Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0005332

Physical Location & Seq

Genomic Coordinates Forward (+)

63137080 .. 63140804

Gene Structure 3725 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG458800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGGTGGAGGTCCCCGGTTCGAAACCCTCGGCTGCGGCGGCGAGGCTGAGGAGAGGGGATTCCGAGGAGGATCGGCTCAGGGTGAAGAGGAAGACTCTTCAGGCCGTGCTTAACCAGTGCCAGAGAGCTCTTGAATCGCTCGGTACCACCTCCGGCGACGGTGTCGATGATGGTGATGACGATGACGATGAAGAAGAAGATAGGGACGGTGCTGGTTCTGGTGGTGACGCCTTTGACGAAGGCGGTGGCTCCACGACGACTTCTCGTGCTGACTGCGAAGCTGATGAGTTGTGCGATCTTCTTAAATCTAGAGTTGAGTGCCCAGACTTCCTGCAAAAGTTAGAATCTGCACAAGCATCAGTTCCACAAAATATTACTGAAGAAGGCAATTCTTGGGATGTAGTCAGTGAGAAAGATCTATGGGAATATGAGGATGACAACTTGGGTGAAGATGAGTATGTCCTTGTTAAGCAAGAAGATATAGTAGAGGGTATTGCGTGCTTTATGGCTGCATACTTGTTGTCCCTTAAAGAGACTAAGGTATCCTATAACTCTGATTACCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

189

Amino Acids

20.71

Weight (kDa)

4.1

Isoelectric Point (pI)

50.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005332)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT4G24590 AT5G49710 AT5G49710 AT5G49710
fragaria_vesca	FvH4_5g35650 FvH4_5g35650 FvH4_5g35650 FvH4_5g35650
malus_domestica	MD08G1195200.v1.1 MD15G1382900.v1.1
prunus_persica	Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1 Prupe.1G528700_v2.0.a1
pyrus_communis	pycom15g34270
rosa_chinensis	RchiOBHm_Chr7g0237181
rosa_laevigata	RLG00000001024
rosa_multiflora	Rmu_sc0011019.1_g000011
rosa_roxburghii	Rroxscaffold_3G00224370
rosa_rugosa	Rorug07G0302500 Rorug07G0302600
rosa_samantha	Rh7AG458800 Rh7BG429300 Rh7CG476500 Rh7DG445800
rosa_wichuraiana	Rw7G038000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	146
AccB1I	GGYRCC	1 cut(s)	146
AciI	CCGC	3 cut(s)	38, 41, 246
AclWI	GGATC	1 cut(s)	81
AcuI	CTGAAG	2 cut(s)	86, 402
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	1 cut(s)	148
AgsI	TTSAA	1 cut(s)	137
AluBI	AGCT	2 cut(s)	131, 284
AluI	AGCT	2 cut(s)	131, 284
Alw21I	GWGCWC	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	530
AlwI	GGATC	1 cut(s)	81
AoxI	GGCC	1 cut(s)	105
ApeKI	GCWGC	2 cut(s)	35, 512
Asp718I	GGTACC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	13
AsuC2I	CCSGG	1 cut(s)	18
AsuHPI	GGTGA	4 cut(s)	97, 188, 239, 461
AsuII	TTCGAA	1 cut(s)	23
AvaII	GGWCC	1 cut(s)	13
BaeGI	GKGCMC	1 cut(s)	326
BaeI	ACNNNNGTAYC	2 cut(s)	528, 561
BanI	GGYRCC	1 cut(s)	146
BanII	GRGCYC	1 cut(s)	133
BauI	CACGAG	1 cut(s)	267
BbsI	GAAGAC	1 cut(s)	101
Bbv12I	GWGCWC	1 cut(s)	133
BbvCI	CCTCAGC	1 cut(s)	50
BbvI	GCAGC	2 cut(s)	22, 499
BccI	CCATC	1 cut(s)	167
BceAI	ACGGC	1 cut(s)	92
BciVI	GTATCC	1 cut(s)	556
BcnI	CCSGG	1 cut(s)	18
BcoDI	GTCTC	1 cut(s)	530
BfaI	CTAG	1 cut(s)	312
BfuI	GTATCC	1 cut(s)	556
BglII	AGATCT	1 cut(s)	418
BisI	GCNGC	4 cut(s)	36, 39, 42, 513
BlsI	GCNGC	4 cut(s)	37, 40, 43, 514
Bme1390I	CCNGG	1 cut(s)	18
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmiI	GGNNCC	3 cut(s)	15, 148, 253
BmrFI	CCNGG	1 cut(s)	18
BmsI	GCATC	1 cut(s)	368
BpiI	GAAGAC	1 cut(s)	101
BplI	GAGNNNNNCTC	2 cut(s)	82, 114
Bpu10I	CCTNAGC	2 cut(s)	50, 80
Bpu14I	TTCGAA	1 cut(s)	23
BpuMI	CCSGG	1 cut(s)	18
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	3 cut(s)	16, 30, 66
Bse1I	ACTGG	1 cut(s)	118
BseDI	CCNNGG	3 cut(s)	16, 30, 66
BseGI	GGATG	2 cut(s)	406, 442
BseMII	CTCAG	2 cut(s)	41, 94
BseNI	ACTGG	1 cut(s)	118
BseRI	GAGGAG	2 cut(s)	67, 83
BseSI	GKGCMC	1 cut(s)	326
BseXI	GCAGC	2 cut(s)	22, 499
BsgI	GTGCAG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	107
BshNI	GGYRCC	1 cut(s)	146
BsiHKAI	GWGCWC	1 cut(s)	133
BsiSI	CCGG	2 cut(s)	18, 156
BslFI	GGGAC	2 cut(s)	221, 511
BsmAI	GTCTC	1 cut(s)	530
BsmFI	GGGAC	2 cut(s)	221, 511
BsnI	GGCC	1 cut(s)	107
Bsp119I	TTCGAA	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	133, 326
Bsp143I	GATC	3 cut(s)	73, 298, 418
BspACI	CCGC	3 cut(s)	38, 41, 246
BspANI	GGCC	1 cut(s)	107
BspCNI	CTCAG	2 cut(s)	42, 93
BspLI	GGNNCC	3 cut(s)	15, 148, 253
BspPI	GGATC	1 cut(s)	81
BspT104I	TTCGAA	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	146
BsrI	ACTGG	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	16, 30, 66
BssMI	GATC	3 cut(s)	73, 298, 418
BssNI	GRCGYC	1 cut(s)	231
BssSI	CACGAG	1 cut(s)	267
Bst2BI	CACGAG	1 cut(s)	267
Bst4CI	ACNGT	2 cut(s)	164, 212
Bst6I	CTCTTC	2 cut(s)	83, 105
BstACI	GRCGYC	1 cut(s)	231
BstBI	TTCGAA	1 cut(s)	23
BstC8I	GCNNGC	1 cut(s)	502
BstDEI	CTNAG	3 cut(s)	50, 80, 540
BstF5I	GGATG	2 cut(s)	406, 442
BstKTI	GATC	3 cut(s)	76, 301, 421
BstMAI	GTCTC	1 cut(s)	530
BstMBI	GATC	3 cut(s)	73, 298, 418
BstMWI	GCNNNNNNNGC	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	326
BstV1I	GCAGC	2 cut(s)	22, 499
BstV2I	GAAGAC	1 cut(s)	101
BstX2I	RGATCY	1 cut(s)	418
BstYI	RGATCY	1 cut(s)	418
BsuI	GTATCC	1 cut(s)	556
BsuRI	GGCC	1 cut(s)	107
BtsCI	GGATG	2 cut(s)	406, 442
BtsIMutI	CAGTG	2 cut(s)	125, 415
Cac8I	GCNNGC	1 cut(s)	502
Cfr13I	GGNCC	1 cut(s)	13
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	1 cut(s)	147
CviJI	RGCY	8 cut(s)	35, 49, 79, 107, 131, 252, 284, 512
CviKI_1	RGCY	8 cut(s)	35, 49, 79, 107, 131, 252, 284, 512
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	50, 80, 540
DpnI	GATC	3 cut(s)	75, 300, 420
DpnII	GATC	3 cut(s)	73, 298, 418
Eam1104I	CTCTTC	2 cut(s)	83, 105
EarI	CTCTTC	2 cut(s)	83, 105
Ecl136II	GAGCTC	1 cut(s)	131
Eco24I	GRGCYC	1 cut(s)	133
Eco47I	GGWCC	1 cut(s)	13
Eco53kI	GAGCTC	1 cut(s)	131
Eco57I	CTGAAG	2 cut(s)	86, 402
EcoICRI	GAGCTC	1 cut(s)	131
EcoO109I	RGGNCCY	1 cut(s)	13
EcoT38I	GRGCYC	1 cut(s)	133
FaiI	YATR	7 cut(s)	424, 432, 462, 485, 509, 517, 552
FaqI	GGGAC	2 cut(s)	221, 511
Fnu4HI	GCNGC	4 cut(s)	36, 39, 42, 513
FokI	GGATG	2 cut(s)	413, 449
FriOI	GRGCYC	1 cut(s)	133
Fsp4HI	GCNGC	4 cut(s)	36, 39, 42, 513
FspBI	CTAG	1 cut(s)	312
GluI	GCNGC	4 cut(s)	36, 39, 42, 513
HaeIII	GGCC	1 cut(s)	107
HapII	CCGG	2 cut(s)	18, 156
HgaI	GACGC	1 cut(s)	239
Hin1I	GRCGYC	1 cut(s)	231
HinfI	GANTC	4 cut(s)	62, 97, 137, 347
HpaII	CCGG	2 cut(s)	18, 156
HphI	GGTGA	4 cut(s)	97, 188, 239, 461
Hpy188I	TCNGA	2 cut(s)	67, 559
Hpy188III	TCNNGA	2 cut(s)	134, 312
Hpy99I	CGWCG	2 cut(s)	164, 262
HpyAV	CCTTC	2 cut(s)	236, 380
HpyCH4III	ACNGT	2 cut(s)	164, 212
HpyCH4V	TGCA	3 cut(s)	337, 353, 515
HpyF10VI	GCNNNNNNNGC	1 cut(s)	41
HpyF3I	CTNAG	3 cut(s)	50, 80, 540
Hsp92I	GRCGYC	1 cut(s)	231
KpnI	GGTACC	1 cut(s)	150
Kzo9I	GATC	3 cut(s)	73, 298, 418
LmnI	GCTCC	1 cut(s)	257
Lsp1109I	GCAGC	2 cut(s)	22, 499
LweI	GCATC	1 cut(s)	368
MaeI	CTAG	1 cut(s)	312
MaeIII	GTNAC	1 cut(s)	227
MalI	GATC	3 cut(s)	75, 300, 420
MboI	GATC	3 cut(s)	73, 298, 418
MflI	RGATCY	1 cut(s)	418
MhlI	GDGCHC	2 cut(s)	133, 326
MluCI	AATT	1 cut(s)	391
MlyI	GAGTC	1 cut(s)	91
MseI	TTAA	4 cut(s)	114, 306, 471, 531
MspI	CCGG	2 cut(s)	18, 156
MspR9I	CCNGG	1 cut(s)	18
MwoI	GCNNNNNNNGC	1 cut(s)	41
NciI	CCSGG	1 cut(s)	18
NdeII	GATC	3 cut(s)	73, 298, 418
NlaIV	GGNNCC	3 cut(s)	15, 148, 253
NmeAIII	GCCGAG	1 cut(s)	11
NmuCI	GTSAC	1 cut(s)	227
NspV	TTCGAA	1 cut(s)	23
PcsI	WCGNNNNNNNCGW	1 cut(s)	237
PfeI	GAWTC	3 cut(s)	62, 137, 347
PflFI	GACNNNGTC	1 cut(s)	164
PkrI	GCNGC	4 cut(s)	37, 40, 43, 514
PleI	GAGTC	1 cut(s)	91
PpsI	GAGTC	1 cut(s)	91
PpuMI	RGGWCCY	1 cut(s)	13
Psp124BI	GAGCTC	1 cut(s)	133
Psp5II	RGGWCCY	1 cut(s)	13
PspN4I	GGNNCC	3 cut(s)	15, 148, 253
PspPI	GGNCC	1 cut(s)	13
PspPPI	RGGWCCY	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	418
PsyI	GACNNNGTC	1 cut(s)	164
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
SacI	GAGCTC	1 cut(s)	133
SaqAI	TTAA	4 cut(s)	114, 306, 471, 531
SatI	GCNGC	4 cut(s)	36, 39, 42, 513
Sau3AI	GATC	3 cut(s)	73, 298, 418
Sau96I	GGNCC	1 cut(s)	13
SchI	GAGTC	1 cut(s)	91
ScrFI	CCNGG	1 cut(s)	18
SduI	GDGCHC	2 cut(s)	133, 326
SetI	ASST	6 cut(s)	9, 15, 133, 155, 286, 546
SfaNI	GCATC	1 cut(s)	368
SfuI	TTCGAA	1 cut(s)	23
SinI	GGWCC	1 cut(s)	13
Sse9I	AATT	1 cut(s)	391
SsiI	CCGC	3 cut(s)	38, 41, 246
SspI	AATATT	1 cut(s)	376
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	16
TaaI	ACNGT	2 cut(s)	164, 212
TaqI	TCGA	2 cut(s)	23, 168
TasI	AATT	1 cut(s)	391
TauI	GCSGC	2 cut(s)	41, 44
TfiI	GAWTC	3 cut(s)	62, 137, 347
Tru1I	TTAA	4 cut(s)	114, 306, 471, 531
Tru9I	TTAA	4 cut(s)	114, 306, 471, 531
TscAI	CASTG	2 cut(s)	125, 415
TseFI	GTSAC	1 cut(s)	227
TseI	GCWGC	2 cut(s)	35, 512
Tsp45I	GTSAC	1 cut(s)	227
TspDTI	ATGAA	1 cut(s)	207
TspRI	CASTG	2 cut(s)	125, 415
Tth111I	GACNNNGTC	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	13
XbaI	TCTAGA	1 cut(s)	311
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.