTATGTCCTTGTTAAGCAAGAAGATATAGTAGAGGGTATTGCATGCTTTATGGCTGCATACTTGTTGTCCCTTAAAGAGACTAAGGAGTTGACCCCTACTCAACTTCAGGAAGCCCTTAGCAAAACATTTTCAGTGAAAAAGAAGAAAGGAAAGCTTCGAAAGGCATGGGATGGAAGCAAAGTCATCTATAATGTAGCATCATGGGGAGCAACTGCCATTGGGATATATCAGAACCCTGTAATCGTAAGGGCTGCTACAAAAGCCTTCTGGACATCTTGCCAAGTTATATCAAAGCTTCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

168

Amino Acids

18.76

Weight (kDa)

5.18

Isoelectric Point (pI)

32.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 290
AjnI CCWGG 1 cut(s) 75
AluBI AGCT 2 cut(s) 355, 496
AluI AGCT 2 cut(s) 355, 496
Alw26I GTCTC 1 cut(s) 272
ApeKI GCWGC 2 cut(s) 254, 452
AsuHPI GGTGA 1 cut(s) 203
AsuII TTCGAA 1 cut(s) 358
BaeGI GKGCMC 1 cut(s) 68
BbvI GCAGC 2 cut(s) 241, 439
BccI CCATC 1 cut(s) 365
BciT130I CCWGG 1 cut(s) 77
BcoDI GTCTC 1 cut(s) 272
BfaI CTAG 3 cut(s) 27, 54, 502
BglII AGATCT 1 cut(s) 160
BisI GCNGC 2 cut(s) 255, 453
BlsI GCNGC 2 cut(s) 256, 454
Bme1390I CCNGG 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 77
BmsI GCATC 2 cut(s) 110, 407
Bpu10I CCTNAGC 1 cut(s) 317
Bpu14I TTCGAA 1 cut(s) 358
BseBI CCWGG 1 cut(s) 77
BseGI GGATG 3 cut(s) 148, 184, 376
BseSI GKGCMC 1 cut(s) 68
BseXI GCAGC 2 cut(s) 241, 439
BsgI GTGCAG 1 cut(s) 78
BslFI GGGAC 1 cut(s) 253
BsmAI GTCTC 1 cut(s) 272
BsmFI GGGAC 1 cut(s) 253
Bsp119I TTCGAA 1 cut(s) 358
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 160
BspT104I TTCGAA 1 cut(s) 358
BssMI GATC 1 cut(s) 160
Bst2UI CCWGG 1 cut(s) 77
BstBI TTCGAA 1 cut(s) 358
BstC8I GCNNGC 1 cut(s) 244
BstDEI CTNAG 2 cut(s) 282, 317
BstF5I GGATG 3 cut(s) 148, 184, 376
BstKTI GATC 1 cut(s) 163
BstMAI GTCTC 1 cut(s) 272
BstMBI GATC 1 cut(s) 160
BstMWI GCNNNNNNNGC 1 cut(s) 461
BstNI CCWGG 1 cut(s) 77
BstNSI RCATGY 1 cut(s) 246
BstSCI CCNGG 1 cut(s) 75
BstSLI GKGCMC 1 cut(s) 68
BstV1I GCAGC 2 cut(s) 241, 439
BstX2I RGATCY 1 cut(s) 160
BstYI RGATCY 1 cut(s) 160
BtsCI GGATG 3 cut(s) 148, 184, 376
BtsIMutI CAGTG 1 cut(s) 339
Cac8I GCNNGC 1 cut(s) 244
CviAII CATG 3 cut(s) 243, 366, 402
CviJI RGCY 6 cut(s) 254, 314, 355, 452, 464, 496
CviKI_1 RGCY 6 cut(s) 254, 314, 355, 452, 464, 496
DdeI CTNAG 2 cut(s) 282, 317
DpnI GATC 1 cut(s) 162
DpnII GATC 1 cut(s) 160
Eco57I CTGAAG 1 cut(s) 290
EcoRII CCWGG 1 cut(s) 75
FaeI CATG 3 cut(s) 246, 369, 405
FalI AAGNNNNNCTT 2 cut(s) 339, 371
FaqI GGGAC 1 cut(s) 253
FatI CATG 3 cut(s) 242, 365, 401
Fnu4HI GCNGC 2 cut(s) 255, 453
FokI GGATG 3 cut(s) 155, 191, 383
Fsp4HI GCNGC 2 cut(s) 255, 453
FspBI CTAG 3 cut(s) 27, 54, 502
GluI GCNGC 2 cut(s) 255, 453
Hin1II CATG 3 cut(s) 246, 369, 405
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HindIII AAGCTT 2 cut(s) 353, 494
HinfI GANTC 1 cut(s) 89
HphI GGTGA 1 cut(s) 203
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 1 cut(s) 432
Hpy188III TCNNGA 3 cut(s) 54, 308, 469
Hpy8I GTNNAC 1 cut(s) 291
HpyAV CCTTC 2 cut(s) 122, 475
HpyCH4V TGCA 5 cut(s) 14, 39, 95, 242, 257
HpyF10VI GCNNNNNNNGC 1 cut(s) 461
HpyF3I CTNAG 2 cut(s) 282, 317
Hsp92II CATG 3 cut(s) 246, 369, 405
Kzo9I GATC 1 cut(s) 160
LmnI GCTCC 1 cut(s) 407
LpnPI CCDG 6 cut(s) 62, 81, 89, 293, 450, 454
Lsp1109I GCAGC 2 cut(s) 241, 439
LweI GCATC 2 cut(s) 110, 407
MaeI CTAG 3 cut(s) 27, 54, 502
MalI GATC 1 cut(s) 162
MboI GATC 1 cut(s) 160
MboII GAAGA 5 cut(s) 35, 137, 206, 233, 355
MflI RGATCY 1 cut(s) 160
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 1 cut(s) 133
MnlI CCTC 2 cut(s) 169, 226
MseI TTAA 3 cut(s) 48, 213, 273
MspR9I CCNGG 1 cut(s) 77
MvaI CCWGG 1 cut(s) 77
MwoI GCNNNNNNNGC 1 cut(s) 461
NdeII GATC 1 cut(s) 160
NlaIII CATG 3 cut(s) 246, 369, 405
NspI RCATGY 1 cut(s) 246
NspV TTCGAA 1 cut(s) 358
PaeI GCATGC 1 cut(s) 246
PfeI GAWTC 1 cut(s) 89
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 2 cut(s) 256, 454
Psp6I CCWGG 1 cut(s) 75
PspGI CCWGG 1 cut(s) 75
PsuI RGATCY 1 cut(s) 160
SaqAI TTAA 3 cut(s) 48, 213, 273
SatI GCNGC 2 cut(s) 255, 453
Sau3AI GATC 1 cut(s) 160
ScrFI CCNGG 1 cut(s) 77
SduI GDGCHC 1 cut(s) 68
SetI ASST 2 cut(s) 357, 498
SfaNI GCATC 2 cut(s) 110, 407
SfuI TTCGAA 1 cut(s) 358
SphI GCATGC 1 cut(s) 246
Sse9I AATT 1 cut(s) 133
SspI AATATT 1 cut(s) 118
SspMI CTAG 3 cut(s) 27, 54, 502
StyD4I CCNGG 1 cut(s) 75
TaqI TCGA 1 cut(s) 358
TasI AATT 1 cut(s) 133
TfiI GAWTC 1 cut(s) 89
Tru1I TTAA 3 cut(s) 48, 213, 273
Tru9I TTAA 3 cut(s) 48, 213, 273
TscAI CASTG 1 cut(s) 339
TseI GCWGC 2 cut(s) 254, 452
TspRI CASTG 1 cut(s) 339
XbaI TCTAGA 1 cut(s) 53
XceI RCATGY 1 cut(s) 246
XspI CTAG 3 cut(s) 27, 54, 502
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.